Using FPGA Devices to Accelerate Biomolecular Simulations Export

@article{citeulike:1179116, abstract = {A field-programmable gate array implementation of a molecular dynamics simulation method reduces the microprocessor time-to-solution by a factor of three while using only high-level languages. The application speedup on FPGA devices increases with the problem size. The authors use a performance model to analyze the potential of simulating large-scale biological systems faster than many cluster-based supercomputing platforms}, author = {Alam, Sadaf R. and Agarwal, Pratul K. and Smith, Melissa C. and Vetter, Jeffrey S. and Caliga, David}, booktitle = {Computer}, citeulike-article-id = {1179116}, citeulike-linkout-0 = {http://dx.doi.org/10.1109/MC.2007.108}, citeulike-linkout-1 = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4133999}, doi = {10.1109/MC.2007.108}, journal = {Computer}, keywords = {fpgasupercomputing, high-performance\_computing, molecular\_dynamics}, number = {3}, pages = {66--73}, posted-at = {2008-05-27 10:39:39}, priority = {2}, title = {Using FPGA Devices to Accelerate Biomolecular Simulations}, url = {http://dx.doi.org/10.1109/MC.2007.108}, volume = {40}, year = {2007} }

TY - JOUR ID - citeulike:1179116 L3 - citeulike-article-id:1179116 N2 - A field-programmable gate array implementation of a molecular dynamics simulation method reduces the microprocessor time-to-solution by a factor of three while using only high-level languages. The application speedup on FPGA devices increases with the problem size. The authors use a performance model to analyze the potential of simulating large-scale biological systems faster than many cluster-based supercomputing platforms IS - 3 JF - Computer EP - 73 TI - Using FPGA Devices to Accelerate Biomolecular Simulations VL - 40 T2 - Computer SP - 66 KW - fpgasupercomputing KW - high-performance_computing KW - molecular_dynamics AU - Alam, Sadaf AU - Agarwal, Pratul AU - Smith, Melissa AU - Vetter, Jeffrey AU - Caliga, David PY - 2007/// UR - http://dx.doi.org/10.1109/MC.2007.108 ER -