mmartin's library 83 articles Export

	A new rotation invariant similarity measure for trajectories [My Copy] Computational Intelligence in Robotics and Automation, 2005. CIRA 2005. Proceedings. 2005 IEEE International Symposium on In Computational Intelligence in Robotics and Automation, 2005. CIRA 2005. Proceedings. 2005 IEEE International Symposium on (2005), pp. 631-634. by H. Fashandi, A. M. E. Moghaddam posted to trajectory gesture by mmartin on 2009-10-28 13:08:08 as along with 1 person and 4 groups hanhnv Human rendering Movement evaluation Paper for Game architecuture Physic therapy
	Rotation invariant distance measures for trajectories [My Copy] In KDD '04: Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining (2004), pp. 707-712. by Michail Vlachos, D. Gunopulos, Gautam Das posted to gesture by mmartin on 2009-10-28 13:02:40 as
	3-Dimensional curve similarity using string matching [My Copy] Robotics and Autonomous Systems, Vol. 49, No. 3-4. (31 December 2004), pp. 165-172. by Wladimir Rodriguez, Mark Last, Abraham Kandel, Horst Bunke posted to gesture by mmartin on 2009-10-28 12:57:04 as
	Gestures are strings: efficient online gesture spotting and classification using string matching [My Copy] In BodyNets '07: Proceedings of the ICST 2nd international conference on Body area networks (2007), pp. 1-8. by Thomas Stiefmeier, Daniel Roggen, Gerhard Tröster posted to gesture by mmartin on 2009-10-28 12:50:40 as
	miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (12 October 2009), 328. by Wei C. Wang, Feng M. Lin, Wen C. Chang, Kuan Y. Lin, Hsien Da Huang, Na S. Lin posted to microrna by mmartin on 2009-10-14 17:35:46 as along with 5 people and 1 group GeeSharpMinor ealloza natstreet heliopais druvus microRNA
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to no-tag by mmartin on 2009-07-28 13:08:37 as along with 38 people and 2 groups seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1424-1425. by You Jung J. Kim, Nikhil Teletia, Victor Ruotti, et al.Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel posted to alignment read-mapping by mmartin on 2009-06-09 09:30:28 as along with 12 people and 2 groups jfr n00c guhjy nuin idonaldson AlexBateman bmajoros humburg Thaverkamp druvus svenrahmann djkt Bioinformatics Journal picks
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to mapping by mmartin on 2009-05-11 14:27:50 as along with 17 people hzoltan bozdagd fishtank burak ThomasDOtto n00c natstreet adijr druvus felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to mapping read-mapping sequence-alignment string-indexing by mmartin on 2009-04-24 16:17:45 as along with 36 people and 4 groups jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	Genome-scale DNA methylation maps of pluripotent and differentiated cells [My Copy] Nature, Vol. 454, No. 7205. (06 July 2008), pp. 766-770. by Alexander Meissner, Tarjei S. Mikkelsen, Hongcang Gu, et al.Marius Wernig, Jacob Hanna, Andrey Sivachenko, Xiaolan Zhang, Bradley E. Bernstein, Chad Nusbaum, David B. Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S. Lander posted to bisulfite methylation by mmartin on 2009-04-22 10:35:38 as along with 14 people and 1 group aprickett saravana jmstat christoffpale guhjy rschulz jernst jfr mrochman gdb jasonflannick inesdesantiago djkt wsjames Oxford Virology
	An improved algorithm for matching biological sequences [My Copy] J Mol Biol, Vol. 162, No. 3. (15 December 1982), pp. 705-708. by Osamu Gotoh posted to alignment by mmartin on 2009-04-22 09:23:48 as along with 5 people rabio sebk vavi adijr jofiel
	A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons [My Copy] Journal of Molecular Biology, Vol. 197, No. 4. (20 October 1987), pp. 723-728. by Michael S. Waterman, Mark Eggert posted to alignment by mmartin on 2009-04-22 09:22:38 as along with 1 person rabio
	A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis [My Copy] Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785. by Thomas A. Down, Vardhman K. Rakyan, Daniel J. Turner, et al.Paul Flicek, Heng Li, Eugene Kulesha, Stefan Graf, Nathan Johnson, Javier Herrero, Eleni M. Tomazou, Natalie P. Thorne, Liselotte Backdahl, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Richard Durbin, Simon Tavare, Stephan Beck posted to chip-seq epigenetics medip methylation by mmartin on 2009-04-20 11:09:46 as along with 9 people and 1 group fabrices druvus timhubbard sebastien_vigneau rschulz bpcusack slevy03 oelemento guhjy KCL & UCL Bioinformatics
	Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete [My Copy] Human Molecular Genetics, Vol. 18, No. 8. (17 February 2009), pp. 1439-1448. by Michael Zeschnigk, Marcel Martin, Gisela Betzl, et al.Andreas Kalbe, Caroline Sirsch, Karin Buiting, Stephanie Gross, Epameinondas Fritzilas, Bruno Frey, Sven Rahmann, Bernhard Horsthemke posted to bisulfite by mmartin on 2009-04-07 12:56:40 as
	From genome to epigenome [My Copy] Hum Mol Genet, Vol. 14 Spec No 1 (15 April 2005) by Adele Murrell, Vardhman K. Rakyan, Stephan Beck posted to epigenetics by mmartin on 2009-04-06 12:54:36 as along with 2 people selimuz vplagnol
	Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis [My Copy] Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536. by Ryan Lister, Ronan C. O'Malley, Julian Tonti-Filippini, et al.Brian D. Gregory, Charles C. Berry, Harvey A. Millar, Joseph R. Ecker posted to bisulfite methylation read-mapping solexa by mmartin on 2009-04-06 09:37:25 as along with 7 people natstreet kengg caseybrown megraw GeeSharpMinor jmjimenez gdb
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to bisulfite methylation read-mapping solexa by mmartin on 2009-04-06 09:06:43 as along with 15 people and 1 group druvus darian iamlily1046 ychang0918 rschulz natstreet iris42 hkuhn kengg usagi-kirin djkt ghattem epigenetics mdimon slonik KCL & UCL Bioinformatics
	Whole-genome re-sequencing. [My Copy] Current opinion in genetics & development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 545-552. by David R. Bentley posted to 454 sequencing by mmartin on 2009-04-06 09:03:48 as along with 13 people and 3 groups rshe druvus n00c anuskap jameswasmuth usagi-kirin jmeppley frohike indigoviolet dchughes azazello jo_davies kmdaily EisenLab G4ID Genetics-of-Gambling
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. Mcdade, Michael P. Mckenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to 454 by mmartin on 2009-04-06 08:56:51 as along with 38 people and 5 groups n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Computational Epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted to epigenetics methylation review by mmartin on 2009-04-06 08:52:54 as along with 17 people and 2 groups operon iris42 pawelsobko huali suizifish sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs barriot Ema Thomasah guhjy SIMR bioinformatics Bioinformatics
	Exact and heuristic algorithms for weighted cluster editing. [My Copy] Comput Syst Bioinformatics Conf, Vol. 6 (2007), pp. 391-401. by Sven Rahmann, Tobias Wittkop, Jan Baumbach, Marcel Martin, Anke Truss, Sebastian Böcker posted to cluster-editing by mmartin on 2009-03-31 10:31:22 as along with 3 people isimpson druvus dps
	The Sux Sequoia Index for Approximate String Matching [My Copy] by Ela Hunt posted to approximate-string-matching by mmartin on 2009-03-30 10:55:30 as
	Indexing Methods for Approximate String Matching [My Copy] IEEE Data Engineering Bulletin, Vol. 24, No. 4. (2001), pp. 19-27. by Gonzalo Navarro, Ricardo A. Baeza-Yates, Erkki Sutinen, Jorma Tarhio posted to approximate-string-matching by mmartin on 2009-03-30 10:24:08 as along with 4 people snowman romano vidal31 dmeister
	Managing Gigabytes: Compressing and Indexing Documents and Images [My Copy] (15 May 1999) by Ian H. Witten, Ian H. Witten, Alistair Moffat, Timothy C. Bell posted to no-tag by mmartin on 2009-03-30 10:23:51 as along with 18 people and 2 groups agulli myelin mapio rozim leidner rahul pferguson damaru tolosoft mthomure caomo michaelmampaey runson pprett jodal dmeister ChaTo ansobol SRL AI
	Better filtering with gapped q-grams [My Copy] Fundam. Inf., Vol. 56, No. 1,2. (2003), pp. 51-70. by Stefan Burkhardt, Juha Kärkkäinen posted to no-tag by mmartin on 2009-03-30 10:22:36 as along with 1 person nedwards
