monod's library 83 articles Export

	Efficiency, Robustness and Stochasticity of Gene Regulatory Networks in Systems Biology: lambda Switch as a Working Example [My Copy] (2 Dec 2005) by X. Zhu, L. Yin, L. Hood, D. Galas, P. Ao posted to robustness by monod on 2005-12-06 14:39:57 as along with 2 people entropy mmt
	Robustness and Evolvability in Living Systems (Princeton Studies in Complexity) [My Copy] (01 August 2005) by Andreas Wagner posted to robustness by monod on 2005-12-03 00:09:27 as along with 7 people and 2 groups wangbo anphony rklancer balicea chokma livingthingdan timflutre Controllers livingthing
	Modern theories of metabolic control and their applications (review). [My Copy] Biosci Rep, Vol. 4, No. 1. (January 1984), pp. 1-22. by H. V. Westerhoff, A. K. Groen, R. J. Wanders posted to metabolic_network robustness by monod on 2005-12-03 00:08:16 as
	Circuit topology and the evolution of robustness in two-gene circadian oscillators. [My Copy] Proc Natl Acad Sci U S A (8 August 2005) by Andreas Wagner posted to robustness by monod on 2005-12-03 00:07:46 as along with 3 people rklancer entropy eva_diva
	Robustness of Cellular Functions [My Copy] Cell, Vol. 118, No. 6. (17 September 2004), pp. 675-685. by Jörg Stelling, Uwe Sauer, Zoltan Szallasi, Francis J. Doyle Iii, John Doyle posted to robustness by monod on 2005-12-03 00:07:30 as along with 9 people and 1 group winterstream cryptochrome camster rklancer jjray bayesian javierFellow fishtank perpetuale dbk-lab
	Biological robustness. [My Copy] Nature reviews. Genetics, Vol. 5, No. 11. (November 2004), pp. 826-837. by Hiroaki Kitano posted to robustness by monod on 2005-12-03 00:06:35 as along with 16 people and 5 groups VGreiff sergiun superpyrin dbk betainverse korakot LeightonP bayesian teuder biosv madhadron nickluscombe anatiferous timflutre ekoenig tomhebbron streptomyces Philosophy_of_Information dbk-lab Blog_and_Wiki_Research EBI-regulation
	Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. [My Copy] Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136. by T. B. Kepler, T. C. Elston posted to gene_regulation noise robustness by monod on 2005-12-03 00:05:59 as along with 2 people jjray margaritis
	Integrative Analysis of Cell Cycle Control in Budding Yeast [My Copy] Mol. Biol. Cell, Vol. 15, No. 8. (1 August 2004), pp. 3841-3862. by Katherine C. Chen, Laurence Calzone, Attila Csikasz-Nagy, Frederick R. Cross, Bela Novak, John J. Tyson posted to cell-cycle gene_networks robustness yeast by monod on 2005-12-03 00:04:30 as along with 5 people richardfranzese kokphinchooi dagmar jbchang RamuAnandakrishnan
	Biological Networks: The Tinkerer as an Engineer [My Copy] Science, Vol. 301, No. 5641. (26 September 2003), pp. 1866-1867. by U. Alon posted to robustness synthetic_biology by monod on 2005-12-03 00:03:35 as along with 13 people and 4 groups nurban dlobo maiko anphony babakap Borelli alexg ddahlem shivakumar3_14 cmm lshaw rebeccamancy Ema GEB Complex Systems FAB-lab ColDyn
	The driving force for life's emergence: kinetic and thermodynamic considerations. [My Copy] J Theor Biol, Vol. 220, No. 3. (7 February 2003), pp. 393-406. by A. Pross posted to origin-of-life theory by monod on 2005-12-01 18:15:24 as
	Jump-starting a cellular world: investigating the origin of life, from soup to networks. [My Copy] PLoS Biol, Vol. 3, No. 11. (November 2005) by R. Robinson posted to evolution network-motifs origin-of-life synthetic_biology systems_biology theory by monod on 2005-11-30 19:06:44 as along with 10 people mjoach tmmurali imouthesmp dayjm Schmidtc balicea balabu jsnoddy mbeautru gulsacan
	Surviving heat shock: Control strategies for robustness and performance [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2736-2741. by H. El-Samad, H. Kurata, J. C. Doyle, C. A. Gross, M. Khammash posted to robustness by monod on 2005-11-30 19:02:22 as along with 4 people karthikraman jporternj madhadron jjray
	Motifs, control, and stability. [My Copy] PLoS Biol, Vol. 3, No. 11. (November 2005) by J. Doyle, M. Csete posted to control robustness stability by monod on 2005-11-29 21:00:50 as along with 5 people rklancer bayesian balicea javierFellow entropy
	Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana. [My Copy] Nat Biotechnol (20 November 2005) by Ming-Tang T. Chen, Ron Weiss posted to signaling synthetic_biology by monod on 2005-11-29 21:00:03 as along with 1 person rklancer
	Fundamental issues in systems biology. [My Copy] Bioessays, Vol. 27, No. 12. (December 2005), pp. 1270-1276. by Maureen A A. O'malley, John Dupré posted to philosophy-biology systems_biology theory by monod on 2005-11-27 23:00:03 as along with 5 people LeightonP eweaver wnpx biosv maralena
	Foundations for engineering biology [My Copy] Nature, Vol. 438, No. 7067., pp. 449-453. by Drew Endy posted to synthetic_biology by monod on 2005-11-25 16:29:52 as along with 13 people and 1 group antonkratz gvillar jec105 ClaireFB jmeppley eweaver perrywoo johncumbers pirapira kevinchannon dbikard austin grahamc SynBioSys
	Design principles of a bacterial signalling network [My Copy] Nature, Vol. 438, No. 7067., pp. 504-507. by Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik posted to control evolution modeling network-motifs robustness systems_biology by monod on 2005-11-25 16:29:34 as along with 13 people rklancer abhik chrn jmeppley bayesian alexg ryang balicea wnpx balabu entropy comb jjray
	Reconstruction of genetic circuits [My Copy] Nature, Vol. 438, No. 7067., pp. 443-448. by David Sprinzak, Michael B. Elowitz posted to gene_networks synthetic_biology systems_biology by monod on 2005-11-25 16:29:04 as along with 10 people Scis0000002 lenov Synthetic_Biology_Literature TobiasAbenius rklancer tuck jmeppley avery dbikard austin
	Robustness in bacterial chemotaxis [My Copy] Nature, Vol. 397, No. 6715. (14 January 1999), pp. 168-171. by U. Alon, M. G. Surette, N. Barkai, S. Leibler posted to robustness by monod on 2005-11-15 15:17:24 as along with 7 people jporternj cjryan rklancer nsamways balajis nirfriedman cerca
	Robustness in simple biochemical networks. [My Copy] Nature, Vol. 387, No. 6636. (26 June 1997), pp. 913-917. by N. Barkai, S. Leibler posted to robustness by monod on 2005-11-15 15:16:48 as along with 7 people and 1 group jporternj rklancer chrn bayesian adepace josepe nsamways EisenLab
	Redundancy, antiredundancy, and the robustness of genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 3. (5 February 2002), pp. 1405-1409. by D. C. Krakauer, J. B. Plotkin posted to robustness by monod on 2005-11-12 16:35:10 as along with 3 people operon RedmondSmyth tomhebbron
	A function-based framework for understanding biological systems. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 75-93. by J. D. Thomas, T. Lee, N. P. Suh posted to biological-function gene_networks modeling robustness systems_biology by monod on 2005-11-12 15:11:47 as along with 2 people eweaver mbeautru
	Dynamic Properties of Network Motifs Contribute to Biological Network Organization [My Copy] PLoS Biol, Vol. 3, No. 11. (4 October 2005), e343. by Robert J. Prill, Pablo A. Iglesias, Andre Levchenko posted to robustness by monod on 2005-11-12 15:00:48 as along with 13 people and 1 group vgauthier jporternj jjray tmmurali textoris bayesian luispedro xinian jdiggans phoenixzxl watson stefanoallesina marck NeuralNetworks
	Multiple feedback loops are key to a robust dynamic performance of tryptophan regulation in Escherichia coli [My Copy] FEBS Letters, Vol. 563, No. 1-3. (09 April 2004), pp. 234-240. by K. V. Venkatesh, Sharad Bhartiya, Anurag Ruhela posted to robustness by monod on 2005-11-11 03:21:13 as along with 2 people fastjoe23 alexg
	Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis [My Copy] PLoS Biology, Vol. 2, No. 2. (February 2004), pp. E49-E49. by Christopher V. Rao, John R. Kirby, Adam P. Arkin posted to robustness by monod on 2005-11-08 14:59:06 as
	Modeling network dynamics: the lac operon, a case study [My Copy] The Journal Of Cell Biology, Vol. 161, No. 3. (12 May 2003), pp. 471-476. by Jose M. Vilar, Calin C. Guet, Stanislas Leibler posted to gene_networks modeling modeling-general by monod on 2005-11-08 14:35:12 as
	Analysis of optimality in natural and perturbed metabolic networks [My Copy] Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 99, No. 23. (12 November 2002), pp. 15112-15117. by Daniel Segre, Dennis Vitkup, George M. Church posted to optimality robustness by monod on 2005-11-08 14:34:17 as along with 1 person Borelli
