n00c's library 357 articles Export

	Nature Protocols: Genome resequencing and identification of variations by Illumina Genome Analyzer Reads [My Copy] by Jun Wang, Ruiqiang Li, Yingrui Li, Xiaodong Fang, Binxiao Feng, Jun Li posted to variant-calling variant solexa soapsnp snp-discovery snp resequencing illumina by n00c on 2009-11-20 20:57:20 as
	Searching for SNPs with cloud computing [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R134. by Ben Langmead, Michael Schatz, Jimmy Lin, Mihai Pop, Steven Salzberg posted to soapsnp snp-discovery snp crossbow cloud-computing bowtie by n00c on 2009-11-20 20:54:53 as
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to tool software resequencing mapper map genome bfast alignment algorithm by n00c on 2009-11-18 22:33:20 as along with 5 people friendpine zwang druvus torfinnnome idonaldson
	Comprehensive resequence analysis of a 97 kb region of chromosome 10q11.2 containing the MSMB gene associated with prostate cancer [My Copy] Human Genetics (31 July 2009) by Meredith Yeager, Zuoming Deng, Joseph Boland, et al.Casey Matthews, Jennifer Bacior, Victor Lonsberry, Amy Hutchinson, Laura Burdett, Liqun Qi, Kevin Jacobs, Jesus Gonzalez-Bosquet, Sonja Berndt, Richard Hayes, Robert Hoover, Gilles Thomas, David Hunter, Michael Dean, Stephen Chanock posted to variant-calling target-region snp-calling resequencing mosaik 454 by n00c on 2009-11-16 23:28:24 as along with 1 person xingxu
	A block-sorting lossless data compression algorithm. [My Copy] No. 124. (1994) by M. Burrows, D. J. Wheeler posted to compression bwt burrows-wheeler algorithm by n00c on 2009-11-12 17:55:38 as along with 6 people and 2 groups kistijantoro stanley rahul michaelmampaey msakai langmead SRL ADMiRes
	Predicting Human Minisatellite Polymorphism [My Copy] Genome Research, Vol. 13, No. 5. (1 May 2003), pp. 856-867. by France Denoeud, Gilles Vergnaud, Gary Benson posted to tandem-repeats tandem polymorphism minisatellites by n00c on 2009-11-09 23:00:39 as
	The HuRef Browser: a web resource for individual human genomics [My Copy] Nucl. Acids Res., Vol. 37, No. Database issue. (26 November 2008), gkn939. by Nelson Axelrod, Yuan Lin, Pauline C. Ng, et al.Timothy B. Stockwell, Jonathan Crabtree, Jiaqi Huang, Ewen Kirkness, Robert L. Strausberg, Marvin E. Frazier, J. Craig Venter, Saul Kravitz, Samuel Levy posted to venter huref genome browser by n00c on 2009-11-09 21:40:24 as along with 3 people daforerog operon guhjy
	TRDB--the Tandem Repeats Database. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D80-D87. by Yevgeniy Gelfand, Alfredo Rodriguez, Gary Benson posted to trdb tandem-repeats tandem lbi database by n00c on 2009-11-07 16:50:40 as
	1000 Genomes project [My Copy] Nat Biotech, Vol. 26, No. 3. (01 March 2008), pp. 256-256. by Nayanah Siva posted to tpgp genome 1000-genomes by n00c on 2009-11-06 19:34:24 as along with 4 people balajis mqbphcw3 maralena psique
	Cataloging Coding Sequence Variations in Human Genome Databases [My Copy] PLoS ONE, Vol. 3, No. 10. (30 October 2008), e3575. by Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim posted to variation tpgp sequence genome database by n00c on 2009-11-06 18:54:18 as along with 1 person daforerog
	The YH database: the first Asian diploid genome database [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D1025-1028. by Guoqing Li, Lijia Ma, Chao Song, et al.Zhentao Yang, Xiulan Wang, Hui Huang, Yingrui Li, Ruiqiang Li, Xiuqing Zhang, Huanming Yang, Jian Wang, Jun Wang posted to yh tpgp individual-human-genome genome database asian by n00c on 2009-11-06 18:49:27 as along with 1 person guhjy
	All about Craig: the first 'full' genome sequence [My Copy] Nature, Vol. 449, No. 7158. (05 September 2007), pp. 6-7. by Heidi Ledford posted to venter tpgp sequence individual-human-genome genome by n00c on 2009-11-06 18:47:30 as
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to variation structure sequencing genome combinatorics algorithm by n00c on 2009-11-06 17:06:53 as along with 17 people hzoltan rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	Genome assembly forensics: finding the elusive mis-assembly [My Copy] Genome Biology, Vol. 9, No. 3. (14 March 2008), R55. by Adam Phillippy, Michael Schatz, Mihai Pop posted to misassembly genome assembly by n00c on 2009-11-06 17:05:47 as along with 10 people and 1 group Thaverkamp kiekyon dakelley jasontsai orzenil druvus fernan lp2 Neeperando GustavoLacerda DeNovoAssembly-SIMR
	Mobile elements create structural variation: Analysis of a complete human genome [My Copy] Genome Research, Vol. 19, No. 9. (13 September 2009), pp. 1516-1526. by Jinchuan Xing, Yuhua Zhang, Kyudong Han, et al.Abdel H. Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, Lynn B. Jorde posted to variation structure human genome element by n00c on 2009-11-06 17:04:35 as along with 10 people and 1 group operon djkt sameersoi APRegier dchughes fenghezi jandot Dulcinea natstreet JustinCrocker Journal picks
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp-discovery snp sequencing pipeline ingap coverage 454 by n00c on 2009-11-02 21:10:08 as along with 4 people jasontsai natstreet heliopais druvus
