msierk's library 52 articles Export

	Globin genes on the move [My Copy] Journal of Biology, Vol. 7 (20 November 2008), 35. by Ross C. Hardison posted to evolution globins by msierk on 2008-12-03 19:24:33 as along with 1 person bpcusack
	Origin of the nucleus and Ran-dependent transport to safeguard ribosome biogenesis in a chimeric cell [My Copy] Biology Direct, Vol. 3 (24 July 2008), 31. by Gaspar Jekely posted to evolution nucleus by msierk on 2008-11-14 17:23:41 as
	Allergic Pulmonary Inflammation Promotes the Recruitment of Circulating Tumor Cells to the Lung [My Copy] Cancer Res, Vol. 68, No. 20. (15 October 2008), pp. 8582-8589. by Anna G. Taranova, David Maldonado, Celine M. Vachon, et al.Elizabeth A. Jacobsen, Hiam Abdala-Valencia, Michael P. Mcgarry, Sergei I. Ochkur, Cheryl A. Protheroe, Alfred Doyle, Clive S. Grant, Joan Cook-Mills, Lutz Birnbaumer, Nancy A. Lee, James J. Lee posted to asthma cancer inflammation metastasis by msierk on 2008-11-14 17:20:20 as along with 1 person and 1 group Zephyrus Breast Cancer Reading Club
	Mitochondrial complex I inhibition is not required for dopaminergic neuron death induced by rotenone, MPP+, or paraquat [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (2008), pp. 15136-15141. by Won-Seok Choi, Shane E. Kruse, Richard D. Palmiter, Zhengui Xia posted to complexi inhibition mitochondria respiratory rotenone by msierk on 2008-11-14 17:18:02 as
	Origins and evolution of eukaryotic RNA interference. [My Copy] Trends in ecology & evolution (Personal edition) (18 August 2008) by Svetlana A A. Shabalina, Eugene V V. Koonin posted to evolutionary origins rnai by msierk on 2008-10-02 16:28:25 as along with 3 people and 1 group dandaman heliopais madhadron microRNA
	Emergent phenomena and the secrets of life. [My Copy] Journal of applied physiology (Bethesda, Md. : 1985), Vol. 104, No. 6. (June 2008), pp. 1844-1846. by P. T. Macklem posted to disease emergent life phenomena by msierk on 2008-09-05 16:50:56 as along with 1 person HugoMarcelo
	A critique of the molecular target-based drug discovery paradigm based on principles of metabolic control: Advantages of pathway-based discovery. [My Copy] Metab Eng (20 September 2007) by Marc K K. Hellerstein posted to control discovery drug metabolic by msierk on 2008-09-05 16:47:24 as along with 5 people and 2 groups guhjy Zephyrus barry Ema cmmorel Roswell Cancer Crosstalk McCammon
	On the origin of new genes in Drosophila [My Copy] Genome Research, Vol. 18, No. 9. (30 September 2008), pp. 1446-1455. by Qi Zhou, Guojie Zhang, Yue Zhang, et al.Shiyu Xu, Ruoping Zhao, Zubing Zhan, Xin Li, Yun Ding, Shuang Yang, Wen Wang posted to denovo drosophila genes protein by msierk on 2008-08-12 16:48:40 as along with 2 people operon isimpson
	De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae. [My Copy] Genetics, Vol. 179, No. 1. (May 2008), pp. 487-496. by J. Cai, R. Zhao, H. Jiang, W. Wang posted to denovo protein yeast by msierk on 2008-08-12 16:46:58 as along with 2 people cabbagesofdoom bpcusack
	Alternative splicing and protein structure evolution. [My Copy] Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 550-558. by F. Birzele, G. Csaba, R. Zimmer posted to alternative evolution protein splicing structure by msierk on 2008-08-04 21:38:18 as along with 3 people bootsy chad_davis balicea
	Defensins and the convergent evolution of platypus and reptile venom genes [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 986-994. by Camilla M. Whittington, Anthony T. Papenfuss, Paramjit Bansal, et al.Allan M. Torres, Emily S. W. Wong, Janine E. Deakin, Tina Graves, Amber Alsop, Kyriena Schatzkamer, Colin Kremitzki, Chris P. Ponting, Peter Temple-Smith, Wesley C. Warren, Philip W. Kuchel, Katherine Belov posted to defensins evolution protein by msierk on 2008-06-17 18:19:00 as along with 2 people cazmantis GustavoLacerda
	Recent progress in measuring structural similarity between proteins. [My Copy] Curr Protein Pept Sci, Vol. 8, No. 3. (June 2007), pp. 219-241. by O. Carugo posted to comparison protein structure by msierk on 2008-03-25 14:40:03 as
