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mtagaya's library [569 articles]

Recent papers added to mtagaya's library ordered by importance.
  • MicroRNAs: genomics, biogenesis, mechanism, and function.
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 281-297.
    by DP Bartel
    posted to cluster microrna review by mtagaya on 2006-03-14 10:28:47 as ***** along with 4 people and 4 groups miguel marcius maryee shizhao Wikipedia Bioinformatics BioinfoCIPF SGU-CIPF
  • MicroRNA fingerprints during human megakaryocytopoiesis.
    Proc Natl Acad Sci U S A (20 March 2006)
    by Ramiro Garzon, Flavia Pichiorri, Tiziana Palumbo, Rodolfo Iuliano, Amelia Cimmino, Rami Aqeilan, Stefano Volinia, Darshna Bhatt, Hansjuerg Alder, Guido Marcucci, George A A Calin, Chang-Gong G Liu, Clara D D Bloomfield, Michael Andreeff, Carlo M M Croce
    posted to function microrna ncrna by mtagaya on 2006-07-13 07:51:47 as **** along with 1 person tardigrade
  • Clusters of internally primed transcripts reveal novel long noncoding RNAs.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by M Furuno, KC Pang, N Ninomiya, S Fukuda, MC Frith, C Bult, C Kai, J Kawai, P Carninci, Y Hayashizaki, JS Mattick, H Suzuki
    posted to cluster microrna ncrna by mtagaya on 2006-05-29 08:37:37 as **** along with 3 people and 4 groups dchughes bsmagic jayster4 Bioinformatics G4ID bioinplant Genetics-of-Gambling
  • Principles of MicroRNA-Target Recognition.
    PLoS Biol, Vol. 3, No. 3. (15 February 2005)
    by Julius Brennecke, Alexander Stark, Robert B B Russell, Stephen M M Cohen
    posted to microrna target by mtagaya on 2006-02-03 09:45:43 as **** along with 8 people and 2 groups ronnyherc jfr rklancer tardigrade andersbj cdawson heliopais tauberj microRNA GIG
  • Specificity of microRNA target selection in translational repression.
    Genes Dev, Vol. 18, No. 5. (1 March 2004), pp. 504-511.
    by JG Doench, PA Sharp
    posted to microrna target by mtagaya on 2006-02-03 09:44:47 as **** along with 3 people evaf ttjoseph tardigrade
  • MicroRNA expression profiles classify human cancers
    Nature, Vol. 435, No. 7043., pp. 834-838.
    by Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando, James R Downing, Tyler Jacks, Robert R Horvitz, Todd R Golub
    posted to cancer disorder microrna by mtagaya on 2006-03-14 10:37:45 as *** along with 10 people and 2 groups giovenko srp33 zhouyu tmmurali ajeffs tuck ealloza frohike capitall maralena microRNA Bioinformatics
  • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    Nature, Vol. aop, No. current. (30 January 2005)
    by Lee P Lim, Nelson C Lau, Philip Garrett-Engele, Andrew Grimson, Janell M Schelter, John Castle, David P Bartel, Peter S Linsley, Jason M Johnson
    posted to microarray microrna ncrna by mtagaya on 2006-02-03 09:49:46 as *** along with 15 people and 5 groups caseybrown jyuh jtextori sanjeevpillai jfr balicea tabu neveaire cgessmu ealloza skoch koller lp2 heliopais maralena Biostatistics Computational-Genomics Bioinformatics Neuroscience microRNA
  • Non-coding RNAs: new players in eukaryotic biology.
    Gene, Vol. 357, No. 2. (12 September 2005), pp. 83-94.
    by FF Costa
    posted to ncrna by mtagaya on 2006-02-03 09:31:15 as *** along with 3 people jwortman eckart_bindewald tardigrade
  • AU-Rich-Element-Mediated Upregulation of Translation by FXR1 and Argonaute 2.
    Cell, Vol. 128, No. 6. (23 March 2007), pp. 1105-1118.
    by Shobha Vasudevan, Joan A A Steitz
    posted to rnaa rna microrna by mtagaya on 2008-08-20 03:01:51 as ** along with 4 people mgantier braingrind gambarde neha_sarode
  • Argonautes and company: sailing against the wind.
    Cell, Vol. 128, No. 6. (23 March 2007), pp. 1027-1028.
    by SN Bhattacharyya, W Filipowicz
    posted to rnaa rna microrna by mtagaya on 2008-08-20 02:58:16 as ** along with 1 person tardigrade
  • RNA and microRNAs in fragile X mental retardation.