	TileQC: A system for tile-based quality control of Solexa data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 250. by Peter Dolan, Dee Denver posted to tileqc tile solexa quality illumina by n00c on 2009-10-30 21:52:49 as along with 7 people heliopais magusina neils reyez mdimon slevy03 caseybrown
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to variant structure sequencing mapping genome cnv by n00c on 2009-10-30 19:28:05 as along with 35 people and 2 groups hzoltan daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Estimating population haplotype frequencies from pooled SNP data using incomplete database information. [My Copy] Bioinformatics (Oxford, England) (27 October 2009) by Matti Pirinen posted to snp population pooling haplotype frequency bayesian by n00c on 2009-10-30 19:22:48 as
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing review resequencing mapping assembly alignment by n00c on 2009-10-30 19:15:41 as along with 13 people and 1 group pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor venancio desany Orengo Group Journal Picks
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to variant structure resequencing by n00c on 2009-10-30 19:03:36 as along with 17 people and 2 groups seb1 pst owenlancaster robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong gdv desany qayub Orengo Group Journal Picks Journal picks
	The igraph library for complex network research [My Copy] posted to software r network library igraph graph-theory by n00c on 2009-10-29 10:22:17 as
	Weighted Connected Component Clustering [My Copy] by Chris Mueller posted to graph-theory graph connected-component clustering algorithm by n00c on 2009-10-29 10:03:41 as
	Single-molecule sequencing of an individual human genome [My Copy] Nature Biotechnology, Vol. 27, No. 9. (10 August 2009), pp. 847-850. by Dmitry Pushkarev, Norma F. Neff, Stephen R. Quake posted to single-molecule individual-human-genome helicos genome 3rd-generation by n00c on 2009-10-28 23:04:32 as along with 25 people and 3 groups JamesBarger ethanmj MurphysLab leliavski inesdesantiago fenghezi megraw kintoki neils daforerog gangcai mqbphcw3 jmanning2k jonilaserson druvus alexknight qayub natstreet mtagaya kinestetika guhjy installe psique SeaBird danmaclean Journal picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen Bioinformatics
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing [My Copy] Bioinformatics (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to short-read map gnumap algorithm by n00c on 2009-10-28 23:01:09 as along with 4 people darian operon heliopais druvus
	Recurring mutations found by sequencing an acute myeloid leukemia genome. [My Copy] The New England journal of medicine, Vol. 361, No. 11. (10 September 2009), pp. 1058-1066. by Elaine R. Mardis, Li Ding, David J. Dooling, et al.David E. Larson, Michael D. McLellan, Ken Chen, Daniel C. Koboldt, Robert S. Fulton, Kim D. Delehaunty, Sean D. McGrath, Lucinda A. Fulton, Devin P. Locke, Vincent J. Magrini, Rachel M. Abbott, Tammi L. Vickery, Jerry S. Reed, Jody S. Robinson, Todd Wylie, Scott M. Smith, Lynn Carmichael, James M. Eldred, Christopher C. Harris, Jason Walker, Joshua B. Peck, Feiyu Du, Adam F. Dukes, Gabriel E. Sanderson, Anthony M. Brummett, Eric Clark, Joshua F. McMichael, Rick J. Meyer, Jonathan K. Schindler, Craig S. Pohl, John W. Wallis, Xiaoqi Shi, Ling Lin, Heather Schmidt, Yuzhu Tang, Carrie Haipek, Madeline E. Wiechert, Jolynda V. Ivy, Joelle Kalicki, Glendoria Elliott, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark A. Watson, Jack Baty, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Daniel C. Link, Matthew J. Walter, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson, Timothy J. Ley posted to tpgp mutation leukemia individual-human-genome genome aml by n00c on 2009-10-28 22:54:37 as along with 8 people and 2 groups absterga woodson8 fenghezi ericsuh polivares prensner frohike jbhiatt JLab BergmanLab
	DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 66-72. by Timothy J. Ley, Elaine R. Mardis, Li Ding, et al.Bob Fulton, Michael D. McLellan, Ken Chen, David Dooling, Brian H. Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E. Larson, Dan C. Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, LaDeana W. Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R. Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson posted to tpgp sequence leukemia individual-human-genome genome aml by n00c on 2009-10-28 22:52:15 as along with 16 people tommcdonagh jonilaserson jessopher frohike jfr vmsr yupu kentsis suteedee lewista reyez caseybrown pkonings rodney davfre djkt
	A highly annotated whole-genome sequence of a Korean individual [My Copy] Nature, Vol. advance online publication, No. 7258. (08 July 2009), pp. 1011-1015. by Jong-Il Kim, Young S. Ju, Hansoo Park, et al.Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun N. Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi K. Lee, Hyunjun Park, Jeong Y. Kim, Omer Gokcumen, Ryan E. Mills, Alexander W. Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore, Jeong-Sun Seo posted to tpgp sequence individual-human-genome genome by n00c on 2009-10-28 22:49:41 as along with 8 people and 1 group fenghezi nicolesoranzo mtagaya reyez pkonings psique djkt jbhiatt Journal picks
