mkiyer's library 41 articles Export

	An oestrogen-receptor-alpha-bound human chromatin interactome. [My Copy] Nature, Vol. 462, No. 7269. (5 November 2009), pp. 58-64. by Melissa J. Fullwood, Mei Hui H. Liu, You Fu F. Pan, et al.Jun Liu, Han Xu, Yusoff Bin B. Mohamed, Yuriy L. Orlov, Stoyan Velkov, Andrea Ho, Poh Huay H. Mei, Elaine G. Chew, Phillips Yao Hui Y. Huang, Willem-Jan J. Welboren, Yuyuan Han, Hong Sain S. Ooi, Pramila N. Ariyaratne, Vinsensius B. Vega, Yanquan Luo, Peck Yean Y. Tan, Pei Ye Y. Choy, Senali Abayratna D. Wansa, Bing Zhao, Kar Sian S. Lim, Shi Chi C. Leow, Jit Sin S. Yow, Roy Joseph, Haixia Li, Kartiki V. Desai, Jane S. Thomsen, Yew Kok K. Lee, R. Krishna Murthy Karuturi, Thoreau Herve, Guillaume Bourque, Hendrik G. Stunnenberg, Xiaoan Ruan, Valere Cacheux-Rataboul, Wing-Kin K. Sung, Edison T. Liu, Chia-Lin L. Wei, Edwin Cheung, Yijun Ruan posted to tags paired-end mcf7 interactome interaction estrogen chromatin chia-pet analysis by mkiyer on 2009-11-09 19:16:19 as along with 4 people chvlyl fenghezi gdb TRHvidsten
	c-Myc suppression of miR-23a/b enhances mitochondrial glutaminase expression and glutamine metabolism [My Copy] Nature, Vol. 458, No. 7239. (15 February 2009), pp. 762-765. by Ping Gao, Irina Tchernyshyov, Tsung-Cheng Chang, et al.Yun-Sil Lee, Kayoko Kita, Takafumi Ochi, Karen I. Zeller, Angelo M. De Marzo, Jennifer E. Van Eyk, Joshua T. Mendell, Chi V. Dang posted to warburg prostate_cancer myc microrna c-myc by mkiyer on 2009-10-27 00:43:51 as along with 3 people and 1 group tonamswish provero valeriehilgers microRNA
	Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours. [My Copy] BMC genomics, Vol. 10, No. 1. (26 February 2009), 93. by Ruping Sun, Xuping Fu, Yao Li, Yi Xie, Yumin Mao posted to prostate_cancer microrna by mkiyer on 2009-10-27 00:37:36 as along with 5 people and 1 group jfr heliopais natstreet provero neils microRNA
	MicroRNA-330 acts as tumor suppressor and induces apoptosis of prostate cancer cells through E2F1-mediated suppression of Akt phosphorylation [My Copy] Oncogene, Vol. 28, No. 38. (13 July 2009), pp. 3360-3370. by K. H. Lee, Y. L. Chen, S. D. Yeh, et al.M. Hsiao, J. T. Lin, Y. G. Goan, P. J. Lu posted to utr tumor_suppressor prostate_cancer microrna by mkiyer on 2009-10-27 00:31:24 as along with 2 people and 1 group tonamswish valeriehilgers microRNA
	Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1386-1393. by Alexander V. Alekseyenko, Christopher J. Lee posted to interval_tree interval database algorirthm by mkiyer on 2009-10-23 04:07:17 as along with 5 people and 3 groups robfsouza cisevol urgi stajich dandaman JLab BergmanLab Mycology
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to varient snp sequencing next_generation massively_parallel_sequencing detection by mkiyer on 2009-10-22 20:24:51 as along with 15 people and 3 groups hzoltan Peiyong darian seb1 heliopais dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	Identification of Amino Acid Residues in the ETS Transcription Factor Erg That Mediate Erg-Jun/Fos-DNA Ternary Complex Formation [My Copy] Journal of Biological Chemistry, Vol. 276, No. 20. (18 May 2001), pp. 17181-17189. by Alexis Verger, Eric Buisine, SÃ©verine CarrÃ¨re, et al.RenÃ© Wintjens, Anne Flourens, Jean Coll, Dominique StÃ©helin, Martine Duterque-Coquillaud posted to transcription_factor ternary physical_interaction jun fos erg by mkiyer on 2009-10-15 20:42:38 as