	A Practical q-Gram Index for Text Retrieval Allowing Errors [My Copy] by Gonzalo Navarro, Ricardo B. Yates posted to approximate-string-matching string-indexing by mmartin on 2009-03-30 10:20:37 as along with 1 person meerkat
	Linearized Suffix Tree: an Efficient Index Data Structure with the Capabilities of Suffix Trees and Suffix Arrays [My Copy] Algorithmica, Vol. 52, No. 3. (1 November 2008), pp. 350-377. by Dong Kim, Minhwan Kim, Heejin Park posted to suffixarray by mmartin on 2009-03-25 09:07:30 as along with 1 person AbnerCYH
	Suffix Arrays: A New Method for On-Line String Searches [My Copy] In SODA '90: Proceedings of the first annual ACM-SIAM symposium on Discrete algorithms (1990), pp. 319-327. by Udi Manber, Gene Myers posted to suffixarray by mmartin on 2009-03-25 09:02:31 as along with 4 people and 1 group numata jack treangen dleinhaeuser Vision
	An incomplex algorithm for fast suffix array construction [My Copy] Software: Practice and Experience, Vol. 37, No. 3. (2007), pp. 309-329. by Klaus-Bernd Schürmann, Jens Stoye posted to suffixarray by mmartin on 2009-03-24 18:15:18 as
	PILER: identification and classification of genomic repeats [My Copy] Bioinformatics, Vol. 21 Suppl 1 (June 2005) by Robert C. Edgar, Eugene W. Myers posted to alignment seeded-alignment sequence-alignment string-indexing by mmartin on 2009-03-24 14:29:39 as along with 7 people natstreet druvus treangen jackjackjjj timflutre urgi yoanjacquemin
	A probabilistic method for small RNA flowgram matching. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 75-86. by V. Vacic, H. Jin, J. K. Zhu, S. Lonardi posted to 454 alignment by mmartin on 2009-03-24 13:17:04 as
	MOM: maximum oligonucleotide mapping [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 969-970. by Hugh L. Eaves, Yuan Gao posted to mapping sequence-alignment by mmartin on 2009-03-24 08:21:14 as along with 7 people seb1 jfr n00c cassj rschulz guhjy druvus
	Accuracy and quality of massively parallel DNA pyrosequencing [My Copy] Genome Biology, Vol. 8, No. 7. (20 July 2007), R143. by Susan M. Huse, Julie A. Huber, Hilary G. Morrison, Mitchell L. Sogin, David M. Welch posted to 454 sequencing by mmartin on 2009-03-24 08:09:26 as along with 17 people and 3 groups nfparrish druvus n00c jlgreen Thaverkamp orzenil floatingpoint Huub_odc gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Olaf_Ilzins bozdagd iSEEM Bioinformatics gatech-compgenomics
	BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing [My Copy] Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 4067-4068. by Christoph Bock, Sabine Reither, Thomas Mikeska, Martina Paulsen, Jorn Walter, Thomas Lengauer posted to methylation by mmartin on 2009-03-19 18:38:45 as along with 1 person shikin
	Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system [My Copy] Nature, Vol. 450, No. 7166. (01 November 2007), pp. 56-62. by Jean Livet, Tamily A. Weissman, Hyuno Kang, et al.Ryan W. Draft, Ju Lu, Robyn A. Bennis, Joshua R. Sanes, Jeff W. Lichtman posted to brainbow by mmartin on 2009-03-19 18:37:08 as along with 17 people and 2 groups flieder yyfwuhan trm005 allysonlister Borelli dchughes lechristophe samjlord shivakmr subhacom psique napvasconcelos jjpaton starz1010101 kcrawlik dvaidpz balicea VisionLab moernerlab
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted to no-tag by mmartin on 2009-03-19 18:35:15 as along with 26 people and 3 groups daforerog hzoltan idonaldson kshameer operon guhjy druvus n00c dnewburger djkt sobolevnrm jfr psique cisevol GeeSharpMinor neils dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley baker-group BergmanLab Bioinformatics
	A general method applicable to the search for similarities in the amino acid sequence of two proteins☆ [My Copy] Journal of Molecular Biology, Vol. 48, No. 3. (28 March 1970), pp. 443-453. by S. Needleman, C. Wunsch posted to alignment by mmartin on 2009-03-19 18:32:52 as along with 7 people jwm kentz nafets BioNica adijr RamuAnandakrishnan granujilla
	The fragment assembly string graph. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by Eugene W. Myers posted to fragment-assembly by mmartin on 2009-03-19 18:29:56 as along with 5 people idoerg dakelley azazello Neeperando isimpson
