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	An empirical Bayesian approach for model-based inference of cellular signaling networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 371. by David Klinke posted to systems_biology signaling_pathways signaling_pathway_inference mcmc bayesian_methods adaptive_markov_chain_monte_carlo by cmzmasek on 2009-11-10 17:43:41 as along with 1 person renatomilani
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to systems_biology software_package available_software by gbloeb on 2009-11-10 16:01:08 as along with 45 people and 4 groups miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2236-2243. by Xuerui Yang, Yang Zhou, Rong Jin, Christina Chan posted to systems_biology regulatory_pathways pathways networks network_topology microarray_data gene_networks gene_expression_data co-expression algorithm_developers by ekotelnikova on 2009-11-10 11:25:34 as along with 2 people ptrobajo guhjy
	Adaptable data management for systems biology investigations. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 79. by John Boyle, Hector Rovira, Chris Cavnor, David Burdick, Sarah Killcoyne, Ilya Shmulevich posted to web systems-biology semantic-web by JeremyZucker on 2009-11-09 22:10:42 as along with 10 people daforerog allysonlister guhjy lptolik renatomilani fgibson sjcockell erexhepa VGreiff druvus
	Synthetic Gene Networks That Count [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202. by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins posted to synthetic_biology gene_networks by dbikard on 2009-11-09 13:53:06 as along with 15 people pyjamashark abhishek_tiwari mjoach myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt jjray dswan
	ENFIN – A European network for integrative systems biology [My Copy] Comptes Rendus Biologies (15 October 2009) by Pascal Kahlem, Andrew Clegg, Florian Reisinger, et al.Ioannis Xenarios, Henning Hermjakob, Christine Orengo, Ewan Birney posted to systems_biology data_integration bioinformatics by perkeo on 2009-11-09 13:31:38 as
	Engineering the Salmonella type III secretion system to export spider silk monomers. [My Copy] Molecular systems biology, Vol. 5 (15 September 2009) by Daniel M. Widmaier, Danielle Tullman-Ercek, Ethan A. Mirsky, et al.Rena Hill, Sridhar Govindarajan, Jeremy Minshull, Christopher A. Voigt posted to synthetic_biology share by yyfwuhan on 2009-11-09 11:25:26 as along with 2 people grahamc balabu
	Gemini, a Bifunctional Enzymatic and Fluorescent Reporter of Gene Expression [My Copy] PLoS ONE, Vol. 4, No. 11. (4 November 2009), e7569. by Lance Martin, Austin Che, Drew Endy posted to synthetic_biology reporter_gene genetic_parts fluorescent_protein escherichia_coli e_ by genocad on 2009-11-09 02:10:15 as along with 1 person austin
	Dynamics of protein-protein encounter: A Langevin equation approach with reaction patches [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Jakob Schluttig, Denitsa Alamanova, Volkhard Helms, Ulrich S. Schwarz posted to systemsbiology protein markov_models langevin complexformation by anuragsethi on 2009-11-07 16:32:41 as along with 3 people and 2 groups barry sobolevnrm jmccammon baker-group McCammon
	Fundamental Aspects of Protein−Protein Association Kinetics [My Copy] Chemical Reviews, Vol. 109, No. 3. (11 March 2009), pp. 839-860. by G. Schreiber, G. Haran, H. X. Zhou posted to systemsbiology protein kinetics kinase complexformation by anuragsethi on 2009-11-07 16:26:48 as along with 10 people and 2 groups barry sunhwan jmccammon sobolevnrm willard kafuitay carlosjavierna sschurer hadesnumb paulschlesinger McCammon baker-group
	Automated unrestricted multigene recombineering for multiprotein complex production [My Copy] Nature Methods, Vol. 6, No. 6. (03 May 2009), pp. 447-450. by Christoph Bieniossek, Yan Nie, Daniel Frey, et al.Natacha Olieric, Christiane Schaffitzel, Ian Collinson, Christophe Romier, Philipp Berger, Timothy J. Richmond, Michel O. Steinmetz, Imre Berger posted to synthetic_biology recombinant_protein gene_expression escherichia_coli by dbikard on 2009-11-05 19:39:09 as along with 3 people austin zwang guhjy
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to synthetic_gene synthetic_dna synthetic_biology genetic_code gene_expression by dbikard on 2009-11-05 14:39:25 as along with 6 people and 1 group RasmusJensen pala0088 jjray Vincent_Rouilly michaelbarton bmduggan Synthetic Biology
