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mtagaya's watchlist [1000+ articles]

Recent papers matching mtagaya's watchlist criteria
  • The perfect storm of tiny RNAs
    Nature Medicine, Vol. 14, No. 10., pp. 1041-1045.
    by Gary Ruvkun
    posted to microrna by tmmurali on 2008-10-09 15:48:17 as **
  • The evolution of our thinking about microRNAs
    Nature Medicine, Vol. 14, No. 10., pp. 1036-1040.
    by Victor Ambros
    posted to microrna by tmmurali on 2008-10-09 15:44:39 as **
  • Concerted microRNA control of Hedgehog signalling in cerebellar neuronal progenitor and tumour cells
    The EMBO Journal, Vol. 27, No. current. (28 August 2008), pp. 2616-2627.
    by Elisabetta Ferretti, Enrico De Smaele, Evelina Miele, Pietro Laneve, Agnese Po, Marianna Pelloni, Arianna Paganelli, Lucia Di Marcotullio, Elisa Caffarelli, Isabella Screpanti, Irene Bozzoni, Alberto Gulino
    posted to microrna by heliopais on 2008-10-09 09:06:07 as **
  • Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells
    BMC Genomics, Vol. 9, No. Suppl 2. (16 September 2008), s22.
    by Guohua Wang, Yadong Wang, Weixing Feng, Xin Wang, Jack Yang, Yuming Zhao, Yue Wang, Yunlong Liu
    posted to transcription_factor microrna by heliopais on 2008-10-07 10:57:36 as ** along with 1 group microRNA
  • Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs
    PLoS Computational Biology, Vol. 4, No. 10. (3 October 2008), e1000189.
    by Ran Elkon, Reuven Agami
    posted to utr microrna microarray by heliopais on 2008-10-06 11:17:35 as ** along with 4 people and 2 groups druvus erel10 djkt giovanni microRNA BenosLab
  • Comparative Analysis of Structured RNAs in S. cerevisiae Indicates a Multitude of Different Functions
    BMC Biology, Vol. 5 (18 June 2007), 25.
    by Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F Stadler, Kay Nieselt
    posted to screen ncrna by samgj on 2008-10-06 10:38:22 as ** along with 3 people and 2 groups alexg dpollard andersbj EisenLab microRNA
  • Small is beautiful: microRNAs and breast cancer-where are we now?
    The Journal of pathology, Vol. 215, No. 3. (July 2008), pp. 214-221.
    by E Verghese, A Hanby, V Speirs, T Hughes
    posted to review microrna cancer breast by Zephyrus on 2008-10-05 21:04:45 as ** along with 2 people jfr eskay
  • Breast cancer metastasis: a microRNA story
    Breast Cancer Research, Vol. 10 (26 March 2008), 203.
    by Massimo Negrini, George A Calin
    posted to review microrna metastasis cancer breast by Zephyrus on 2008-10-05 20:40:41 as ** along with 1 person jfr
  • Oct4/Sox2-Regulated miR-302 Targets Cyclin D1 in Human Embryonic Stem Cells
    Mol. Cell. Biol., Vol. 28, No. 20. (15 October 2008), pp. 6426-6438.
    by Greer, Pratibha B Hebbar, Leping Li, Kevin W Trotter, Yoshihiro Komatsu, Yuji Mishina, Trevor K Archer
    posted to stemcells microrna by wsjames on 2008-10-05 16:58:10 as ** along with 1 group Oxford Virology
  • Differentiating human multipotent mesenchymal stromal cells regulate microRNAs: Prediction of microRNA regulation by PDGF during osteogenesis.