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted to svm by mmartin on 2009-03-19 18:27:55 as along with 32 people and 3 groups guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer svozil jfr MarcoAlvarez sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor Bioinformatics baker-group VisionLab
	“Genes” [My Copy] Theory in Biosciences, Vol. 127, No. 3. (1 August 2008), pp. 215-221. by Sonja Prohaska, Peter Stadler posted to no-tag by mmartin on 2009-03-19 18:25:39 as along with 1 person tmarscha
	Hardness of Optimal Spaced Seed Design [My Copy] Combinatorial Pattern Matching (2005), pp. 144-155. by François Nicolas, Eric Rivals posted to gapped-seeds sequence-alignment string-indexing by mmartin on 2009-03-19 18:18:55 as along with 1 person nedwards
	Patternhunter II: Highly Sensitive and Fast Homology Search [My Copy] J Bioinform Comput Biol, Vol. 2, No. 3. (September 2004), pp. 417-439. by Ming Li, Bin Ma, Derek Kisman, John Tromp posted to seeded-alignment string-indexing by mmartin on 2009-03-19 18:05:47 as along with 3 people umit treangen bozdagd
	PatternHunter: faster and more sensitive homology search [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 440-445. by Bin Ma, John Tromp, Ming Li posted to gapped-seeds seeded-alignment string-indexing by mmartin on 2009-03-19 18:03:35 as along with 10 people druvus maria_hauser umit nuke2005 catmat treangen natstreet nedwards DickSilver bozdagd
	SeqAn an efficient, generic C++ library for sequence analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andreas Döring, David Weese, Tobias Rausch, Knut Reinert posted to seqan by mmartin on 2009-03-19 18:00:55 as along with 16 people aheilbut MarcelSchulz n00c druvus dquest daforerog groepl guhjy chad_davis laughcry ryanraaum nklee barriot mailund magusina reyez
	DECOMP--from interpreting Mass Spectrometry peaks to solving the Money Changing Problem [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 591-593. by Sebastian Bocker, Zsuzsanna Liptak, Marcel Martin, Anton Pervukhin, Henner Sudek posted to mass-spectrometry by mmartin on 2009-03-17 18:49:31 as along with 4 people nedwards guhjy laughcry robert
	Genome-wide high throughput analysis of DNA methylation in eukaryotes. [My Copy] Methods (San Diego, Calif.), Vol. 47, No. 3. (21 March 2009), pp. 142-150. by K. R. Pomraning, K. M. Smith, M. Freitag posted to methylation sequencing by mmartin on 2009-03-13 13:04:06 as along with 4 people fabrices rschulz guhjy abizar
	Mercury BLASTN: Faster DNA Sequence Comparison Using a Streaming Hardware Architecture [My Copy] In Reconfigurable Systems Summer Institute (July 2007) by Jeremy D. Buhler, Joseph M. Lancaster, Arpith C. Jacob, Roger D. Chamberlain posted to alignment fpga by mmartin on 2009-03-13 12:54:38 as along with 1 person benwei
	Efficient q-Gram Filters for Finding All ε-Matches over a Given Length [My Copy] Journal of Computational Biology, Vol. 13, No. 2. (2006), pp. 296-308. by Kim R. Rasmussen, Jens Stoye, Eugene W. Myers posted to qgram by mmartin on 2009-03-05 18:44:47 as along with 1 person darian
	Simple linear work suffix array construction [My Copy] In Proc. 13th International Conference on Automata, Languages and Programming (2003) by Juha Kärkkäinen, Peter Sanders posted to suffixarray by mmartin on 2009-03-05 11:13:20 as along with 3 people whym tmarscha ariels
	A taxonomy of suffix array construction algorithms [My Copy] ACM Comput. Surv., Vol. 39, No. 2. (2007), 4. by Simon J. Puglisi, W. F. Smyth, Andrew H. Turpin posted to suffixarray by mmartin on 2009-03-05 11:12:47 as along with 5 people mogwaing arafalov whym pwais mwmarkland

Note: You may cite this page as: http://www.citeulike.org/user/mmartin

Result page: 1 2 Next

alignment	8
methylation	7
string-indexing	6
suffixarray	6
sequence-alignment	5
454	4
bisulfite	4
gesture	4
read-mapping	4
seeded-alignment	4
sequencing	4
approximate-string-matching	3
epigenetics	3
mapping	3
gapped-seeds	2
qgram	2
review	2
solexa	2
brainbow	1
chip-seq	1
cluster-editing	1
fpga	1
fragment-assembly	1
graph	1
mass-spectrometry	1
medip	1
microrna	1
mincut	1
seqan	1
svm	1
trajectory	1

mmartin's library 83 articles Export

mmartin's tags