    Nature cell biology, Vol. 6, No. 11. (November 2004), pp. 1048-1053.
    by P Jin, RS Alisch, ST Warren
    posted to rnaa rna mirna by mtagaya on 2008-08-20 02:57:14 as **
  • MOLECULAR BIOLOGY: The Two Faces of miRNA
    Science, Vol. 318, No. 5858. (21 December 2007), pp. 1877-1878.
    by Ross J Buchan, Roy Parker
    posted to rnaa microrna by mtagaya on 2008-08-18 02:35:03 as ** along with 1 person maralena
  • Switching from Repression to Activation: MicroRNAs Can Up-Regulate Translation
    Science (29 November 2007), 1149460.
    by Shobha Vasudevan, Yingchun Tong, Joan A Steitz
    posted to rnaa microrna by mtagaya on 2008-08-18 02:34:07 as ** along with 12 people and 2 groups tmmurali jfr dayjm balicea dchughes sebastien_vigneau maximilianh heliopais oelemento wsjames delenca maralena microRNA Oxford Virology
  • The multifaceted small RNAs.
    RNA biology, Vol. 5, No. 2. (n 2008), pp. 61-64.
    by LC Li
    posted to rnaa rna by mtagaya on 2008-08-16 02:32:14 as **
  • Genistein induces the p21WAF1/CIP1 and p16INK4a tumor suppressor genes in prostate cancer cells by epigenetic mechanisms involving active chromatin modification.
    Cancer research, Vol. 68, No. 8. (15 April 2008), pp. 2736-2744.
    by S Majid, N Kikuno, J Nelles, E Noonan, Y Tanaka, K Kawamoto, H Hirata, LC Li, H Zhao, ST Okino, RF Place, D Pookot, R Dahiya
    posted to genistein epigenetic by mtagaya on 2008-08-16 02:30:23 as ** along with 1 person kengg
  • Up-regulation of p21WAF1/Cip1 by saRNA induces G1-phase arrest and apoptosis in T24 human bladder cancer cells.
    Cancer letters, Vol. 265, No. 2. (8 July 2008), pp. 206-214.
    by K Yang, XY Zheng, J Qin, YB Wang, Y Bai, QQ Mao, Q Wan, ZM Wu, LP Xie
    posted to rnaa rna by mtagaya on 2008-08-16 01:38:56 as **
  • Small interfering RNA-induced transcriptional gene silencing in human cells.
    Science (New York, N.Y.), Vol. 305, No. 5688. (27 August 2004), pp. 1289-1292.
    by KV Morris, SW Chan, SE Jacobsen, DJ Looney
    posted to sirna rnai by mtagaya on 2008-08-16 01:33:16 as **
  • Transcriptional activation by small RNA duplexes
    Nat Chem Biol, Vol. 3, No. 3. (March 2007), pp. 136-137.
    by John J Rossi
    posted to rnaa rna by mtagaya on 2008-08-15 04:15:23 as **
  • RNA interference: Hitting the on switch
    Nature, Vol. 448, No. 7156. (22 August 2007), pp. 855-858.
    by Erika Check
    posted to rnai rnaa by mtagaya on 2008-08-15 03:09:42 as ** along with 2 people jyuh cabbagezs
  • Genetics. Small RNAs reveal an activating side.
    Science, Vol. 314, No. 5800. (3 November 2006), pp. 741-742.
    by K Garber
    posted to rnaa rna by mtagaya on 2008-08-15 02:49:30 as ** along with 1 person tardigrade
  • A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA
    Nature (09 July 2008)
    by Monika Martick, Lucas H Horan, Harry F Noller, William G Scott
    posted to rna ribozyme by mtagaya on 2008-08-15 00:43:57 as ** along with 1 person djkt
  • NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12481-12486.
    by KD Taganov, MP Boldin, KJ Chang, D Baltimore
    posted to mir-146 by mtagaya on 2008-08-14 08:45:42 as ** along with 3 people maralena bootsy mgantier
  • Widespread changes in protein synthesis induced by microRNAs
    Nature (30 July 2008)
    by Matthias Selbach, Björn Schwanhäusser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky
    posted to rna mirna by mtagaya on 2008-08-14 03:17:49 as ** along with 4 people erel10 j_rodriguez reyez maralena
  • Gene regulation for higher cells: a theory.
    Science, Vol. 165, No. 891. (25 July 1969), pp. 349-357.
    by RJ Britten, EH Davidson
    posted to rnai rnaa rna by mtagaya on 2008-08-14 02:12:25 as ** along with 2 people ea tardigrade
  • Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
    Nat Chem Biol, Vol. 3, No. 3. (March 2007), pp. 166-173.
    by Bethany A Janowski, Scott T Younger, Daniel B Hardy, Rosalyn Ram, Kenneth E Huffman, David R Corey
    posted to rnai rnaa by mtagaya on 2008-08-14 02:04:17 as ** along with 3 people jyuh alwinpremanand maralena
  • Antitumor effect of dsRNA-induced p21(WAF1/CIP1) gene activation in human bladder cancer cells.