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to somatic_mutations sequencing rna_editing metastasis lobular_breast_cancer genomes disease_progression breast_cancers by mkiyer on 2009-10-08 20:23:41 as along with 13 people and 2 groups misonneh pst jwfoley stubrown chvlyl giovenko frohike brianb Zephyrus jsuchit torfinnnome merpublic djkt Chinnaiyan Lab Journal picks
	Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 40. (6 October 2009), pp. 17077-17082. by Gregory E. Sims, Se-Ran R. Jun, Guohong Albert A. Wu, Sung-Hou H. Kim posted to phylogeny nongenic mutation_rates mammalian_genomes genic evolution by mkiyer on 2009-10-08 14:40:09 as along with 7 people djkt wendygarnica Geknitics jsatkosk antariksh sujaikumar bpcusack
	Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes [My Copy] Nat Meth, Vol. 6, No. 4. (15 March 2009), pp. 291-295. by Iwanka Kozarewa, Zemin Ning, Michael A. Quail, Mandy J. Sanders, Matthew Berriman, Daniel J. Turner posted to uneven_distribution sequencing pcr_bias next_generation library_preparation illumina dna_sequences amplification by mkiyer on 2009-09-29 00:51:36 as along with 6 people guhjy inesdesantiago natstreet athma druvus jbhiatt
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to peak-finders chip_seq chip-seq by mkiyer on 2009-09-25 15:37:29 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi inesdesantiago idonaldson polivares druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility [My Copy] Nature Genetics, Vol. 41, No. 10. (20 September 2009), pp. 1122-1126. by Julius Gudmundsson, Patrick Sulem, Daniel F. Gudbjartsson, et al.Thorarinn Blondal, Arnaldur Gylfason, Bjarni A. Agnarsson, Kristrun R. Benediktsdottir, Droplaug N. Magnusdottir, Gudbjorg Orlygsdottir, Margret Jakobsdottir, Simon N. Stacey, Asgeir Sigurdsson, Tiina Wahlfors, Teuvo Tammela, Joan P. Breyer, Kate M. McReynolds, Kevin M. Bradley, Berta Saez, Javier Godino, Sebastian Navarrete, Fernando Fuertes, Laura Murillo, Eduardo Polo, Katja K. Aben, Inge M. van Oort, Brian K. Suarez, Brian T. Helfand, Donghui Kan, Carlo Zanon, Michael L. Frigge, Kristleifur Kristjansson, Jeffrey R. Gulcher, Gudmundur V. Einarsson, Eirikur Jonsson, William J. Catalona, Jose I. Mayordomo, Lambertus A. Kiemeney, Jeffrey R. Smith, Johanna Schleutker, Rosa B. Barkardottir, Augustine Kong, Unnur Thorsteinsdottir, Thorunn Rafnar, Kari Stefansson posted to snps prostate_cancer_risk prostate_cancer gwas genome_wide_association by mkiyer on 2009-09-24 20:13:29 as along with 3 people liqbbi misonneh xingxu
	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study [My Copy] Nature Genetics, Vol. 41, No. 10. (20 September 2009), pp. 1116-1121. by Rosalind A. Eeles, Zsofia Kote-Jarai, Ali A. Al Olama, et al.Graham G. Giles, Michelle Guy, Gianluca Severi, Kenneth Muir, John L. Hopper, Brian E. Henderson, Christopher A. Haiman, Johanna Schleutker, Freddie C. Hamdy, David E. Neal, Jenny L. Donovan, Janet L. Stanford, Elaine A. Ostrander, Sue A. Ingles, Esther M. John, Stephen N. Thibodeau, Daniel Schaid, Jong Y. Park, Amanda Spurdle, Judith Clements, Joanne L. Dickinson, Christiane Maier, Walther Vogel, Thilo Dork, Timothy R. Rebbeck, Kathleen A. Cooney, Lisa Cannon-Albright, Pierre O. Chappuis, Pierre Hutter, Maurice Zeegers, Radka Kaneva, Hong-Wei Zhang, Yong-Jie Lu, William D. Foulkes, Dallas R. English, Daniel A. Leongamornlert, Malgorzata Tymrakiewicz, Jonathan Morrison, Audrey T. Ardern-Jones, Amanda L. Hall, Lynne T. O'Brien, Rosemary A. Wilkinson, Edward J. Saunders, Elizabeth C. Page, Emma J. Sawyer, Stephen M. Edwards, David P. Dearnaley, Alan