	An Evolutionarily Structured Universe of Protein Architecture [My Copy] Genome Res., Vol. 13, No. 7. (1 July 2003), pp. 1563-1571. by Gustavo Caetano-Anolles, Derek Caetano-Anolles posted to evolution protein structure by msierk on 2008-03-11 17:34:03 as along with 1 person tny
	The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure [My Copy] Journal of Molecular Evolution, Vol. 66, No. 1. (24 January 2008), pp. 21-35. by Feng-Jie Sun, Gustavo Caetano-Anollés posted to evolution luca structure trna by msierk on 2008-03-11 17:33:01 as along with 1 person smbe2008
	The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure [My Copy] Journal of Molecular Evolution, Vol. 66, No. 1. (2008) by Feng-Jie Sun, Gustavo Caetano-Anollés posted to evolution luca structure trna by msierk on 2008-03-11 17:28:37 as
	Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models [My Copy] BMC Bioinformatics, Vol. 9 (10 January 2008), 14. by Harald Binder, Martin Schumacher posted to biomedical clinical informatics models survival by msierk on 2008-02-29 18:38:00 as along with 3 people guhjy jfr shigepong
	Towards an automatic classification of protein structural domains based on structural similarity [My Copy] BMC Bioinformatics, Vol. 9, No. 74. (2008) by Vichetra posted to comparison protein scop structure by msierk on 2008-02-19 15:06:41 as
	Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions [My Copy] BMC Bioinformatics, Vol. 8 (15 November 2007), 444. by Haiyan Jiang, Christian Blouin posted to evolution protein structure by msierk on 2008-01-15 15:38:51 as along with 1 person robfsouza
	Retraction. [My Copy] Science, Vol. 314, No. 5807. (22 December 2006) by G. Chang, C. B. Roth, C. L. Reyes, O. Pornillos, Y. J. Chen, A. P. Chen posted to chang msba retraction structure by msierk on 2007-11-29 16:28:33 as
	SCIENTIFIC PUBLISHING: A Scientist's Nightmare: Software Problem Leads to Five Retractions [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1856-1857. by Greg Miller posted to chang msba retraction structure by msierk on 2007-11-29 16:27:36 as along with 1 person ramalldf
	Generation of germline-competent induced pluripotent stem cells [My Copy] Nature, Vol. 448, No. 7151. (06 June 2007), pp. 313-317. by Keisuke Okita, Tomoko Ichisaka, Shinya Yamanaka posted to cells pluripotent stem by msierk on 2007-11-20 17:23:36 as along with 2 people minghaolee sebastien_vigneau
	Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution [My Copy] Biology Direct, Vol. 2, No. 1. (28 June 2007), 17. by Jesse Bloom, Philip Romero, Zhongyi Lu, Frances Arnold posted to drift evolution function molecular neutral protein by msierk on 2007-10-02 19:28:32 as along with 5 people pablocarb pauldobson rabu msuarezdiez bpcusack
	Why Most Published Research Findings Are False [My Copy] PLoS Med, Vol. 2, No. 8. (30 August 2005), e124. by John P. A. Ioannidis posted to publication research statistics by msierk on 2007-10-02 18:44:49 as along with 96 people and 13 groups NicolasLescureux ulmer jphekman davebraze Sergey_gerbek cyounkin DavidG67 Horduna sona lord_weldaan rubenroa aaltenburger lafuente alexhakkinen NIlz polivares yyfwuhan zzb3886 amargoli CulCog jenniferwilms Stew eshirdel ckai1 monkare scmelton LSK thegoose johntdelaney virolog olberd robertlischke cobi flieder arsyed mrt2k9 schoeband steve3001 paleorthid pawelsobko mzkbnt memming mutesa donnachie apgaylard haloin bhengeveld yangjustinc jago Tomste richardh daforerog kristinchapman FeltonM7675 pengchy ajaymalik gbodner neteler mixedman Zephyrus rklancer guhjy sebpaquet garyfeng monod Borelli jmeppley chad_davis Najamuddin irinas indigoviolet mwyarbro ddahlem dullhunk madhadron balabu jiyu Imat lmi_swap chenlc03 biblio24 pratap kevinemamy cjeans feipan arne suizan jasonbobe austin lonettma buggle dnugent Malc elsbury shoshin achinerarias LIBrain Bioinformatics - CRUK raftlondon STS Method_Engineering_Services Convention on Knowledge Commons Anesthesia and Acute Pain UCD SILS IS40340 Research Practice Roswell Cancer Crosstalk ReadingLab EisenLab Sciences_communication_societe dIEMoSIRIS
