mtagaya's sirna [53 articles] Export

Recent papers added to mtagaya's library classified by the tag sirna. You can also see everyone's sirna.

	A comparison of siRNA efficacy predictors. [My Copy] Biochemical and biophysical research communications, Vol. 321, No. 1. (13 August 2004), pp. 247-253. by P. Saetrom, O. Snøve posted to bioinformatics rnai sirna by mtagaya on 2009-05-07 07:01:51 as
	Determinants of targeting by endogenous and exogenous microRNAs and siRNAs [My Copy] RNA, Vol. 13, No. 11. (1 November 2007), pp. 1894-1910. by Cydney B. Nielsen, Noam Shomron, Rickard Sandberg, Eran Hornstein, Jacob Kitzman, Christopher B. Burge posted to mirna off-target sirna by mtagaya on 2009-05-07 02:04:04 as along with 3 people and 1 group jfr lp2 heliopais microRNA
	Structural basis for 5[prime]-end-specific recognition of guide RNA by the A. fulgidus Piwi protein [My Copy] Nature, Vol. 434, No. 7033. (31 March 2005), pp. 666-670. by Jin-Biao Ma, Yu-Ren Yuan, Gunter Meister, Yi Pei, Thomas Tuschl, Dinshaw J. Patel posted to sirna by mtagaya on 2009-04-30 09:00:19 as along with 1 person tardigrade
	Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage. [My Copy] Mol Cell, Vol. 19, No. 3. (5 August 2005), pp. 405-419. by Y. R. Yuan, Y. Pei, J. B. Ma, et al.V. Kuryavyi, M. Zhadina, G. Meister, H. Y. Chen, Z. Dauter, T. Tuschl, D. J. Patel posted to sirna by mtagaya on 2009-04-30 09:00:15 as along with 1 person ttjoseph
	Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes [My Copy] Nature, Vol. 453, No. 7194. (10 April 2008), pp. 539-543. by Toshiaki Watanabe, Yasushi Totoki, Atsushi Toyoda, et al.Masahiro Kaneda, Satomi Kuramochi-Miyagawa, Yayoi Obata, Hatsune Chiba, Yuji Kohara, Tomohiro Kono, Toru Nakano, M. Azim Surani, Yoshiyuki Sakaki, Hiroyuki Sasaki posted to bioinformatics ncrna sirna by mtagaya on 2009-01-06 06:33:47 as along with 7 people jrhill sebastien_vigneau galka8_diploma rschulz eskay gjuggler inesdesantiago
	Small interfering RNA-induced transcriptional gene silencing in human cells. [My Copy] Science (New York, N.Y.), Vol. 305, No. 5688. (27 August 2004), pp. 1289-1292. by K. V. Morris, S. W. Chan, S. E. Jacobsen, D. J. Looney posted to rnai sirna by mtagaya on 2008-08-16 01:33:16 as
	Analysis of siRNA specificity on targets with double-nucleotide mismatches. [My Copy] Nucleic acids research (17 April 2008) by Cecilia Dahlgren, Hong-Yan Y. Zhang, Quan Du, et al.Maria Grahn, Gunnar Norstedt, Claes Wahlestedt, Zicai Liang posted to off-target sirna by mtagaya on 2008-05-22 10:07:15 as along with 1 person guhjy
	Gene expression silencing with specific small interfering RNA goes beyond specificity a study of key parameters to take into account in the onset of small interfering RNA off-target effects [My Copy] FEBS Journal, Vol. 275, No. 11. (June 2008), pp. 2738-2753. by Vankoningsloo, Sebastien, De Longueville, et al. Francoise, Evrard, Stephanie, Rahier, Pierre, Houbion, Andree, Fattaccioli, Antoine, Gastellier, Melanie, Remacle, Jose, Raes, Martine, Renard, Patricia, Arnould, Thierry posted to off-target sirna by mtagaya on 2008-05-22 10:07:01 as along with 1 person guhjy
	Experimental validation of the importance of seed complement frequency to siRNA specificity. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 5. (May 2008), pp. 853-861. by E. M. Anderson, A. Birmingham, S. Baskerville, et al.A. Reynolds, E. Maksimova, D. Leake, Y. Fedorov, J. Karpilow, A. Khvorova posted to off-target sirna by mtagaya on 2008-04-24 03:53:17 as
	Hidden layers of human small RNAs [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 157. by Hideya Kawaji, Mari Nakamura, Yukari Takahashi, et al.Albin Sandelin, Shintaro Katayama, Shiro Fukuda, Carsten Daub, Chikatoshi Kai, Jun Kawai, Jun Yasuda, Piero Carninci, Yoshihide Hayashizaki posted to microrna rna sirna by mtagaya on 2008-04-23 04:27:28 as along with 4 people gdb heliopais maralena bertelsen