Horwich, Robert A. Huddart, Vincent S. Khoo, Christopher C. Parker, Nicholas Van As, Christopher J. Woodhouse, Alan Thompson, Tim Christmas, Chris Ogden, Colin S. Cooper, Melissa C. Southey, Artitaya Lophatananon, Jo-Fen Liu, Laurence N. Kolonel, Loic Le Marchand, Tiina Wahlfors, Teuvo L. Tammela, Anssi Auvinen, Sarah J. Lewis, Angela Cox, Liesel M. FitzGerald, Joseph S. Koopmeiners, Danielle M. Karyadi, Erika M. Kwon, Mariana C. Stern, Roman Corral, Amit D. Joshi, Ahva Shahabi, Shannon K. McDonnell, Thomas A. Sellers, Julio Pow-Sang, Suzanne Chambers, Joanne Aitken, R. A. Frank Gardiner, Jyotsna Batra, Mary A. Kedda, Felicity Lose, Andrea Polanowski, Briony Patterson, Jurgen Serth, Andreas Meyer, Manuel Luedeke, Klara Stefflova, Anna M. Ray, Ethan M. Lange, Jim Farnham, Humera Khan, Chavdar Slavov, Atanaska Mitkova, Guangwen Cao, Douglas F. Easton posted to susceptibility_loci susceptibility_alleles snps prostate_cancer_risk prostate_cancer prostate prca by mkiyer on 2009-09-24 20:09:49 as along with 3 people colinveal misonneh xingxu
	Identification of a new prostate cancer susceptibility locus on chromosome 8q24. [My Copy] Nature genetics, Vol. 41, No. 10. (20 October 2009), pp. 1055-1057. by Meredith Yeager, Nilanjan Chatterjee, Julia Ciampa, et al.Kevin B. Jacobs, Jesus Gonzalez-Bosquet, Richard B. Hayes, Peter Kraft, Sholom Wacholder, Nick Orr, Sonja Berndt, Kai Yu, Amy Hutchinson, Zhaoming Wang, Laufey Amundadottir, Heather Spencer S. Feigelson, Michael J. Thun, W. Ryan Diver, Demetrius Albanes, Jarmo Virtamo, Stephanie Weinstein, Fredrick R. Schumacher, Geraldine Cancel-Tassin, Olivier Cussenot, Antoine Valeri, Gerald L. Andriole, E. David Crawford, Christopher A. Haiman, Brian Henderson, Laurence Kolonel, Loic Le Marchand, Afshan Siddiq, Elio Riboli, Timothy J. Key, Rudolf Kaaks, William Isaacs, Sarah Isaacs, Kathleen E. Wiley, Henrik Gronberg, Fredrik Wiklund, Pär Stattin, Jianfeng Xu, S. Lilly Zheng, Jielin Sun, Lars J. Vatten, Kristian Hveem, Merethe Kumle, Margaret Tucker, Daniela S. Gerhard, Robert N. Hoover, Joseph F. Fraumeni, David J. Hunter, Gilles Thomas, Stephen J. Chanock posted to susceptibility_locus snp prostate_cancer_risk prostate_cancer homozygote heterozygote genetic_markers european_ancestry chromosome cancer_susceptibility by mkiyer on 2009-09-24 20:08:26 as along with 3 people Cunctator misonneh xingxu
	Multiple loci on 8q24 associated with prostate cancer susceptibility [My Copy] Nature Genetics, Vol. 41, No. 10. (20 September 2009), pp. 1058-1060. by Ali A. Al Olama, Zsofia Kote-Jarai, Graham G. Giles, et al.Michelle Guy, Jonathan Morrison, Gianluca Severi, Daniel A. Leongamornlert, Malgorzata Tymrakiewicz, Sameer Jhavar, Ed Saunders, John L. Hopper, Melissa C. Southey, Kenneth R. Muir, Dallas R. English, David P. Dearnaley, Audrey T. Ardern-Jones, Amanda L. Hall, Lynne T. O'Brien, Rosemary A. Wilkinson, Emma Sawyer, Artitaya Lophatananon, Alan Horwich, Robert A. Huddart, Vincent S. Khoo, Christopher C. Parker, Christopher J. Woodhouse, Alan Thompson, Tim Christmas, Chris Ogden, Colin Cooper, Jenny L. Donovan, Freddie C. Hamdy, David E. Neal, Rosalind A. Eeles, Douglas F. Easton posted to snp prostate cancer by mkiyer on 2009-09-24 20:06:34 as along with 2 people misonneh xingxu
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to next_generation genome browser by mkiyer on 2009-09-24 20:05:34 as along with 28 people and 2 groups hzoltan darian daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard operon neils BergmanLab Journal picks