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted to systems_biology phenotype expression_level drosophila complex_traits by daveGerrard to the group BergmanLab on 2009-11-05 11:10:10 as along with 15 people and 1 group ongenetics timflutre FuncGen thokall bernadettgaal dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt RockmanLab
	Cells need safety valves [My Copy] BioEssays, Vol. 31, No. 7. (2009), pp. 769-773. by Antoine Danchin posted to synthetic_biology permeases osmotic_pressure lactose_operon by dbikard on 2009-11-05 06:00:56 as along with 1 person cambray
	A framework for evolutionary systems biology [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 27. by Laurence Loewe posted to systems-biology mutations modelling fitness-landscape evolutionary-theory by tomhebbron on 2009-11-04 22:53:20 as along with 16 people and 1 group pawelsobko leemond31 maren gwenknight Scis0000002 agomez dswan bertelsen JeremyZucker JoeDunckley Zephyrus michaelbarton trfield jjray VGreiff druvus Roswell Cancer Crosstalk
	Life without a wall or division machine in Bacillus subtilis [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 849-853. by M. Leaver, P. Dominguez-Cuevas, J. M. Coxhead, R. A. Daniel, J. Errington posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-11-04 14:16:19 as along with 3 people bobturner biomcgary bertelsen
	Coupled Growth and Division of Model Protocell Membranes [My Copy] Journal of the American Chemical Society, Vol. 131, No. 15. (22 April 2009), pp. 5705-5713. by Ting F. Zhu, Jack W. Szostak posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-11-04 14:16:14 as along with 1 person Zephyrus
	Toward accurate reconstruction of functional protein networks. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Nir Yosef, Lior Ungar, Einat Zalckvar, et al.Adi Kimchi, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to systems_biology protein_networks network by jfr on 2009-11-02 17:11:35 as along with 6 people poirel zwang roys renatomilani phoenixzxl biomcgary
	TinkerCell: modular CAD tool for synthetic biology [My Copy] Journal of Biological Engineering, Vol. 3, No. 1. (2009), 19. by Deepak Chandran, Frank Bergmann, Herbert Sauro posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-30 18:46:39 as
	Engineering bacteria to solve the Burnt Pancake Problem [My Copy] Journal of Biological Engineering, Vol. 2, No. 1. (20 May 2008), 8. by Karmella Haynes, Marian Broderick, Adam Brown, et al.Trevor Butner, James Dickson, W. Lance Harden, Lane Heard, Eric Jessen, Kelly Malloy, Brad Ogden, Sabriya Rosemond, Samantha Simpson, Erin Zwack, A. Malcolm Campbell, Todd Eckdahl, Laurie Heyer, Jeffrey Poet posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-30 01:28:49 as along with 2 people neveaire Borelli
	Solving a Hamiltonian Path Problem with a bacterial computer [My Copy] Journal of Biological Engineering, Vol. 3, No. 1. (2009), 11. by Jordan Baumgardner, Karen Acker, Oyinade Adefuye, et al.Samuel Crowley, Will DeLoache, James Dickson, Lane Heard, Andrew Martens, Nickolaus Morton, Michelle Ritter, Amber Shoecraft, Jessica Treece, Matthew Unzicker, Amanda Valencia, Mike Waters, A. Malcolm Campbell, Laurie Heyer, Jeffrey Poet, Todd Eckdahl posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-30 01:28:46 as along with 5 people pablocarb Fantozzi jjrohal neveaire csrocha
	The Fluorescent Toolbox for Assessing Protein Location and Function [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 217-224. by Ben N. G. Giepmans, Stephen R. Adams, Mark H. Ellisman, Roger Y. Tsien posted to systems_biology fluorescent_dyes by pjmaybank on 2009-10-29 21:54:42 as along with 10 people and 2 groups guhjy nirfriedman lmcf Fritz cherrie eeruowl samjlord mhucka frampton ts3435 neurolit moernerlab
	Co-expression of signaling proteins improves robustness of the bacterial chemotaxis pathway [My Copy] Journal of Biotechnology, Vol. 129, No. 2. (30 April 2007), pp. 173-180. by Linda Løvdok, Markus Kollmann, Victor Sourjik posted to systems_biology chemotaxis by pjmaybank on 2009-10-29 14:53:27 as along with 2 people schmidtm vladimirov