	Functional dissection of siRNA sequence by systematic DNA substitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect. [My Copy] Nucleic Acids Res (11 February 2008) by Kumiko Ui-Tei, Yuki Naito, Shuhei Zenno, et al.Kenji Nishi, Kenji Yamato, Fumitaka Takahashi, Aya Juni, Kaoru Saigo posted to off-target sirna by mtagaya on 2008-04-17 15:13:21 as along with 3 people and 1 group sebastien_vigneau wsjames guhjy Oxford Virology
	siRNA-mediated off-target gene silencing triggered by a 7 nt complementation [My Copy] Nucl. Acids Res., Vol. 33, No. 14. (9 August 2005), pp. 4527-4535. by Xiaoyu Lin, Xiaoan Ruan, Mark G. Anderson, et al.Jeffrey A. McDowell, Paul E. Kroeger, Stephen W. Fesik, Yu Shen posted to off-target sirna by mtagaya on 2008-04-15 15:53:59 as
	A computational study of off-target effects of RNA interference [My Copy] Nucleic Acids Research, Vol. 33, No. 6. (2005), pp. 1834-1847. by Shibin Qiu, Coen M. Adema, Terran Lane posted to off-target sirna by mtagaya on 2008-04-15 15:51:28 as along with 3 people and 1 group thegoose2 tharris jiny C. elegans / WormBase
	A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites [My Copy] Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1671-1677. by Quan Du, Hakan Thonberg, Jue Wang, Claes Wahlestedt, Zicai Liang posted to off-target sirna by mtagaya on 2008-04-15 15:44:15 as along with 1 person tardigrade
	A systematic analysis of the effect of target RNA structure on RNA interference. [My Copy] Nucleic acids research, Vol. 35, No. 13. (2007), pp. 4322-4330. by E. M. Westerhout, B. Berkhout posted to sirna target by mtagaya on 2008-04-03 02:51:47 as along with 1 person puranjoy_b
	Effect of target secondary structure on RNAi efficiency [My Copy] RNA (7 August 2007), rna.546207. by Yu Shao, Chi Y. Chan, Anil Maliyekkel, Charles E. Lawrence, Igor B. Roninson, Ye Ding posted to sirna target by mtagaya on 2008-04-03 02:51:10 as along with 4 people puranjoy_b Hosna ilh fengqian
	Impact of target mRNA structure on siRNA silencing efficiency: A large-scale study. [My Copy] Biotechnology and bioengineering (1 February 2008) by Joseph A A. Gredell, Angela K K. Berger, S Patrick P. Walton posted to sirna target by mtagaya on 2008-04-03 02:50:44 as along with 2 people guhjy puranjoy_b
	siRNA target site secondary structure predictions using local stable substructures. [My Copy] Nucleic Acids Res, Vol. 33, No. 3. (2005) by B. S. Heale, H. S. Soifer, C. Bowers, J. J. Rossi posted to sirna structure target by mtagaya on 2008-02-26 08:47:43 as along with 1 person tardigrade
	Local RNA target structure influences siRNA efficacy: systematic analysis of intentionally designed binding regions. [My Copy] J Mol Biol, Vol. 348, No. 4. (13 May 2005), pp. 883-893. by S. Schubert, A. Grünweller, V. A. Erdmann, J. Kurreck posted to bioinformatics prediction sirna target by mtagaya on 2008-02-25 01:44:39 as
	Efficient siRNA selection using hybridization thermodynamics. [My Copy] Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 640-647. by Z. J. Lu, D. H. Mathews posted to bioinformatics sirna by mtagaya on 2008-02-05 06:03:15 as along with 3 people and 1 group Hosna puranjoy_b guhjy beta
	A probability-based approach for the analysis of large-scale RNAi screens [My Copy] Nature Methods, Vol. 4, No. 10. (09 September 2007), pp. 847-849. by Renate König, Chih-Yuan Chiang, Buu P. Tu, et al.Frank S. Yan, Paul D. Dejesus, Angelica Romero, Tobias Bergauer, Anthony Orth, Ute Krueger, Yingyao Zhou, Sumit K. Chanda posted to off-target sirna by mtagaya on 2008-01-22 02:57:59 as along with 2 people aviad_work guhjy