	Genome-Wide Analysis of Small RNA and Novel MicroRNA Discovery in Human Acute Lymphoblastic Leukemia Based on Extensive Sequencing Approach [My Copy] PLoS ONE, Vol. 4, No. 9. (2 September 2009), e6849. by Hua Zhang, Jian-Hua Yang, Yu-Sheng Zheng, et al.Peng Zhang, Xiao Chen, Jun Wu, Ling Xu, Xue-Qun Luo, Zhi-Yong Ke, Hui Zhou, Liang-Hu Qu, Yue-Qin Chen posted to rna novel noncoding microrna discovery cancer by mkiyer on 2009-09-24 02:23:45 as along with 3 people fishtank tibbitts samgj
	Relative power and sample size analysis on gene expression profiling data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 439. by M. van Iterson, P. A. 't Hoen, P. Pedotti, et al.G. J. Hooiveld, J. T. den Dunnen, G. J. van Ommen, J. M. Boer, R. X. Menezes posted to solexa methods illumina gene expression experimental_design by mkiyer on 2009-09-20 01:33:08 as along with 6 people and 1 group manduca dswan Stew fenghezi rdiaz barriot Bioinformatics - CRUK
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to statistics rnaseq rna-seq comparison by mkiyer on 2009-09-01 17:38:49 as along with 46 people and 2 groups cthachuk hzoltan jwfoley heliopais debasis maren mtagaya stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery [My Copy] Genome Research (17 August 2009) by Joanna Boros, Ian J. Donaldson, Amanda O'Donnell, et al.Zaneta A. Odrowaz, Leo Zeef, Mathieu Lupien, Clifford A. Meyer, X. Shirley Liu, Myles Brown, Andrew D. Sharrocks posted to no-tag by mkiyer on 2009-08-24 19:21:27 as along with 1 group Chinnaiyan Lab
	Insights from genomic profiling of transcription factors [My Copy] Nature Reviews Genetics, Vol. 10, No. 9. (11 August 2009), pp. 605-616. by Peggy J. Farnham posted to transcription factor chip-seq chip-chip by mkiyer on 2009-08-18 21:36:35 as along with 17 people and 2 groups heliopais inesdesantiago fenghezi nklee samanthacooper fpattyn druvus frohike stubrown qayub megraw TRHvidsten ericrpaquet ilyashl jbhiatt idonaldson danmaclean Journal picks Chinnaiyan Lab
	Long intronic noncoding RNA transcription: Expression noise or expression choice? [My Copy] Genomics, Vol. 93, No. 4. (17 April 2009), pp. 291-298. by Rodrigo Louro, Anna S. Smirnova, Sergio Verjovski-Almeida posted to rnas review noncoding by mkiyer on 2009-08-13 18:40:05 as along with 3 people and 1 group guhjy galka8_diploma jm12 Chinnaiyan Lab
	Androgen responsive intronic non-coding RNAs. [My Copy] BMC biology, Vol. 5 (30 January 2007), 4. by Rodrigo Louro, Helder I. Nakaya, Paulo P. Amaral, et al.Fernanda Festa, Mari C. Sogayar, Aline M. da Silva, Sergio Verjovski-Almeida, Eduardo M. Reis posted to rnas prostate noncoding non-coding androgen by mkiyer on 2009-08-13 17:50:04 as along with 3 people and 2 groups tardigrade xico candyapple Chinnaiyan Lab WetBiology
	Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. [My Copy] Genome biology, Vol. 8, No. 3. (26 March 2007), R43. by Helder I. Nakaya, Paulo P. Amaral, Rodrigo Louro, et al.André Lopes, Angela A. Fachel, Yuri B. Moreira, Tarik A. El-Jundi, Aline M. da Silva, Eduardo M. Reis, Sergio Verjovski-Almeida posted to rnas noncoding non-coding intronic by mkiyer on 2009-08-13 17:47:03 as along with 3 people and 1 group myrtilus jfr djkt Chinnaiyan Lab
	Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer [My Copy] Oncogene, Vol. 23, No. 39. (28 June 2004), pp. 6684-6692. by Eduardo M. Reis, Helder I. Nakaya, Rodrigo Louro, et al.Flavio C. Canavez, Aurea V. F. Flatschart, Giulliana T. Almeida, Camila M. Egidio, Apua C. Paquola, Abimael A. Machado, Fernanda Festa, Denise Yamamoto, Renato Alvarenga, Camille C. da Silva, Glauber C. Brito, Sergio D. Simon, Carlos A. Moreira-Filho, Katia R. Leite, Luiz H. Camara-Lopes, Franz S. Campos, Etel Gimba, Giselle M. Vignal, Hamza El-Dorry, Mari C. Sogayar, Marcello A. Barcinski, Aline M. da Silva, Sergio Verjovski-Almeida posted to rna prostate non-coding lincrna cancer by mkiyer on 2009-08-12 13:52:50 as along with 2 people and 3 groups jfr dchughes Chinnaiyan Lab G4ID Genetics-of-Gambling
	Long, abundantly expressed non-coding transcripts are altered in cancer [My Copy] Hum. Mol. Genet., Vol. 17, No. 5. (1 March 2008), pp. 642-655. by Damon S. Perez, Tiffany R. Hoage, Jay R. Pritchett, et al.Allison L. Ducharme-Smith, Meredith L. Halling, Sree C. Ganapathiraju, Paul S. Streng, David I. Smith posted to cancer non-coding rna rnas by mkiyer on 2009-08-10 21:49:30 as along with 2 people and 1 group hkuhn dchughes Chinnaiyan Lab
	Cancer: Three birds with one stone [My Copy] Nature, Vol. 460, No. 7254. (22 July 2009), pp. 466-467. by Franck Toledo, Boris Bardot posted to cancer microrna non-coding p53 rna by mkiyer on 2009-08-06 05:15:25 as along with 1 person and 1 group yas Chinnaiyan Lab
	Modulation of microRNA processing by p53. [My Copy] Nature, Vol. 460, No. 7254. (23 July 2009), pp. 529-533. by Hiroshi I. Suzuki, Kaoru Yamagata, Koichi Sugimoto, Takashi Iwamoto, Shigeaki Kato, Kohei Miyazono posted to microrna p53 by mkiyer on 2009-08-04 21:38:28 as along with 7 people and 2 groups giovenko valeriehilgers guhjy leliavski caizhiqiang frohike megraw Chinnaiyan Lab Journal picks
	DNA-dependent protein kinase in nonhomologous end joining: a lock with multiple keys? [My Copy] The Journal of cell biology, Vol. 179, No. 2. (22 October 2007), pp. 183-186. by Eric Weterings, David J. Chen posted to damage dna dna-pk repair by mkiyer on 2009-08-04 03:44:01 as along with 1 group Chinnaiyan Lab
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to alignment bioinformatics bwa sequence tool by mkiyer on 2009-07-27 05:48:48 as along with 33 people and 4 groups lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted to chip-seq h3k36 h3k36me3 h3k4 h3k4me3 histone lander lincrna modifications non-coding rnas by mkiyer on 2009-07-24 15:26:00 as along with 29 people and 2 groups hzoltan jwfoley rsaito greg gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada Chinnaiyan Lab JLab
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted to bioinformatics chip-seq by mkiyer on 2009-07-24 15:11:00 as along with 8 people and 2 groups Stew tonamswish stubrown inesdesantiago ewilban1 guhjy humburg rschulz Bioinformatics - CRUK Chinnaiyan Lab
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to chip-seq factor targets transcription by mkiyer on 2009-07-24 14:57:06 as along with 14 people and 4 groups hzoltan Vincent_Rouilly mfgreen ewilban1 idonaldson guhjy rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to alignment bioinformatics mapping ngs by mkiyer on 2009-07-24 14:48:39 as along with 28 people and 5 groups cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog jonilaserson Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. [My Copy] Genome research, Vol. 19, No. 4. (April 2009), pp. 521-532. by Melissa J. Fullwood, Chia-Lin L. Wei, Edison T. Liu, Yijun Ruan posted to bioinformatics ngs paired-end transcriptome by mkiyer on 2009-07-24 14:46:10 as along with 19 people and 1 group hzoltan cthachuk GustavoLacerda jandot inesdesantiago rschulz guhjy lp2 natstreet druvus absterga coela hpaces orzenil idoerg behindtherabbit nuin djkt jbhiatt Chinnaiyan Lab
