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Extending KNIME for next-generation sequencing data analysis

by: Bernd Jagla, Bernd Wiswedel, Jean-Yves Coppée
Bioinformatics, Vol. 27, No. 20. (15 October 2011), pp. 2907-2909, doi:10.1093/bioinformatics/btr478  Key: citeulike:9725831

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Abstract

Summary: KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework.Availability: All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing.Contact: bernd.jagla@pasteur.frSupplementary Information: Supplementary data are available at Bioinformatics online.


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