    Molecular cancer therapeutics, Vol. 7, No. 3. (March 2008), pp. 698-703.
    by Z Chen, RF Place, ZJ Jia, D Pookot, R Dahiya, LC Li
    posted to rnai rnaa by mtagaya on 2008-08-14 02:03:46 as **
  • Small dsRNAs induce transcriptional activation in human cells.
    Proc Natl Acad Sci U S A (3 November 2006)
    by Long-Cheng C Li, Steven T T Okino, Hong Zhao, Deepa Pookot, Robert F F Place, Shinji Urakami, Hideki Enokida, Rajvir Dahiya
    posted to rnai rnaa rna by mtagaya on 2008-08-14 02:01:42 as ** along with 6 people jyuh tardigrade alwinpremanand ishak xingxu maralena
  • RNAi and RNAa - The Yin and Yang of RNAome.
    Bioinformation, Vol. 2, No. 6. (2008), pp. 235-237.
    by PN Pushparaj, JJ Aarthi, SD Kumar, J Manikandan
    posted to rnai rnaa rna by mtagaya on 2008-08-14 01:59:53 as ** along with 1 person yoonk
  • Inferring microRNA activities by combining gene expression with microRNA target prediction.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by C Cheng, LM Li
    posted to target microrna bioinformatics by mtagaya on 2008-08-11 09:29:41 as ** along with 1 person bootsy
  • A computational screen for mouse signaling pathways targeted by microRNA clusters.
    RNA (New York, N.Y.) (29 May 2008)
    by Jianzhen Xu, Chiwai Wong
    posted to target microrna bioinformatics by mtagaya on 2008-08-11 09:28:39 as ** along with 3 people daforerog maralena bootsy
  • Molecular profiling of human prostate tissues: insights into gene expression patterns of prostate development during puberty.
    The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 19, No. 2. (February 2005), pp. 243-245.
    by SM Dhanasekaran, A Dash, J Yu, IP Maine, B Laxman, SA Tomlins, CJ Creighton, A Menon, MA Rubin, AM Chinnaiyan
    posted to bph by mtagaya on 2008-07-29 02:07:59 as **
  • Doxazosin induces apoptosis of benign and malignant prostate cells via a death receptor-mediated pathway.
    Cancer research, Vol. 66, No. 1. (1 January 2006), pp. 464-472.
    by JB Garrison, N Kyprianou
    posted to bph by mtagaya on 2008-07-29 02:02:46 as **
  • CXCL12 activates a robust transcriptional response in human prostate epithelial cells.
    The Journal of biological chemistry, Vol. 282, No. 37. (14 September 2007), pp. 26767-26774.
    by LA Begley, JW MacDonald, ML Day, JA Macoska
    posted to bph by mtagaya on 2008-07-22 09:31:20 as **
  • Interleukin-8 is a paracrine inducer of fibroblast growth factor 2, a stromal and epithelial growth factor in benign prostatic hyperplasia.
    The American journal of pathology, Vol. 159, No. 1. (July 2001), pp. 139-147.
    by D Giri, M Ittmann
    posted to bph by mtagaya on 2008-07-09 09:57:43 as **
  • The inflammatory microenvironment of the aging prostate facilitates cellular proliferation and hypertrophy.
    Cytokine (20 June 2008)
    by L A A Begley, S Kasina, J Macdonald, J A A Macoska
    posted to bph by mtagaya on 2008-07-09 09:49:34 as **
  • Gene network and canonical pathway analysis in prostate cancer: a microarray study.
    Experimental & molecular medicine, Vol. 40, No. 2. (30 April 2008), pp. 176-185.
    by H Savli, A Szendr, I Romics, B Nagy
    posted to microarray bph by mtagaya on 2008-07-09 09:46:17 as ** along with 1 person Borelli
  • The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
    Nature (07 May 2008)
    by Katsutomo Okamura, Wei-Jen Chung, Graham J Ruby, Huili Guo, David P Bartel, Eric C Lai
    posted to ncrna by mtagaya on 2008-06-06 01:08:06 as **
  • An endogenous small interfering RNA pathway in Drosophila
    Nature (07 May 2008)
    by Benjamin Czech, Colin D Malone, Rui Zhou, Alexander Stark, Catherine Schlingeheyde, Monica Dus, Norbert Perrimon, Manolis Kellis, James A Wohlschlegel, Ravi Sachidanandam, Gregory J Hannon, Julius Brennecke
    posted to ncrna by mtagaya on 2008-06-06 01:07:48 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Analysis of siRNA specificity on targets with double-nucleotide mismatches.