	Toxicogenomics of non-viral drug delivery systems for RNAi: potential impact on siRNA-mediated gene silencing activity and specificity. [My Copy] Adv Drug Deliv Rev, Vol. 59, No. 2-3. (30 March 2007), pp. 164-182. by S. Akhtar, I. Benter posted to rnai sirna by mtagaya on 2008-01-07 08:27:32 as along with 1 person guhjy
	Structural Basis for Double-Stranded RNA Processing by Dicer [My Copy] Science, Vol. 311, No. 5758. (13 January 2006), pp. 195-198. by Ian J. Macrae, Kaihong Zhou, Fei Li, et al.Adrian Repic, Angela N. Brooks, Zacheus W. Cande, Paul D. Adams, Jennifer A. Doudna posted to sirna by mtagaya on 2007-11-22 04:36:40 as along with 5 people and 2 groups bertelsen shuns dayjm marcius yavanna BioinfoCIPF SGU-CIPF
	Comparison of approaches for rational siRNA design leading to a new efficient and transparent method. [My Copy] Nucleic Acids Res (10 April 2007) by Olga Matveeva, Yury Nechipurenko, Leo Rossi, et al.Barry Moore, Pål Sætrom, Aleksey Y Y. Ogurtsov, John F F. Atkins, Svetlana A A. Shabalina posted to bioinformatics sirna by mtagaya on 2007-10-30 06:24:15 as along with 2 people guhjy tardigrade
	Thermodynamic instability of siRNA duplex is a prerequisite for dependable prediction of siRNA activities [My Copy] Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e123. by Masatoshi Ichihara, Yoshiki Murakumo, Akio Masuda, et al.Toru Matsuura, Naoya Asai, Mayumi Jijiwa, Maki Ishida, Jun Shinmi, Hiroshi Yatsuya, Shanlou Qiao, Masahide Takahashi, Kinji Ohno posted to sirna by mtagaya on 2007-10-26 01:17:31 as
	Distance constraints between microRNA target sites dictate efficacy and cooperativity. [My Copy] Nucleic Acids Res (27 March 2007) by Pål Sætrom, Bret S E S. Heale, Ola Snøve, Lars Aagaard, Jessica Alluin, John J J. Rossi posted to microrna off-target sirna by mtagaya on 2007-10-25 07:46:19 as along with 2 people and 1 group tardigrade andersbj microRNA
	More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature [My Copy] Nucl. Acids Res., Vol. 35, No. 2. (28 January 2007), pp. 433-440. by Istvan Ladunga posted to bioinformatics sirna by mtagaya on 2007-09-21 01:57:28 as along with 2 people puranjoy_b cthachuk
	Novel insights into RNAi off-target effects using C. elegans paralogs. [My Copy] BMC genomics, Vol. 8 (19 April 2007), 106. by Jean-François F. Rual, Niels Klitgord, Guillaume Achaz posted to bioinformatics off-target sirna by mtagaya on 2007-09-21 01:56:29 as along with 3 people and 1 group thegoose2 tharris guhjy C. elegans / WormBase
	Combinatorial RNAi for quantitative protein network analysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 16. (17 April 2007), pp. 6579-6584. by O. Sahin, C. Löbke, U. Korf, et al.H. Appelhans, H. Sültmann, A. Poustka, S. Wiemann, D. Arlt posted to bioinformatics sirna by mtagaya on 2007-09-21 01:56:03 as along with 1 person guhjy
	Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis [My Copy] BMC Bioinformatics, Vol. 8 (22 May 2007), 164. by Chun-Chi Liu, Chin-Chung Lin, Ker-Chau Li, et al.Wen-Shyen E. Chen, Jiun-Ching Chen, Ming-Te Yang, Pan-Chyr Yang, Pei-Chun Chang, Jeremy J. W. Chen posted to bioinformatics sirna by mtagaya on 2007-09-21 01:55:03 as
	Specific residues at every third position of siRNA shape its efficient RNAi activity. [My Copy] Nucleic Acids Res (26 January 2007) by Takayuki Katoh, Tsutomu Suzuki posted to sirna by mtagaya on 2007-09-20 07:13:41 as along with 3 people and 1 group guhjy bala tardigrade DictyosteliumGroup
	MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 17. (19 August 2003), pp. 9779-9784. by Yan Zeng, Rui Yi, Bryan R. Cullen posted to mirna off-target sirna by mtagaya on 2007-05-10 09:54:33 as along with 1 person marywaye