    Experimental Hematology (25 July 2008)
    by Loyal AA Goff, Shayne Boucher, Christopher LL Ricupero, Sara Fenstermacher, Mavis Swerdel, Lucas GG Chase, Christopher CC Adams, Jonathan Chesnut, Uma Lakshmipathy, Ronald PP Hart
    posted to networks microrna by heliopais on 2008-10-01 14:05:55 as ** along with 1 group microRNA
  • A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
    Proceedings of the National Academy of Sciences (23 September 2008)
    by Joshua J Forman, Aster Legesse-Miller, Hilary A Coller
    posted to microrna_target_prediction microrna by heliopais on 2008-10-01 13:44:43 as ** along with 1 person and 2 groups bootsy microRNA BenosLab
  • Sequence Relationships among C. elegans, D. melanogaster and Human microRNAs Highlight the Extensive Conservation of microRNAs in Biology
    PLoS ONE, Vol. 3, No. 7. (30 July 2008), e2818.
    by Carolina Ibáñez-Ventoso, Mehul Vora, Monica Driscoll
    posted to microrna evolution by heliopais on 2008-09-30 11:57:05 as ** along with 1 group microRNA
  • Imprinted noncoding RNAs.
    Mammalian genome : official journal of the International Mammalian Genome Society (25 September 2008)
    by Jo Peters, Joan E Robson
    posted to ncrna imprinting by samgj on 2008-09-29 19:21:29 as ** along with 1 person rschulz
  • Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
    Nucleic Acids Research, Vol. 34, No. 16. (31 August 2006), e17.
    by Jeppe Vinther, Mads MM Hedegaard, Paul PP Gardner, Jens SS Andersen, Peter Arctander
    posted to microrna_target_prediction microrna_silac microrna by heliopais on 2008-09-29 17:07:03 as ** along with 2 people and 1 group tardigrade andersbj microRNA
  • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    Genome Res. (7 November 2007), gr.6597907.
    by Graham J Ruby, Alexander Stark, Wendy K Johnston, Manolis Kellis, David P Bartel, Eric C Lai
    posted to ncrna mirna genomes drosophila 12 by hrogers on 2008-09-29 15:32:04 as *** along with 6 people and 2 groups stajich lp2 cabbagezs heliopais urgi Alexander_Kanitz microRNA Berkeley Mycology
  • Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites.
    Nucleic Acids Research, Vol. 36, No. 13. (26 June 2008), pp. 4277-4285.
    by Nan Li, Alex SS Flynt, Rosemary, Lilianna Solnica-Krezel, James GG Patton
    posted to microrna_target_architecture microrna by heliopais on 2008-09-26 13:34:24 as ** along with 2 people and 1 group bootsy daforerog microRNA
  • Dissecting microregulation of a master regulatory network
    BMC Genomics, Vol. 9 (23 February 2008), 88.
    by Amit U Sinha, Vivek Kaimal, Jing Chen, Anil G Jegga
    posted to p53 network microrna by pengchy on 2008-09-26 07:35:29 as **
  • RISC is a 5' phosphomonoester-producing RNA endonuclease.
    Genes and Development, Vol. 18, No. 9. (22 April 2004), pp. 975-980.
    by J Martinez, T Tuschl
    posted to microrna_modes_of_action microrna by heliopais on 2008-09-23 11:01:25 as ** along with 1 group microRNA
  • A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay.
    Nature, Vol. 432, No. 7013. (4 November 2004), pp. 112-118.
    by N Amrani, R Ganesan, S Kervestin, DA Mangus, S Ghosh, A Jacobson
    posted to microrna_modes_of_action microrna by heliopais on 2008-09-23 10:02:07 as ** along with 1 person and 1 group bpcusack microRNA
  • Messenger RNA regulation: to translate or to degrade.
    The EMBO journal, Vol. 27, No. 3. (6 February 2008), pp. 471-481.
    by AB Shyu, MF Wilkinson, A van Hoof
    posted to microrna_modes_of_action microrna by heliopais on 2008-09-23 09:51:34 as ** along with 2 people and 1 group MSchipper kieran101 microRNA
  • MicroRNA-10a Binds the 5'UTR of Ribosomal Protein mRNAs and Enhances Their Translation
    Molecular Cell, Vol. 30, No. 4. (23 May 2008), pp. 460-471.
    by Ulf A Ørom, Finn C Nielsen, Anders H Lund
    posted to microrna_activation microrna by heliopais on 2008-09-22 12:31:29 as ** along with 2 people and 1 group jonathanjacobs daforerog microRNA
  • Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development.