	VISTAL--a new 2D visualization tool of protein 3D structural alignments [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2166-2167. by Rachel Kolodny, Barry Honig posted to 2d protein structure visualization by msierk on 2007-07-18 20:10:32 as along with 2 people dimka choonpeng
	A genome-wide association study identifies novel risk loci for type 2 diabetes. [My Copy] Nature, Vol. 445, No. 7130. (22 February 2007), pp. 881-885. by Robert Sladek, Ghislain Rocheleau, Johan Rung, et al.Christian Dina, Lishuang Shen, David Serre, Philippe Boutin, Daniel Vincent, Alexandre Belisle, Samy Hadjadj, Beverley Balkau, Barbara Heude, Guillaume Charpentier, Thomas J. Hudson, Alexandre Montpetit, Alexey V. Pshezhetsky, Marc Prentki, Barry I. Posner, David J. Balding, David Meyre, Constantin Polychronakos, Philippe Froguel posted to diabetes genetic genome loci type2 by msierk on 2007-06-08 20:39:03 as along with 14 people wagrob liqbbi ptrobajo jclau jbhiatt koller renewang jo_davies brant johncumbers joepickrell sim82 dbgrant mcgannd
	Mitochondrial complex I function affects halothane sensitivity in Caenorhabditis elegans. [My Copy] Anesthesiology, Vol. 101, No. 2. (August 2004), pp. 365-372. by E. B. Kayser, P. G. Morgan, M. M. Sedensky posted to anesthesia complexi mitochondria sensitivity by msierk on 2007-05-02 15:09:33 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Mapping the contribution of beta3-containing GABA(A) receptors to volatile and intravenous general anesthetic actions [My Copy] BMC Pharmacology, Vol. 7 (24 February 2007), 2. by Anja Zeller, Margarete Arras, Rachel Jurd, Uwe Rudolph posted to anesthesia effects gabaa receptor by msierk on 2007-05-02 15:07:17 as
	Understanding anesthesia: making genetic sense of the absence of senses. [My Copy] Hum Mol Genet, Vol. 11, No. 10. (15 May 2002), pp. 1241-1249. by J. A. Humphrey, M. M. Sedensky, P. G. Morgan posted to anesthesia effects genetic by msierk on 2007-05-02 15:06:27 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Mitochondrial defects and anesthetic sensitivity. [My Copy] Anesthesiology, Vol. 96, No. 5. (May 2002), pp. 1268-1270. by P. G. Morgan, C. L. Hoppel, M. M. Sedensky posted to anesthesia defect mitochondrial sensitivity by msierk on 2007-05-02 15:05:40 as
	Analysis of epistatic interactions and fitness landscapes using a new geometric approach. [My Copy] BMC evolutionary biology, Vol. 7 (13 April 2007), 60. by Niko Beerenwinkel, Lior Pachter, Bernd Sturmfels, Santiago F. Elena, Richard E. Lenski posted to evolutionary fitness landscape by msierk on 2007-05-02 13:13:34 as along with 6 people druvus maren Ayest ramensky elm pszw
	The genetic code is nearly optimal for allowing additional information within protein-coding sequences. [My Copy] Genome Res (9 February 2007) by Shalev Itzkovitz, Uri Alon posted to code coding genetic information protein by msierk on 2007-04-10 20:27:53 as along with 10 people and 2 groups kirasato gpalidwor madhadron raiyar grahamc raylim Minty gwenknight bpcusack ptrobajo Bioinformatics steinmetzlab
	A framework for protein structure classification and identification of novel protein structures [My Copy] BMC Bioinformatics, Vol. 7 (16 October 2006), 456. by You J. Kim, Jignesh M. Patel posted to protein classification structure by msierk on 2007-01-29 15:30:19 as along with 1 person blackbart
	Representing and comparing protein structures as paths in three-dimensional space [My Copy] BMC Bioinformatics, Vol. 7 (20 October 2006), 460. by Degui Zhi, Sri S. Krishna, Haibo Cao, Pavel Pevzner, Adam Godzik posted to structure similarity comparison by msierk on 2007-01-17 17:22:33 as along with 3 people aalibes bicko krishnaJCSG
	The effects of incomplete protein interaction data on structural and evolutionary inferences [My Copy] BMC Biology, Vol. 4 (03 November 2006), 39. by Eric de Silva, Thomas Thorne, Piers J. Ingram, et al.Ino Agrafioti, Jonathan Swire, Carsten Wiuf, Michael P. H. Stumpf posted to structure protein interaction evolution by msierk on 2007-01-17 17:17:48 as along with 1 person and 1 group cmm FAB-lab
	Arrestins: ubiquitous regulators of cellular signaling pathways [My Copy] Genome Biology, Vol. 7 (02 October 2006), 236. by Eugenia V. Gurevich, Vsevolod V. Gurevich posted to signalling protein family arrestins by msierk on 2007-01-17 17:16:47 as
