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mrm's library [44 articles]

Recent papers added to mrm's library.
  • Connected Components in Random Graphs with Given Expected Degree Sequences
    Annals of Combinatorics, Vol. 6, No. 2. (November 2002), pp. 125-145.
    by Fan Chung, Linyuan Lu
    posted to graphs by mrm on 2005-08-03 20:03:00 as ***
  • The Average Distances in Random Graphs with Given Expected Degrees
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 25. (2002), pp. 15879-15882.
    by Fan Chung, Linyuan Lu
    posted to graphs by mrm on 2005-08-03 19:56:47 as read along with 1 person kikiblue7
  • Neural Codes: Firing Rates and beyond
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 24. (1997), pp. 12740-12741.
    by Wulfram Gerstner, Andreas K Kreiter, Henry Markram, Andreas VM Herz
    posted to neural_coding by mrm on 2005-08-03 19:53:44 as **
  • Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana.
    J Theor Biol, Vol. 234, No. 3. (7 June 2005), pp. 383-393.
    by JC Locke, AJ Millar, MS Turner
    posted to circadian regulatory_networks by mrm on 2005-04-11 12:07:35 as read along with 1 person Happybene
  • Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.
    Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1877-1886.
    by E Sontag, A Kiyatkin, BN Kholodenko
    posted to microarrays networks by mrm on 2005-03-29 18:33:50 as ** along with 4 people and 3 groups camster dbk wnpx smgomez streptomyces dbk-lab GomezLab
  • Open source software for the analysis of microarray data.
    Biotechniques, Vol. Suppl (March 2003), pp. 45-51.
    by S Dudoit, RC Gentleman, J Quackenbush
    posted to microarrays by mrm on 2005-03-29 18:07:10 as *** along with 4 people and 3 groups dbk macowell davidbroadhurst gupton streptomyces dbk-lab BUiGEM
  • Principles behind the multifarious control of signal transduction. ERK phosphorylation and kinase/phosphatase control.
    FEBS J, Vol. 272, No. 1. (January 2005), pp. 244-258.
    by JJ Hornberg, FJ Bruggeman, B Binder, CR Geest, AJ de Vaate, J Lankelma, R Heinrich, HV Westerhoff
    posted to oscillations regulatory_networks by mrm on 2005-02-01 15:04:27 as **** along with 2 people and 2 groups dbk knightjar streptomyces dbk-lab
  • Shape and dynamics of thermoregulating honey bee clusters.
    J Theor Biol, Vol. 204, No. 1. (7 May 2000), pp. 1-14.
    by DJ Sumpter, DS Broomhead
    posted to discrete_agents by mrm on 2005-01-21 16:11:57 as **
  • Ants and agents: a process algebra approach to modelling ant colony behaviour.
    Bull Math Biol, Vol. 63, No. 5. (September 2001), pp. 951-980.
    by DJ Sumpter, GB Blanchard, DS Broomhead
    posted to discrete_agents by mrm on 2005-01-21 16:11:36 as **
  • Relating individual behaviour to population dynamics.
    Proc R Soc Lond B Biol Sci, Vol. 268, No. 1470. (7 May 2001), pp. 925-932.
    by DJ Sumpter, DS Broomhead
    posted to discrete_agents by mrm on 2005-01-21 16:11:19 as **
  • Centralized immunogens as a vaccine strategy to overcome HIV-1 diversity.
    Expert Rev Vaccines, Vol. 3, No. 4 Suppl. (August 2004)
    by F Gao, BT Korber, E Weaver, HX Liao, BH Hahn, BF Haynes
    posted to hiv by mrm on 2005-01-21 16:08:07 as **
  • Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 1 Pt 2. (July 2001)
    by ME Newman
    posted to graphs social_networks by mrm on 2005-01-21 16:05:48 as ** along with 6 people and 3 groups korakot PatrickD rasca bjorns shivaram ltabourier Philosophy_of_Information Blog_and_Wiki_Research Wikipedia
  • Scientific collaboration networks. I. Network construction and fundamental results.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 1 Pt 2. (July 2001)
    by ME Newman
    posted to graphs social_networks by mrm on 2005-01-21 16:05:28 as ** along with 6 people and 3 groups korakot PatrickD rasca shivaram cmmorel fwkroon Philosophy_of_Information Blog_and_Wiki_Research Wikipedia
  • Are randomly grown graphs really random?
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 4 Pt 1. (October 2001)
    by DS Callaway, JE Hopcroft, JM Kleinberg, ME Newman, SH Strogatz
    posted to graphs probability by mrm on 2005-01-21 16:04:53 as *** along with 3 people Borelli junwang4 kei_s
  • Scaling and percolation in the small-world network model.
    Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics, Vol. 60, No. 6 Pt B. (December 1999), pp. 7332-7342.
    by ME Newman, DJ Watts
    posted to social_networks by mrm on 2005-01-21 16:03:35 as read along with 1 person yoh
  • Community structure in social and biological networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826.
    by M Girvan, ME Newman
    posted to social_networks by mrm on 2005-01-21 16:03:13 as ** along with 28 people and 4 groups jpbarrette ellakat chibatching compbio verdicchio ganden pridkett korakot rasca jtowle PiersYoung zqshen schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio Diego_Prada pipkin stefanoallesina Philosophy_of_Information Blog_and_Wiki_Research GraphVis T_lab
  • Assortative mixing in networks.
    Phys Rev Lett, Vol. 89, No. 20. (11 November 2002)
    by ME Newman
    posted to social_networks by mrm on 2005-01-21 15:59:24 as read along with 1 person yoh
  • Mixing patterns in networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 67, No. 2 Pt 2. (February 2003)
    by ME Newman
    posted to social_networks by mrm on 2005-01-21 15:59:01 as read
  • Why social networks are different from other types of networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 68, No. 3 Pt 2. (September 2003)
    by ME Newman, J Park
    posted to social_networks by mrm on 2005-01-21 15:58:28 as read along with 15 people and 9 groups mercutio korakot PatrickD sylvienoel devzero RyanSchultz tglaisyer rasca russellbeale behzad michmill nkorf wcrosbie merazzle adriandefroment Philosophy_of_Information Blog_and_Wiki_Research CSCW Librarians Semantic-Social-Networks Wikipedia CoP_CMS Virtual_Reality HCI-Bham
  • Finding and evaluating community structure in networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 69, No. 2 Pt 2. (February 2004)
    by ME Newman, M Girvan
    posted to social_networks by mrm on 2005-01-21 15:58:02 as ** along with 3 people rasca adriandefroment iris_2001
  • From The Cover: Diffusion-based method for producing density-equalizing maps.
    Proc Natl Acad Sci U S A, Vol. 101, No. 20. (18 May 2004), pp. 7499-7504.
    by MT Gastner, ME Newman
    posted to plain_cool by mrm on 2005-01-21 15:57:36 as **** along with 1 person ianturton
  • Analysis of weighted networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 70, No. 5 Pt 2. (November 2004)
    by ME Newman
    posted to graphs networks by mrm on 2005-01-21 15:56:29 as ** along with 1 person and 2 groups korakot Philosophy_of_Information Blog_and_Wiki_Research
  • On noise reduction methods for chaotic data.
    Chaos, Vol. 3, No. 2. (April 1993), pp. 127-141.
    by Peter Grassberger, Rainer Hegger, Holger Kantz, Carsten Schaffrath, Thomas Schreiber
    posted to stats time_series by mrm on 2005-01-21 15:53:33 as read
  • Estimating mutual information.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 69, No. 6 Pt 2. (June 2004)
    by A Kraskov, H Stögbauer, P Grassberger
    posted to mutual_info stats by mrm on 2005-01-21 15:52:29 as read along with 8 people and 1 group hardingp alexr rpadams xlli xtizon xinian zambujo dpf Autoregulation
  • Go with the winners: a general Monte Carlo strategy
    Computer Physics Communications, Vol. 147, No. 1-2. (01 August 2002), pp. 64-70.
    by Peter Grassberger
    posted to markov_chains by mrm on 2005-01-21 15:47:00 as **
  • Random Graph Models of Social Networks
    by MEJ Newman, DJ Watts, SH Strogatz
    posted to graphs networks social_networks by mrm on 2005-01-21 15:42:14 as read along with 9 people and 2 groups mmcgloho pridkett korakot rasca merazzle kubyaddi jaspervoskuilen ganden maralena Philosophy_of_Information Blog_and_Wiki_Research
  • Effects of Selective Neutrality on the Evolution of Molecular Species
    Proceedings: Biological Sciences, Vol. 265, No. 1403. (1998), pp. 1333-1338.
    by MEJ Newman, Robin Engelhardt
    posted to molecular_evolution by mrm on 2005-01-21 15:41:28 as **
  • Random Walks Arising in Random Number Generation
    The Annals of Probability, Vol. 15, No. 3. (1987), pp. 1148-1165.
    by FRK Chung, Persi Diaconis, RL Graham
    posted to markov_chains probability by mrm on 2005-01-21 15:38:22 as ***
  • A Geometric Interpretation of the Metropolis-Hastings Algorithm
    Statistical Science, Vol. 16, No. 4. (2001), pp. 335-339.
    by Louis J Billera, Persi Diaconis
    posted to markov_chains by mrm on 2005-01-21 15:35:25 as ***
  • Fair Dice
    The American Mathematical Monthly, Vol. 96, No. 4. (1989), pp. 337-339.
    by Persi Diaconis, Joseph B Keller
    posted to probability by mrm on 2005-01-21 15:34:55 as read along with 1 person josel0
  • Iterated Random Functions
    SIAM Review, Vol. 41, No. 1. (1999), pp. 45-76.