    Nucleic acids research (17 April 2008)
    by Cecilia Dahlgren, Hong-Yan Y Zhang, Quan Du, Maria Grahn, Gunnar Norstedt, Claes Wahlestedt, Zicai Liang
    posted to sirna off-target by mtagaya on 2008-05-22 10:07:15 as ** along with 1 person jyuh
  • Gene expression silencing with specific small interfering RNA goes beyond specificity a study of key parameters to take into account in the onset of small interfering RNA off-target effects
    FEBS Journal, Vol. 275, No. 11. (June 2008), pp. 2738-2753.
    by Vankoningsloo, Sebastien, De Longueville, Francoise, Evrard, Stephanie, Rahier, Pierre, Houbion, Andree, Fattaccioli, Antoine, Gastellier, Melanie, Remacle, Jose, Raes, Martine, Renard, Patricia, Arnould, Thierry
    posted to sirna off-target by mtagaya on 2008-05-22 10:07:01 as ** along with 1 person jyuh
  • Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing.
    RNA (8 May 2006)
    by Aimee L L Jackson, Julja Burchard, Devin Leake, Angela Reynolds, Janell Schelter, Jie Guo, Jason M M Johnson, Lee Lim, Jon Karpilow, Kim Nichols, William Marshall, Anastasia Khvorova, Peter S S Linsley
    posted to rnai off-target by mtagaya on 2008-05-01 09:05:08 as ** along with 2 people tardigrade lhonigberg
  • Experimental validation of the importance of seed complement frequency to siRNA specificity.
    RNA (New York, N.Y.), Vol. 14, No. 5. (May 2008), pp. 853-861.
    by EM Anderson, A Birmingham, S Baskerville, A Reynolds, E Maksimova, D Leake, Y Fedorov, J Karpilow, A Khvorova
    posted to sirna off-target by mtagaya on 2008-04-24 03:53:17 as **
  • Hidden layers of human small RNAs
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Hideya Kawaji, Mari Nakamura, Yukari Takahashi, Albin Sandelin, Shintaro Katayama, Shiro Fukuda, Carsten Daub, Chikatoshi Kai, Jun Kawai, Jun Yasuda, Piero Carninci, Yoshihide Hayashizaki
    posted to sirna rna microrna by mtagaya on 2008-04-23 04:27:28 as ** along with 3 people bertelsen maralena heliopais
  • Functional dissection of siRNA sequence by systematic DNA substitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect.
    Nucleic Acids Res (11 February 2008)
    by Kumiko Ui-Tei, Yuki Naito, Shuhei Zenno, Kenji Nishi, Kenji Yamato, Fumitaka Takahashi, Aya Juni, Kaoru Saigo
    posted to off-target sirna by mtagaya on 2008-04-17 15:13:21 as ** along with 3 people and 1 group jyuh sebastien_vigneau wsjames Oxford Virology
  • siRNA-mediated off-target gene silencing triggered by a 7 nt complementation
    Nucleic Acids Research, Vol. 33, No. 14. (2005), pp. 4527-4535.
    by Xiaoyu Lin, Xiaoan Ruan, Mark G Anderson, Jeffrey A Mcdowell, Paul E Kroeger, Stephen W Fesik, Yu Shen
    posted to off-target sirna by mtagaya on 2008-04-15 15:53:59 as **
  • A computational study of off-target effects of RNA interference
    Nucleic Acids Research, Vol. 33, No. 6. (2005), pp. 1834-1847.
    by Shibin Qiu, Coen M Adema, Terran Lane
    posted to off-target sirna by mtagaya on 2008-04-15 15:51:28 as ** along with 1 person jiny
  • A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1671-1677.
    by Quan Du, Hakan Thonberg, Jue Wang, Claes Wahlestedt, Zicai Liang
    posted to off-target sirna by mtagaya on 2008-04-15 15:44:15 as ** along with 1 person tardigrade
  • Analysis of microRNA-target interactions by a target structure based hybridization model.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 64-74.
    by D Long, CY Chan, Y Ding
    posted to microrna structure target by mtagaya on 2008-04-15 08:57:10 as ** along with 1 person jfr
  • Nonbacterial prostatitis caused by partial urethral obstruction in the rat.
    Urological research, Vol. 27, No. 5. (October 1999), pp. 346-350.
    by S Takechi, M Yokoyama, N Tanji, S Nishio, N Araki
    posted to hyperplasia by mtagaya on 2008-04-08 10:01:12 as **
  • Relevance of anti-reactive oxygen species activity to anti-inflammatory activity of components of eviprostat, a phytotherapeutic agent for benign prostatic hyperplasia.
    Phytomedicine : international journal of phytotherapy and phytopharmacology, Vol. 14, No. 7-8. (August 2007), pp. 465-472.
    by M Oka, M Tachibana, K Noda, N Inoue, M Tanaka, K Kuwabara
    posted to hyperplasia by mtagaya on 2008-04-08 09:53:48 as **
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