	Metabolic network structure determines key aspects of functionality and regulation [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 190-193. by Jorg Stelling, Steffen Klamt, Katja Bettenbrock, Stefan Schuster, Ernst D. Gilles posted to optimality robustness by monod on 2005-11-08 14:33:57 as along with 1 person and 1 group JeremyZucker MetabolicModeling
	Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 186-189. by Rafael U. Ibarra, Jeremy S. Edwards, Bernhard O. Palsson posted to optimality robustness by monod on 2005-11-08 14:33:15 as
	An amplified sensitivity arising from covalent modification in biological systems. [My Copy] Proc Natl Acad Sci U S A, Vol. 78, No. 11. (November 1981), pp. 6840-6844. by A. Goldbeter, D. E. Koshland posted to biochemistry control modeling signaling by monod on 2005-11-03 13:59:00 as along with 5 people and 1 group reidw rklancer jjray jbchang lenov compneur
	The selective values of alleles in a molecular network model are context dependent. [My Copy] Genetics, Vol. 166, No. 4. (April 2004), pp. 1715-1725. by J. Peccoud, K. V. Velden, D. Podlich, C. Winkler, L. Arthur, M. Cooper posted to evolution gene_networks by monod on 2005-11-01 14:41:14 as along with 4 people rklancer RMGraze balicea christiw
	Reverse Engineering of Biological Complexity [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669. by Marie E. Csete, John C. Doyle posted to robustness systems_biology by monod on 2005-10-31 17:40:37 as along with 24 people and 6 groups tomhebbron yyfwuhan abhishek_tiwari jdscheff jporternj Scis0000002 reyez camster snuppepuppan barry lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan kevinemamy anatiferous timflutre dbilar jrbanga edvin bayesian dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab
	Can a biologist fix a radio?--Or, what I learned while studying apoptosis. [My Copy] Cancer cell, Vol. 2, No. 3. (September 2002), pp. 179-182. by Yuri Lazebnik posted to systems_biology by monod on 2005-10-31 17:40:21 as along with 22 people and 6 groups daforerog cambray Borelli arne allysonlister babakap rschulz rklancer dbk irenas manduca chihchun_chen massivemayhem gisle Tominator mattjb balicea quianominorleo tvdbulck dbikard leilaperie bayesian streptomyces dbk-lab ComplexAdaptiveSystems DSTO-CAS Centre de Recherches Interdisciplinaires SynBioSys
	5th International Conference on Systems Biology (ICSB 2004), Heidelberg, October 9-13, 2004. [My Copy] Biosystems (18 October 2005) by Stefan Schuster, Roland Eils, Klaus Prank posted to outlook systems_biology by monod on 2005-10-31 17:28:17 as along with 1 person rabu
	A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation. [My Copy] Mol Cell, Vol. 19, No. 6. (16 September 2005), pp. 791-804. by R. G. Ponder, N. C. Fonville, S. M. Rosenberg posted to evolution stability by monod on 2005-10-28 06:50:31 as along with 2 people rklancer christiw
	Core genetic module: The mixed feedback loop. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 72, No. 3 Pt 1. (September 2005) by P. François, V. Hakim posted to control gene_networks multistability network-motifs by monod on 2005-10-28 06:48:13 as
	Interlinked fast and slow positive feedback loops drive reliable cell decisions. [My Copy] Science (New York, N.Y.), Vol. 310, No. 5747. (21 October 2005), pp. 496-498. by Onn Brandman, James E. Ferrell, Rong Li, Tobias Meyer posted to gene_networks systems_biology by monod on 2005-10-24 00:30:52 as along with 9 people reidw rklancer guhjy kentsis tuck jmeppley balajis wnpx margaritis
	Multisite protein phosphorylation makes a good threshold but can be a poor switch. [My Copy] Proc Natl Acad Sci U S A (29 September 2005) by Jeremy Gunawardena posted to control multistability signaling switch by monod on 2005-10-04 15:37:26 as along with 1 person rklancer
	Perspective: Evolution and detection of genetic robustness. [My Copy] Evolution Int J Org Evolution, Vol. 57, No. 9. (September 2003), pp. 1959-1972. by J. A. de Visser, J. Hermisson, G. P. Wagner, et al.L. Ancel Meyers, H. Bagheri-Chaichian, J. L. Blanchard, L. Chao, J. M. Cheverud, S. F. Elena, W. Fontana, G. Gibson, T. F. Hansen, D. Krakauer, R. C. Lewontin, C. Ofria, S. H. Rice, G. von Dassow, A. Wagner, M. C. Whitlock posted to robustness by monod on 2005-10-01 03:59:35 as