	A fast SCOP fold classification system using content-based E-Predict algorithm [My Copy] BMC Bioinformatics, Vol. 7 (26 July 2006), 362. by Pin-Hao Chi, Chi-Ren Shyu, Dong Xu posted to classification fold scop by msierk on 2006-08-15 17:12:10 as
	Less is more: towards an optimal universal description of protein folds. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by J. D. Szustakowski, S. Kasif, Z. Weng posted to definition fold protein by msierk on 2006-07-19 18:14:52 as along with 3 people and 2 groups ana barry krishnaJCSG structural_bioinformatics Bioinformatics
	FAST: a novel protein structure alignment algorithm. [My Copy] Proteins, Vol. 58, No. 3. (15 February 2005), pp. 618-627. by J. Zhu, Z. Weng posted to alignment protein structure by msierk on 2006-07-19 18:13:20 as
	An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices [My Copy] BMC Bioinformatics, Vol. 7 (03 July 2006), 329. by Blazej Bulka, Marie Desjardins, Stephen J. Freeland posted to acid amino code evolution genetic by msierk on 2006-07-12 16:04:37 as
	Failing dogma and a sloppy code [My Copy] QJM, Vol. 96, No. 2. (1 February 2003), pp. 175-176. by Colin Berry posted to code evolution genetic protein by msierk on 2006-07-12 15:51:32 as along with 1 person jooce
	A tale of two ferredoxins: sequence similarity and structural differences [My Copy] BMC Structural Biology, Vol. 6 (09 April 2006), 8. by Sri S. Krishna, Ruslan I. Sadreyev, Nick V. Grishin posted to analogy fold sequence similarity structure by msierk on 2006-07-11 18:51:53 as
	Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds [My Copy] BMC Structural Biology, Vol. 6 (20 March 2006), 6. by Ruslan I. Sadreyev, Nick V. Grishin posted to analogy protein sequence similarity structure by msierk on 2006-07-11 18:50:51 as
	QUASARscoring and ranking of sequencestructure alignments [My Copy] Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4425-4426. by Fabian Birzele, Jan E. Gewehr posted to alignment scoring sequence structure by msierk on 2006-07-07 19:42:59 as along with 1 person dimka
	A structure-based method for protein sequence alignment. [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1451-1456. by M. G. Kann, P. A. Thiessen, A. R. Panchenko, A. A. Schäffer, S. F. Altschul, S. H. Bryant posted to alignment protein sequence structure by msierk on 2006-07-07 19:30:03 as
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted to evolution genomic by msierk on 2006-06-29 20:09:26 as along with 26 people and 10 groups operon daveGerrard inesdesantiago Ema karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin BergmanLab EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
	A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank [My Copy] BMC Evolutionary Biology, Vol. 6 (31 May 2006), 43. by Ugo Bastolla, Markus Porto, Eduardo H. Roman, Michele Vendruscolo posted to evolution protein structure by msierk on 2006-06-29 20:00:46 as along with 1 person insectopalo
	Protein homology detection by HMM-HMM comparison. [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 951-960. by J. Söding posted to alignment hmm sensitivity by msierk on 2006-06-28 18:17:34 as along with 4 people thegoose2 chad_davis tharris granujilla
	Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (15 April 2005) by M. Wistrand, E. L. Sonnhammer posted to hmm hmmer sam sensitivity by msierk on 2006-06-28 18:16:40 as along with 4 people albert_swart mdimmic rabio yoanjacquemin
	A sequence sub-sampling algorithm increases the power to detect distant homologues. [My Copy] Nucleic Acids Res, Vol. 33, No. 12. (2005), pp. 3772-3778. by C. R. Johnston, D. C. Shields posted to hmm hmmer sensitivity by msierk on 2006-06-28 18:15:34 as
	A high level interface to SCOP and ASTRAL implemented in Python [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by James Casbon, Gavin Crooks, Mansoor Saqi posted to astral protein python scop structure by msierk on 2006-06-13 19:45:37 as along with 2 people rabio krishnaJCSG

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origins	1

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