	A synthetic metabolite-based mammalian inter-cell signaling system [My Copy] Mol. BioSyst., Vol. 5, No. 7. (2009), pp. 757-763. by Wilfried Weber, Marco Schuetz, Nicolas Denervaud, Martin Fussenegger posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-29 04:01:00 as
	Synthetic biology: exploring and exploiting genetic modularity through the design of novel biological networks [My Copy] Mol. BioSyst., Vol. 5, No. 7. (2009), pp. 704-713. by Christina M. Agapakis, Pamela A. Silver posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-29 04:00:55 as
	Darwinian chemistry: towards the synthesis of a simple cell [My Copy] Mol. BioSyst., Vol. 5, No. 7. (2009), pp. 686-694. by David Loakes, Philipp Holliger posted to syntheticbiology by abhishek_tiwari on 2009-10-29 03:59:01 as
	Synthetic metabolic pipelines [My Copy] Nat Biotech, Vol. 27, No. 8. (01 August 2009), pp. 728-729. by Matthew P. DeLisa, Robert J. Conrado posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-29 01:25:12 as along with 3 people jdoconnell pmendes dbk
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted to systems_biology protein_interaction protein-protein_interaction phylogenomics phylogenetics network_evolution module_rewiring module by biomcgary on 2009-10-28 18:46:31 as along with 7 people and 2 groups sillitoe ppgardne grahamc zwang druvus barriot phoenixzxl Orengo Group Journal Picks Journal picks
	A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000185. by Patrick Flaherty, Mala L. Radhakrishnan, Tuan Dinh, et al.Robert A. Rebres, Tamara I. Roach, Michael I. Jordan, Adam P. Arkin posted to systems_biology by pjmaybank on 2009-10-28 17:44:29 as along with 1 person aramesh2
	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted to sysbio by djkt on 2009-10-27 17:01:11 as along with 4 people carlk tmmurali lp2 ptrobajo
	Bridging from molecular simulation to biochemical networks. [My Copy] Curr Opin Struct Biol, Vol. 17, No. 2. (April 2007), pp. 166-172. by M. Stein, R. R. Gabdoulline, R. C. Wade posted to systemsbiology dynamics brownian_dynamics by anuragsethi on 2009-10-25 16:33:47 as along with 9 people and 1 group choonpeng oteri ocs aqeel Borelli cmmorel julius ras higueruelo Structural Biology Group TorVergata
	Mathematical modeling and synthetic biology [My Copy] Drug Discovery Today: Disease Models (20 August 2009) by D. Chandran, W. B. Copeland, S. C. Sleight, H. M. Sauro posted to syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-24 12:44:46 as
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to systems_biology network metabolic_pathways by venancio on 2009-10-23 20:30:11 as along with 13 people michaelbarton schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl roys
	Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria [My Copy] Journal of Biology, Vol. 8, No. 3. (15 April 2009), 29. by Thiago Venancio, L. Aravind posted to transcription tfs systems_biology networks evolution bacteria by venancio on 2009-10-23 18:49:31 as along with 1 person robfsouza
	miRNA-regulated dynamics in circadian oscillator models [My Copy] BMC Systems Biology, Vol. 3, No. 1. (5 May 2009), 45. by Amitabha Nandi, Candida Vaz, Alok Bhattacharya, Ramakrishna Ramaswamy posted to systems_biology microrna circadian by tonamswish on 2009-10-23 17:30:22 as along with 4 people and 1 group heliopais reyez daforerog valeriehilgers microRNA
	A map of human cancer signaling [My Copy] Molecular Systems Biology, Vol. 3 (18 December 2007) by Qinghua Cui, Yun Ma, Maria Jaramillo, et al.Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-McCourt, Enrico O. Purisima, Edwin Wang posted to systems_biology network bioinfo by tonamswish on 2009-10-23 05:20:12 as along with 12 people and 1 group poojamaj Zephyrus agomez shikin jfr tmmurali ealloza cjeans Ema renatomilani srp33 frohike Roswell Cancer Crosstalk
	Using biological networks to search for interacting loci in genome-wide association studies [My Copy] European Journal of Human Genetics, Vol. 17, No. 10. (11 March 2009), pp. 1231-1240. by Mathieu Emily, Thomas Mailund, Jotun Hein, Leif Schauser, Mikkel H. Schierup posted to snps epistatic_effects epistasis biological_networks by Geknitics on 2009-10-22 16:24:58 as along with 7 people and 1 group kimorley jo_davies daforerog psique guhjy frohike jdbowes Journal picks
	Functional compensation by duplicated genes in mouse [My Copy] Trends in Genetics, Vol. 25, No. 10. (25 October 2009), pp. 441-442. by Han Liang, Wen-Hsiung Li posted to sysbio rodents duplication divergence by djkt on 2009-10-21 18:52:20 as