	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2613-2614. by Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner posted to alignment bioinformatics mapping python sequence by mkiyer on 2009-07-24 14:40:03 as along with 3 people and 1 group guhjy natstreet druvus Chinnaiyan Lab
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to chip-seq histone hmm modifications peak-finders by mkiyer on 2009-07-21 21:21:16 as along with 8 people darian tonamswish ewilban1 rschulz polivares caseybrown djkt epigenetics
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-seq macs peak-finders by mkiyer on 2009-07-20 22:27:07 as along with 24 people and 2 groups hzoltan Vincent_Rouilly darian stubrown humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	gamma-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (1 October 2008), pp. 5678-5694. by Andrea Kinner, Wenqi Wu, Christian Staudt, George Iliakis posted to break cancer dna drug h2ax ph2ax repair targets therapy by mkiyer on 2009-07-20 20:54:45 as along with 1 person and 1 group zhlei Chinnaiyan Lab
	Targeted cancer therapies based on the inhibition of DNA strand break repair. [My Copy] Oncogene, Vol. 26, No. 56. (10 December 2007), pp. 7816-7824. by M. J. O'Connor, N. M. Martin, G. C. Smith posted to break cancer dna drug repair targets therapy by mkiyer on 2009-07-20 20:53:30 as along with 1 person and 1 group guhjy Chinnaiyan Lab
	DNA repair pathways as targets for cancer therapy [My Copy] Nat Rev Cancer, Vol. 8, No. 3. (7 March 2008), pp. 193-204. by Thomas Helleday, Eva Petermann, Cecilia Lundin, Ben Hodgson, Ricky A. Sharma posted to cancer dna drug repair targets therapy by mkiyer on 2009-07-20 20:50:54 as along with 5 people and 1 group guhjy TOchi renatomilani Petersarkies dbs Chinnaiyan Lab

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cancer	8
chip-seq	7
microrna	6
non-coding	6
prostate_cancer	6
bioinformatics	5
rnas	5
dna	4
noncoding	4
prostate	4
repair	4
rna	4
targets	4
alignment	3
drug	3
next_generation	3
peak-finders	3
prostate_cancer_risk	3
sequencing	3
snp	3
therapy	3
break	2
factor	2
histone	2
illumina	2
lincrna	2
mapping	2
modifications	2
ngs	2
p53	2
paired-end	2
sequence	2
snps	2
transcription	2
algorirthm	1
amplification	1
analysis	1
androgen	1
breast_cancers	1
browser	1
bwa	1
cancer_susceptibility	1
chia-pet	1
chip-chip	1
chip_seq	1
chromatin	1
chromosome	1
c-myc	1
comparison	1
damage	1
database	1
detection	1
discovery	1
disease_progression	1
dna-pk	1
dna_sequences	1
erg	1
estrogen	1
european_ancestry	1
evolution	1
experimental_design	1
expression	1
fos	1
gene	1
genetic_markers	1
genic	1
genome	1
genomes	1
genome_wide_association	1
gwas	1
h2ax	1
h3k36	1
h3k36me3	1
h3k4	1
h3k4me3	1
heterozygote	1
hmm	1
homozygote	1
interaction	1
interactome	1
interval	1
interval_tree	1
intronic	1
jun	1
lander	1
library_preparation	1
lobular_breast_cancer	1
macs	1
mammalian_genomes	1
massively_parallel_sequencing	1
mcf7	1
metastasis	1
methods	1
mutation_rates	1
myc	1
nongenic	1
novel	1
pcr_bias	1
ph2ax	1
phylogeny	1
physical_interaction	1
prca	1
python	1
review	1
rna_editing	1
rnaseq	1
rna-seq	1
solexa	1
somatic_mutations	1
statistics	1
susceptibility_alleles	1
susceptibility_loci	1
susceptibility_locus	1
tags	1
ternary	1
tool	1
transcription_factor	1
transcriptome	1
tumor_suppressor	1
uneven_distribution	1
utr	1
varient	1
warburg	1

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