    PLoS ONE, Vol. 3, No. 9. (2008)
    by TH Huang, MJ Zhu, XY Li, SH Zhao
    posted to profiling porcine muscle microrna by pengchy on 2008-09-21 01:57:37 as **
  • Comparative genomics of small RNA regulatory pathway components in vector mosquitoes.
    BMC genomics, Vol. 9, No. 1. (18 September 2008)
    by Corey L Campbell, William C Black, Ann M Hess, Brian D Foy
    posted to small_rna phylogenetic pathway mosquito microrna by pengchy on 2008-09-21 01:36:41 as read along with 1 person imina
  • High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.
    PLoS ONE, Vol. 3, No. 9. (2008)
    by J Livny, H Teonadi, M Livny, MK Waldor
    posted to prediction ncrna bacteria by eskay on 2008-09-20 19:28:01 as ** along with 2 people and 1 group druvus stajich Berkeley Mycology
  • Molecular basis for target RNA recognition and cleavage by human RISC
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 101-112.
    by SL Ameres, J Martinez, R Schroeder
    posted to microrna_target_prediction microrna by heliopais to the group microRNA on 2008-09-19 16:53:59 as ****
  • Isolation of microRNA targets by miRNP immunopurification
    RNA, Vol. 13, No. 8. (25 June 2007), pp. 1198-1204.
    by George Easow, Aurelio A Teleman, Stephen M Cohen
    posted to mirnp_immunopurification microrna_target_prediction microrna by heliopais on 2008-09-19 14:00:52 as ** along with 1 group microRNA
  • The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function
    BMC Genomics, Vol. 8 (15 March 2007), 74.
    by Camilla Scheele, Natasa Petrovic, Mohammad A Faghihi, Timo Lassmann, Katarina Fredriksson, Olav Rooyackers, Claes Wahlestedt, Liam Good, James A Timmons
    posted to pink1 pd mitochondria microrna by psique on 2008-09-18 13:15:05 as **** along with 1 person and 1 group jfr parkinson's disease references
  • The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans.
    Genes and Development, Vol. 22, No. 18. (15 September 2008), pp. 2520-2534.
    by MC Ow, NJ Martinez, PH Olsen, HS Silverman, MI Barrasa, B Conradt, AJ Walhout, V Ambros
    posted to microrna_expression microrna by heliopais on 2008-09-17 17:03:52 as ** along with 1 group microRNA
  • A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.
    Genes and Development, Vol. 22, No. 18. (15 September 2008), pp. 2535-2549.
    by NJ Martinez, MC Ow, MI Barrasa, M Hammell, R Sequerra, L Doucette-Stamm, FP Roth, VR Ambros, AJ Walhout
    posted to networks microrna by heliopais on 2008-09-17 16:55:21 as ** along with 2 people and 1 group erel10 sebastien_vigneau microRNA
  • A microRNA signature for a BMP2-induced osteoblast lineage commitment program
    Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (10 September 2008), pp. 13906-13911.
    by Zhaoyong Li, Mohammad Q Hassan, Stefano Volinia, Andre J van Wijnen, Janet L Stein, Carlo M Croce, Jane B Lian, Gary S Stein
    posted to microrna by heliopais on 2008-09-17 15:12:55 as **** along with 1 group microRNA
  • Genomic Profiling of MicroRNA and Messenger RNA Reveals Deregulated MicroRNA Expression in Prostate Cancer
    Cancer Research, Vol. 68, No. 15. (1 August 2008), pp. 6162-6170.