	Robustness as a measure of plausibility in models of biochemical networks. [My Copy] J Theor Biol, Vol. 216, No. 1. (7 May 2002), pp. 19-30. by M. Morohashi, A. E. Winn, M. T. Borisuk, H. Bolouri, J. Doyle, H. Kitano posted to robustness by monod on 2005-09-30 21:00:10 as along with 3 people and 1 group camster snuppepuppan samal dbk-lab
	Noise in gene expression: origins, consequences, and control. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013. by Jonathan M. Raser, Erin K. O'Shea posted to noise systems_biology by monod on 2005-09-29 06:59:34 as along with 21 people and 2 groups pkm kentz Zephyrus guhjy thomaskelder bertelsen inesdesantiago ddcttrl rklancer dayjm xico nirfriedman koller mhucka margaritis suizan shikin dylanwalker kagibbs klo bpcusack WetBiology GeneGo
	Systems biologyDeviations in mating [My Copy] Nature, Vol. 437, No. 7059. (28 September 2005), pp. 631-632. by Avigdor Eldar, Michael Elowitz posted to measurement noise systems_biology yeast by monod on 2005-09-29 06:57:17 as along with 2 people dayjm biosv
	Regulated cell-to-cell variation in a cell-fate decision system [My Copy] Nature (18 September 2005) by Alejandro Colman-Lerner, Andrew Gordon, Eduard Serra, et al.Tina Chin, Orna Resnekov, Drew Endy, Gustavo C. Pesce, Roger Brent posted to measurement noise systems_biology yeast by monod on 2005-09-29 06:56:19 as along with 8 people rklancer imouthesmp biosv balabu jiyu johncumbers jtaylor margaritis
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted to evolution gene_networks systems_biology theory by monod on 2005-09-27 19:51:25 as along with 22 people and 7 groups karthikraman roys rsantana vtraag anphony ocs saket mcphee marimo Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk Modularity in evolutionary algorithms MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
	Limitations of quantitative gene regulation models: a case study. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2391-2395. by P. M. Kim, B. Tidor posted to gene_regulation by monod on 2005-09-27 07:09:47 as along with 5 people Scis0000002 rklancer wnpx mmt lambda
	Phenotypic Diversity, Population Growth, and Information in Fluctuating Environments [My Copy] Science, Vol. 309, No. 5743. (23 September 2005), pp. 2075-2078. by Edo Kussell, Stanislas Leibler posted to evolution by monod on 2005-09-26 07:26:59 as along with 8 people chiufanlee yyfwuhan bernadettgaal rklancer jjray dbikard mhucka zambujo
	Bio-switches: what makes them robust? [My Copy] Curr Opin Genet Dev, Vol. 14, No. 4. (August 2004), pp. 428-434. by B. M. Slepchenko, M. Terasaki posted to multistability by monod on 2005-09-26 07:22:43 as
	Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. [My Copy] Chaos, Vol. 11, No. 1. (March 2001), pp. 227-236. by James E. E. Ferrell, Wen Xiong posted to multistability by monod on 2005-09-26 07:22:32 as along with 2 people jbchang ullahmukhtar
	Missense meanderings in sequence space: a biophysical view of protein evolution [My Copy] Nature Reviews Genetics, Vol. 6, No. 9. (01 September 2005), pp. 678-687. by Mark A. Depristo, Daniel M. Weinreich, Daniel L. Hartl posted to evolution protein-evolution by monod on 2005-09-21 20:42:16 as along with 4 people renewang rklancer ramensky bpcusack
	Bifurcation discovery tool. [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3688-3690. by V. Chickarmane, S. R. Paladugu, F. Bergmann, H. M. Sauro posted to modeling multistability theory by monod on 2005-09-17 15:48:41 as along with 1 person holan

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robustness	26
systems_biology	19
gene_networks	15
circuit	11
control	11
evolution	11
synthetic_biology	11
theory	9
multistability	8
modeling	6
gene_regulation	5
microbiology	5
network-motifs	4
noise	4
pcd_bacteria	4
yeast	4
computation	3
measurement	3
optimality	3
signaling	3
stability	3
switch	3
metabolic_network	2
modeling-general	2
origin-of-life	2
qs	2
biochemistry	1
biological-function	1
cell-cycle	1
courses	1
directed-evolution	1
locate	1
logic_gate	1
outlook	1
philosophy-biology	1
protein-evolution	1
science	1

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