	Expression profiling reveals off-target gene regulation by RNAi. [My Copy] Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 635-637. by A. L. Jackson, S. R. Bartz, J. Schelter, et al.S. V. Kobayashi, J. Burchard, M. Mao, B. Li, G. Cavet, P. S. Linsley posted to bioinformatics off-target sirna by mtagaya on 2007-05-10 09:46:36 as along with 1 person Hosna
	Design of a genome-wide siRNA library using an artificial neural network [My Copy] Nature Biotechnology, Vol. 23, No. 8. (17 July 2005), pp. 995-1001. by Dieter Huesken, Joerg Lange, Craig Mickanin, et al.Jan Weiler, Fred Asselbergs, Justin Warner, Brian Meloon, Sharon Engel, Avi Rosenberg, Dalia Cohen, Mark Labow, Mischa Reinhardt, François Natt, Jonathan Hall posted to bioinformatics sirna by mtagaya on 2007-05-10 09:43:37 as along with 1 person tardigrade
	Design of siRNAs producing unstructured guide-RNAs results in improved RNA interference efficiency [My Copy] Nature Biotechnology, Vol. 23, No. 11. (30 October 2005), pp. 1440-1444. by Volker Patzel, Sascha Rutz, Isabell Dietrich, Christian Köberle, Alexander Scheffold, Stefan H. E. Kaufmann posted to bioinformatics sirna by mtagaya on 2007-05-10 09:41:54 as along with 3 people and 1 group puranjoy_b eckart_bindewald andersbj microRNA
	Efficient prediction of siRNAs with siRNArules 1.0: An open-source JAVA approach to siRNA algorithms. [My Copy] RNA (26 July 2006) by Torgeir Holen posted to bioinformatics sirna by mtagaya on 2007-05-10 09:38:50 as along with 2 people tardigrade mgantier
	Rational siRNA design for RNA interference. [My Copy] Nat Biotechnol, Vol. 22, No. 3. (March 2004), pp. 326-330. by A. Reynolds, D. Leake, Q. Boese, S. Scaringe, W. S. Marshall, A. Khvorova posted to bioinformatics sirna by mtagaya on 2007-05-10 09:37:19 as along with 1 person zebkhan
	In silico selection of active siRNA. [My Copy] Drug Discov Today, Vol. 12, No. 3-4. (February 2007), pp. 139-148. by V. Patzel posted to sirna by mtagaya on 2007-04-24 09:23:51 as along with 4 people puranjoy_b guhjy tardigrade bsmagic
	RNA interference using boranophosphate siRNAs: structure-activity relationships. [My Copy] Nucleic Acids Res, Vol. 32, No. 20. (2004), pp. 5991-6000. by A. H. Hall, J. Wan, E. E. Shaughnessy, B. Ramsay Shaw, K. A. Alexander posted to boranophosphate sirna by mtagaya on 2007-04-05 04:14:46 as
	High potency silencing by single-stranded boranophosphate siRNA. [My Copy] Nucleic Acids Res, Vol. 34, No. 9. (2006), pp. 2773-2781. by A. H. Hall, J. Wan, A. Spesock, Z. Sergueeva, B. R. Shaw, K. A. Alexander posted to boranophosphate sirna by mtagaya on 2007-04-05 04:14:18 as
	A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. [My Copy] Genes Dev, Vol. 19, No. 18. (15 September 2005), pp. 2164-2175. by M. Yoshikawa, A. Peragine, M. Y. Park, R. S. Poethig posted to plant sirna by mtagaya on 2006-11-17 09:18:23 as along with 2 people ozyjul natstreet
	Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. [My Copy] Mol Cell, Vol. 16, No. 1. (8 October 2004), pp. 69-79. by F. Vazquez, H. Vaucheret, R. Rajagopalan, et al.C. Lepers, V. Gasciolli, A. C. Mallory, J. L. Hilbert, D. P. Bartel, P. Crété posted to plant sirna by mtagaya on 2006-11-17 09:17:17 as along with 1 person ozyjul
	SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. [My Copy] Genes Dev, Vol. 18, No. 19. (1 October 2004), pp. 2368-2379. by A. Peragine, M. Yoshikawa, G. Wu, H. L. Albrecht, R. S. Poethig posted to plant sirna by mtagaya on 2006-11-17 09:15:40 as
	A Two-Hit Trigger for siRNA Biogenesis in Plants. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 565-577. by M. J. Axtell, C. Jan, R. Rajagopalan, D. P. Bartel posted to sirna by mtagaya on 2006-11-17 07:52:47 as along with 6 people and 4 groups natstreet bala andersbj cdawson kengg braingrind microRNA DictyosteliumGroup Plantandetc GIG