    by Stefan Ambs, Robyn L Prueitt, Ming Yi, Robert S Hudson, Tiffany M Howe, Fabio Petrocca, Tiffany A Wallace, Chang-Gong Liu, Stefano Volinia, George A Calin, Harris G Yfantis, Robert M Stephens, Carlo M Croce
    posted to microrna_microarray microrna by heliopais on 2008-09-17 14:58:45 as ** along with 1 person and 1 group ealloza microRNA
  • Faulty old ideas about translational regulation paved the way for current confusion about how microRNAs function
    Gene, Vol. 423, No. 2. (22 July 2008), pp. 108-115.
    by Marilyn Kozak
    posted to review microrna by heliopais on 2008-09-17 14:54:19 as ** along with 1 group microRNA
  • A Cellular MicroRNA Mediates Antiviral Defense in Human Cells
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 557-560.
    by Charles-Henri Lecellier, Patrice Dunoyer, Khalil Arar, Jacqueline Lehmann-Che, Stephanie Eyquem, Christophe Himber, Ali Saib, Olivier Voinnet
    posted to rnai microrna human antiviral by shuzhens on 2008-09-16 20:56:32 as *****
  • MicroRNAs: new regulators of immune cell development and function
    Nat Immunol, Vol. 9, No. 8. (2008), pp. 839-845.
    by David Baltimore, Mark P Boldin, Ryan M O'Connell, Dinesh S Rao, Konstantin D Taganov
    posted to thesis regulation microrna immunology development confounder by Zephyrus on 2008-09-11 16:25:08 as ** along with 2 people and 1 group heliopais oelemento microRNA
  • SMAD proteins control DROSHA-mediated microRNA maturation
    Nature, Vol. 454, No. 7200. (11 June 2008), pp. 56-61.
    by Brandi N Davis, Aaron C Hilyard, Giorgio Lagna, Akiko Hata
    posted to microrna_expression microrna by heliopais on 2008-09-11 09:46:07 as ***** along with 4 people and 1 group jfr maralena daforerog caizhiqiang microRNA
  • Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000150.
    by Miler T Lee, Junhyong Kim
    posted to microrna by heliopais on 2008-09-08 17:43:34 as ** along with 3 people and 2 groups sabahkadri ealloza gdb BenosLab microRNA
  • Primary microRNA transcripts are processed co-transcriptionally
    Nature Structural & Molecular Biology, Vol. 15, No. 9. (31 August 2008), pp. 902-909.
    by Mariangela Morlando, Monica Ballarino, Natalia Gromak, Francesca Pagano, Irene Bozzoni, Nick J Proudfoot
    posted to processing mrna microrna exonuclease drosha cotranscription by sg45653 on 2008-09-07 04:07:50 as ** along with 2 people and 1 group caizhiqiang pengchy microRNA
  • Human-Specific Gain of Function in a Developmental Enhancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350.
    by Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal, Len A Pennacchio, Edward M Rubin, James P Noonan
    posted to ncrna har development by eskay on 2008-09-05 00:44:44 as **** along with 11 people and 1 group Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet isimpson maximilianh caseybrown Roswell Cancer Crosstalk
  • Target practice
    Nature Methods, Vol. 5, No. 9. (September 2008), pp. 749-750.
    posted to microrna_target_prediction microrna by heliopais on 2008-09-04 12:00:25 as ** along with 1 group microRNA
  • microRNAs—subtler than you think
    Nature Methods, Vol. 5, No. 9. (September 2008), pp. 753-753.
    by Natalie de Souza
    posted to microrna by heliopais on 2008-09-04 11:54:18 as ** along with 1 person and 1 group ChrisEvelo microRNA
  • Preferential regulation of duplicated genes by microRNAs in mammals
    Genome Biology, Vol. 9, No. 8. (2008)
    by Jingjing Li, Gabriel Musso, Zhaolei Zhang
    posted to target microrna by pengchy on 2008-09-04 06:53:41 as ** along with 7 people and 2 groups samgj heliopais natstreet sabahkadri djkt bpcusack fpattyn microRNA BenosLab
  • A toolkit for analysing large-scale plant small RNA datasets
    Bioinformatics (19 August 2008), btn428.
    by Simon Moxon, Frank Schwach, Dan Maclean, Tamas Dalmay, David J Studholme, Vincent Moulton
    posted to microrna tools by heliopais on 2008-08-21 19:40:03 as ** along with 1 group microRNA
  • mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.