    by Persi Diaconis, David Freedman
    posted to ifs by mrm on 2005-01-21 15:33:35 as read along with 1 person josel0
  • Trailing the Dovetail Shuffle to its Lair
    The Annals of Applied Probability, Vol. 2, No. 2. (1992), pp. 294-313.
    by Dave Bayer, Persi Diaconis
    posted to probability by mrm on 2005-01-21 15:33:17 as **
  • Geometric Bounds for Eigenvalues of Markov Chains
    The Annals of Applied Probability, Vol. 1, No. 1. (1991), pp. 36-61.
    by Persi Diaconis, Daniel Stroock
    posted to markov_chains by mrm on 2005-01-21 15:32:44 as **
  • Shuffling Cards and Stopping Times
    The American Mathematical Monthly, Vol. 93, No. 5. (1986), pp. 333-348.
    by David Aldous, Persi Diaconis
    posted to probability by mrm on 2005-01-21 15:31:50 as ** along with 1 person josel0
  • Heat Conduction and Entropy Production in a One-Dimensional Hard-Particle Gas
    (1 August 2002)
    by Peter Grassberger, Walter Nadler, Lei Yang
    posted to stat_mech by mrm on 2005-01-21 15:25:27 as ***
  • Robustness, Flexibility, and the Role of Lateral Inhibition in the Neurogenic Network
    Current Biology, Vol. 12, No. 10. (14 May 2002), pp. 778-786.
    by Eli Meir, George von Dassow, Edwin Munro, Garrett M Odell
    posted to regulatory_networks robustness by mrm on 2005-01-18 21:23:35 as read along with 1 person rklancer
  • The segment polarity network is a robust developmental module.
    Nature, Vol. 406, No. 6792. (13 July 2000), pp. 188-192.
    by G von Dassow, E Meir, EM Munro, GM Odell
    posted to regulatory_networks robustness by mrm on 2005-01-18 21:13:05 as read along with 4 people and 2 groups camster rklancer rmj001 adepace dbk-lab EisenLab
  • On the uniform generation of random graphs with prescribed degree sequences
    (30 May 2004)
    by R Milo, N Kashtan, S Itzkovitz, MEJ Newman, U Alon
    posted to graphs by mrm on 2005-01-18 21:02:59 as read along with 3 people and 1 group nettraq nsamways navil Philosophy_of_Information
  • The Silicon Cell Initiative
    Current Genomics, Vol. 5, No. 8., 687.
    by Jacky L Snoep, Hans V Westerhoff
    posted to simulation by mrm on 2005-01-18 21:01:55 as *** along with 2 people dullhunk rmj001
  • What makes biochemical networks tick?
    Eur J Biochem, Vol. 271, No. 19. (October 2004), pp. 3877-3887.
    by BN Goldstein, G Ermakov, JJ Centelles, HV Westerhoff, M Cascante
    posted to oscillations by mrm on 2005-01-18 21:01:13 as *** along with 5 people and 2 groups camster rklancer dbk rmj001 wnpx streptomyces dbk-lab
  • Random graphs with arbitrary degree distributions and their applications
    (7 May 2001)
    by MEJ Newman, SH Strogatz, DJ Watts
    posted to graphs networks by mrm on 2005-01-18 20:48:28 as read along with 9 people and 3 groups korakot rmj001 lfriedl sugarexpletive jaspervoskuilen mbelinky ltabourier ransombriggs procesd Philosophy_of_Information Blog_and_Wiki_Research kdl
  • Mixing patterns in networks
    (4 February 2003)
    by MEJ Newman
    posted to social_networks by mrm on 2005-01-18 20:47:03 as read along with 5 people and 2 groups korakot rmj001 cantupaz G_RAM PiersYoung Philosophy_of_Information Blog_and_Wiki_Research
  • The structure and function of complex networks
    (25 March 2003)
    by MEJ Newman
    posted to networks by mrm on 2005-01-18 20:45:02 as read along with 47 people and 14 groups rrbarb apwesolowski dpf thecolourblue SimonGarnier phauly snuppepuppan korakot trunov karbak rmj001 Nichtich pdlug xxc momonga nkorf ChaTo imouthesmp ldietz rahul tuck lyongu cwoodward yish scottmoody ddahlem danieltruemper gane5h fukken AbnerCYH anon_pl shashikant esayre azygmunt adriandefroment kray carolaccs mylit ransombriggs theus jmarcelino salvoscellato Kwisatz ffloeck AnneB daniel51 xleonzhao Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST IS-Lab Semantic-Social-Networks Wikipedia mathgamespatterns semantic-multicast-routing SRL dtl vds-arg eni AGH-IISG CSBBGraphTheory
  • A measure of betweenness centrality based on random walks
    (1 September 2003)
    by MEJ Newman
    posted to social_networks by mrm on 2005-01-18 20:43:21 as read along with 12 people and 2 groups ilkert tjpp korakot rmj001 ansobol cantupaz deh ChaTo eldaly anon_pl cristinaalp iris_2001 Philosophy_of_Information Blog_and_Wiki_Research
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