	How to visually interpret biological data using networks [My Copy] Nature Biotechnology, Vol. 27, No. 10. (01 October 2009), pp. 921-924. by Daniele Merico, David Gfeller, Gary D. Bader posted to visualization biological_networks biological_data analysis_patterns by mhamidi on 2009-10-20 22:37:08 as along with 11 people and 1 group qayub OliverHarriman AJCann grahamc rdiaz megraw tmmurali fgibson gotgenes druvus dullhunk Journal picks
	Systems Biology Strikes Gold [My Copy] Cell, Vol. 137, No. 1. (3 April 2009), pp. 24-26. by Diogo M. Camacho, James J. Collins posted to systemsbiology syntheticbiology synthetic-biology by abhishek_tiwari on 2009-10-20 11:48:00 as along with 2 people Borelli renatomilani
	Systems biology and cancer prevention: all options on the table. [My Copy] Gene regulation and systems biology :, Vol. 2 (2008), pp. 307-319. by Simon Rosenfeld, Izet Kapetanovic posted to systemsbiology by abhishek_tiwari on 2009-10-20 11:44:41 as along with 2 people MahalakshmiGunupuru Borelli
	Neural system-enriched gene expression: relationship to biological pathways and neurological diseases [My Copy] Physiol. Genomics, Vol. 18, No. 2. (8 July 2004), pp. 167-183. by Jianhua Zhang, Amy Moseley, Anil G. Jegga, et al.Ashima Gupta, David P. Witte, Maureen Sartor, Mario Medvedovic, Sarah S. Williams, Cathy Ley-Ebert, Lique M. Coolen, Gregory Egnaczyk, Mary B. Genter, Michael Lehman, Jerry Lingrel, John Maggio, Linda Parysek, Ryan Walsh, Ming Xu, Bruce J. Aronow posted to systems_biology signaling_pathways regulatory_pathways pathways neurological_diseases neurological_disease neural_system nervous_tissues nervous_system_differentiation motor_neuron_disease microarray_data gene_expression_profiles gene_expression_database amyotrophic_lateral_sclerosis alzheimer als by ekotelnikova on 2009-10-19 15:26:06 as
	Spatiotemporal control of cell signalling using a light-switchable protein interaction [My Copy] Nature, Vol. 461, No. 7266. (13 September 2009), pp. 997-1001. by Anselm Levskaya, Orion D. Weiner, Wendell A. Lim, Christopher A. Voigt posted to synthetic_biology protein_protein_interactions by grahamc on 2009-10-19 06:26:50 as along with 6 people and 1 group pablocarb yyfwuhan lisa1 myzhang samjlord nzm moernerlab
	Induction of protein-protein interactions in live cells using light [My Copy] Nature Biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 941-945. by Masayuki Yazawa, Amir M. Sadaghiani, Brian Hsueh, Ricardo E. Dolmetsch posted to synthetic_biology protein_protein_interactions induction by grahamc on 2009-10-19 04:30:53 as along with 2 people mhamidi flbarroso
	Genome Size and Numbers of Biological Functions [My Copy] Transactions on Computational Systems Biology I (2005), pp. 44-49. by Ernest Feytmans, Denis Noble, Manuel C. Peitsch posted to systems_biology by dbk on 2009-10-17 12:13:26 as
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as along with 11 people and 1 group daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000529. by Yizhi Cai, Matthew W. Lux, Laura Adam, Jean Peccoud posted to synthetic_biology grammar genetic_parts by genocad on 2009-10-16 00:52:22 as along with 2 people abhishek_tiwari ptrobajo
	The structure and function of complex networks [My Copy] (25 Mar 2003) by M. E. J. Newman posted to social_network networks graph_models empirical_studies distributions complex_networks biological_networks by dcurtis on 2009-10-15 21:02:30 as
	Mathematical Physiology [My Copy] (11 May 2001) by James Keener, James Sneyd posted to systems_biology hill_coefficient by jporternj on 2009-10-14 18:40:14 as along with 5 people Dangerfc Scis0000002 ibesse chiufanlee I_Biomed
	Automated design of synthetic ribosome binding sites to control protein expression. [My Copy] Nature biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 946-950. by Howard M. Salis, Ethan A. Mirsky, Christopher A. Voigt posted to synthetic_biology ribosome_binding_site optimization methods gene_expression by dbikard on 2009-10-14 15:12:01 as along with 3 people and 1 group johntheap mhamidi michaelbarton BergmanLab

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mmt's watchlist [more than 800 articles] Export

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