    Nature methods (17 August 2008)
    by Molly Hammell, Dang Long, Liang Zhang, Andrew Lee, C Steven S Carmack, Min Han, Ye Ding, Victor Ambros
    posted to microrna prediction target by maralena on 2008-08-21 08:45:24 as ** along with 1 person and 1 group heliopais microRNA
  • Characterization of microRNA-regulated protein-protein interaction network.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1975-1979.
    by Chun-Wei W Hsu, Hsueh-Fen F Juan, Hsuan-Cheng C Huang
    posted to microrna network ppi by maralena on 2008-08-19 09:42:42 as ** along with 3 people jfr cabbagesofdoom daforerog
  • Epigenetic Silencing of MicroRNA-34b/c and B-Cell Translocation Gene 4 Is Associated with CpG Island Methylation in Colorectal Cancer
    Cancer Res, Vol. 68, No. 11. (1 June 2008), pp. 4123-4132.
    by Minoru Toyota, Hiromu Suzuki, Yasushi Sasaki, Reo Maruyama, Kohzoh Imai, Yasuhisa Shinomura, Takashi Tokino
    posted to cancer epigenetic microrna mir-34 by maralena on 2008-08-19 09:38:05 as **
  • Epigenetic silencing of the intronic microRNA hsa-miR-342 and its host gene EVL in colorectal cancer
    Oncogene, Vol. aop, No. current.
    by WM Grady, RK Parkin, PS Mitchell, JH Lee, YH Kim, KD Tsuchiya, MK Washington, C Paraskeva, JKV Willson, AM Kaz, EM Kroh, A Allen, BR Fritz, SD Markowitz, M Tewari
    posted to cancer epigentic evl human microrna mir-342 by maralena on 2008-08-19 09:24:54 as ** along with 1 person bootsy
  • An intronic microRNA silences genes that are functionally antagonistic to its host gene
    Nucl. Acids Res. (6 August 2008), gkn513.
    by Sailen Barik
    posted to host intronic microrna by maralena on 2008-08-18 08:37:00 as ** along with 4 people bpcusack megraw daforerog bootsy
  • A cyclin D1/microRNA 17/20 regulatory feedback loop in control of breast cancer cell proliferation.
    The Journal of cell biology, Vol. 182, No. 3. (11 August 2008), pp. 509-517.
    by Z Yu, C Wang, M Wang, Z Li, MC Casimiro, M Liu, K Wu, J Whittle, X Ju, T Hyslop, P McCue, RG Pestell
    posted to cancer cluster cyclin feedback microrna mir-17 mir-20 proliferation by maralena on 2008-08-18 08:33:14 as **
  • Computational analysis of miRNA-mediated repression of translation: implications for models of translation initiation inhibition.
    RNA (New York, N.Y.), Vol. 14, No. 8. (August 2008), pp. 1480-1491.
    by T Nissan, R Parker
    posted to microrna model repression by pengchy on 2008-08-17 03:55:29 as ** along with 2 people and 1 group heliopais erel10 microRNA
  • Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 521-533.
    by Alexander Marson, Stuart S Levine, Megan F Cole, Garrett M Frampton, Tobias Brambrink, Sarah Johnstone, Matthew G Guenther, Wendy K Johnston, Marius Wernig, Jamie Newman, Mauro J Calabrese, Lucas M Dennis, Thomas L Volkert, Sumeet Gupta, Jennifer Love, Nancy Hannett, Phillip A Sharp, David P Bartel, Rudolf Jaenisch, Richard A Young
    posted to microrna transcriptional_factor by pengchy on 2008-08-17 03:24:13 as ** along with 6 people and 1 group heliopais ealloza megraw bootsy maralena gdb microRNA
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