	siRNAs and DNA Methylation Do a Two-Step to Silence Tandem Sequences [My Copy] PLoS Biology, Vol. 4, No. 11. (1 November 2006) by Richard Robinson posted to methylation repeat sirna by mtagaya on 2006-11-17 01:18:10 as along with 1 person natstreet
	Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem Repeats. [My Copy] PLoS Biol, Vol. 4, No. 11. (24 October 2006) by Simon W-L W. Chan, Xiaoyu Zhang, Yana V V. Bernatavichute, Steven E E. Jacobsen posted to methylation repeat sirna by mtagaya on 2006-11-17 01:17:03 as along with 2 people micromassive braingrind
	Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation [My Copy] Nature (24 September 2006) by Yijun Qi, Xingyue He, Xiu-Jie Wang, Oleksiy Kohany, Jerzy Jurka, Gregory J. Hannon posted to argonaute sirna by mtagaya on 2006-10-27 02:55:07 as along with 2 people and 1 group tardigrade andersbj microRNA
	Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. [My Copy] Nat Struct Mol Biol (27 August 2006) by Daniel H H. Kim, Louisa M M. Villeneuve, Kevin V V. Morris, John J J. Rossi posted to rnai sirna by mtagaya on 2006-10-19 06:15:39 as along with 4 people ttjoseph tardigrade elzodw sebastien_vigneau
	Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes. [My Copy] RNA (14 June 2006) by Xiang Liu, Feng Jiang, Savitha Kalidas, Dean Smith, Qinghua Liu posted to dicer risc rnai sirna by mtagaya on 2006-08-18 02:53:12 as along with 1 person tardigrade
	Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras. [My Copy] Nature biotechnology, Vol. 24, No. 8. (25 August 2006), pp. 1005-1015. by J. O. McNamara, E. R. Andrechek, Y. Wang, et al.K. D. Viles, R. E. Rempel, E. Gilboa, B. A. Sullenger, P. H. Giangrande posted to aptamer delivery rnai sirna by mtagaya on 2006-08-18 02:52:04 as along with 3 people guhjy tardigrade mgantier

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ncrna	343
microrna	226
bioinformatics	106
snorna	70
sirna	53
rna	44
rnai	40
disorder	39
cluster	37
inflammation	36
target	31
microarray	30
off-target	29
genome	28
prediction	27
trna	27
bph	24
mirna	24
interferon	19
network	19
tlr	18
repeat	17
cancer	16
rnaa	16
aptamer	15
review	15
pirna	12
transcription	12
rasirna	11
database	10
imprinting	10
leukemia	10
kanpo	9
u14	9
sequence	8
splicing	8
virology	7
epigenetic	6
polymerase	6
telomerase	6
transcriptome	6
dleu2	5
neural	5
nfkb	5
structure	5
y	5
brain	4
exson_skipping	4
heart	4
hox	4
let-7	4
myogenesis	4
myostatin	4
phylogenetics	4
ribozyme	4
rrna	4
u17	4
urology	4
algorithm	3
alignment	3
antisense	3
ara-c	3
diabetes	3
drosha	3
endometriosis	3
evolution	3
expression	3
feedback	3
hbii-52	3
hdv	3
hyperplasia	3
ic	3
l7a	3
plant	3
risc	3
u36	3
xist	3
3utr	2
7sk	2
aatyk	2
argonaute	2
bc1	2
b-cell	2
boranophosphate	2
c_elegans	2
chemokine	2
c-myc	2
dna_methylation	2
dnmt3a	2
e2f	2
fft	2
fmrp	2
function	2
histone3	2
lung_cancer	2
methylation	2
mili	2
mir-206	2
mir-21	2
mirnp	2
miwi	2
pathway	2
piwi	2
polycistronic	2
processing	2
promoter	2
retrotransposition	2
rna_folding	2
snp	2
trp	2
u16	2
u24	2
u71	2
u82	2
14qi-ii	1
aca	1
adar	1
ago2	1
alu	1
antiapoptotic	1
antibio	1
apoptosis	1
bc200	1
bcl2	1
bic	1
circadian_clock	1
clcn5	1
colorectal_neoplasia	1
comment	1
conservation	1
deadenylation	1
delivery	1
dicer	1
dmso	1
e2f1	1
e3	1
emboss	1
etodolac	1
exportin5	1
fantom	1
genistein	1
gsrna	1
gtl2	1
hbii-85	1
hecth9	1
hiv	1
informatics	1
ips	1
malat-1	1
mir-1	1
mir-124a	1
mir-125b	1
mir-134	1
mir-146	1
mir-15	1
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mir-375	1
mitochondria	1
myod	1
neuroscience	1
nfat	1
nmr	1
notch	1
pain	1
polya	1
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ras	1
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tsix	1
u18	1
u2	1
u20	1
urgency	1
wii	1
xlsirt	1
zebrafish	1

mtagaya's sirna [53 articles] Export

mtagaya's tags