<i>Background</i>: Pharmacogenetics uses genetic variation to predict individual differences in response to medications and holds much promise to improve treatment of addictive disorders. <i>Objectives</i>: To review how genetic variation affects responses to cocaine, amphetamine, and methamphetamine and how this information may guide pharmacotherapy. <i>Methods</i>: We performed a cross-referenced literature search on pharmacogenetics, cocaine, amphetamine, and methamphetamine. <i>Results</i>: We describe functional genetic variants for enzymes dopamine-beta-hydroxylase (D&b.beta;H), catechol-<i>O</i>-methyltransferase (COMT), and dopamine transporter (DAT1), dopamine D4 receptor, and brain-derived neurotrophic factor (BDNF). A single nucleotide polymorphism (SNP; C-1021T) in the D&b.beta;H gene is relevant to paranoia associated with disulfiram pharmacotherapy for cocaine addiction. Individuals with variable number tandem repeats (VNTR) of the <i>SLC6A3</i> gene 3′-untranslated region polymorphism of DAT1 have altered responses to drugs. The 10/10 repeat respond poorly to methylphenidate pharmacotherapy and the 9/9 DAT1 variant show blunted euphoria and physiological response to amphetamine. COMT, D4 receptor, and BDNF polymorphisms are linked to methamphetamine abuse and psychosis. <i>Conclusions</i>: Disulfiram and methylphenidate pharmacotherapies for cocaine addiction are optimized by considering polymorphisms affecting D&b.beta;H and DAT1 respectively. Altered subjective effects for amphetamine in DAT1 VNTR variants suggest a protected phenotype. <i>Scientific Significance</i>: Pharmacogenetic-based treatments for psychostimulant addiction are critical for successful treatment.