	The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group [My Copy] Genome Research, Vol. 19, No. 9. (24 September 2009), pp. 1622-1629. by Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, et al.Deokhoon Kim, Ho Ghang, Dae-Soo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong S. Lee, Sangsoo Kim, Rohit Reja, Sungwoong Jho, Chang G. Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee, Jong Bhak, Seong-Jin Kim posted to tpgp sequence individual-human-genome genome by n00c on 2009-10-28 22:46:48 as along with 5 people and 1 group ppgardne djkt fenghezi jessopher daforerog Journal picks
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to tpgp sequence individual-human-genome genome asian by n00c on 2009-10-28 20:16:15 as along with 15 people rshe fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	The Diploid Genome Sequence of an Individual Human [My Copy] PLoS Biol, Vol. 5, No. 10. (4 September 2007), e254. by Samuel Levy, Granger Sutton, Pauline C. Ng, et al.Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. MacDonald, Andy W. Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A. Kravitz, Dana A. Busam, Karen Y. Beeson, Tina C. McIntosh, Karin A. Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter posted to venter tpgp sequence individual-human-genome genome by n00c on 2009-10-28 20:14:44 as along with 30 people and 1 group jgill pachorip Scis0000002 daforerog jessopher psique dakelley noushin jo_davies frohike adijr Neeperando operon carlblesius bpb balicea skhadar dullhunk djkt jackjackjjj ramensky massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to short-read paired-end genome de-brujin bacterial assembly allpaths2 allpaths by n00c on 2009-10-28 13:10:39 as along with 10 people and 1 group djkt azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	NGSView: an extensible open source editor for next-generation sequencing data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp611. by Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub posted to viewer tool software sequencing open-source ngsview by n00c on 2009-10-28 12:44:41 as along with 3 people operon heliopais druvus
	Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2865-2871. by Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning posted to short-read pindel paired-end breakpoints by n00c on 2009-10-22 19:40:11 as along with 5 people torfinnnome dakelley natstreet druvus vplagnol
	The theory of discovering rare variants via DNA sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 485. by Michael Wendl, Richard Wilson posted to variant snp-discovery snp sequencing by n00c on 2009-10-21 18:35:21 as along with 4 people jasontsai jsatkosk merpublic druvus
	Diploid Human Genome Browser \| HuRef 1.0 \| Home [My Copy] posted to venter huref human genome browser by n00c on 2009-10-20 22:48:21 as
	OSLay: optimal syntenic layout of unfinished assemblies [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1573-1579. by Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson posted to oslay np-complete assembly by n00c on 2009-10-19 16:08:56 as along with 4 people dakelley AaronDarling azazello GustavoLacerda
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to variation solid solexa roche review mosaik illumina false-positive comparison abi 454 by n00c on 2009-10-19 16:04:09 as along with 5 people and 1 group operon jwfoley skembel djkt natstreet iSEEM
	Why greed works for shortest common superstring problem [My Copy] Theoretical Computer Science (15 September 2009) by Bin Ma posted to scs np-complete greed assembly algorithm by n00c on 2009-10-16 04:38:35 as along with 2 people seb1 Neeperando
	The Elements of Statistical Learning [My Copy] (2009) by Trevor Hastie, Robert Tibshirani, Jerome Friedman posted to textbook statistics prediction mining inference data book by n00c on 2009-10-16 04:27:25 as
	Parametric complexity of sequence assembly: theory and applications to next generation sequencing. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 7. (July 2009), pp. 897-908. by Niranjan Nagarajan, Mihai Pop posted to no-tag by n00c on 2009-10-13 20:22:27 as along with 3 people dakelley sitalange nuin
	Is sequencing enlightenment ending the dark age of the transcriptome? [My Copy] Nature Methods, Vol. 6, No. 10. (01 October 2009), pp. 711-713. by Piero Carninci posted to transcriptome sequencing rna-seq by n00c on 2009-10-13 20:22:23 as along with 5 people inesdesantiago heliopais druvus megraw maren
	Correcting base-assignment errors in repeat regions of shotgun assembly. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 4, No. 1. (r 2007), pp. 54-64. by Degui Zhi, Uri Keich, Pavel Pevzner, Steffen Heber, Haixu Tang posted to sequencing repeats euler base-calling assembly by n00c on 2009-10-13 20:22:18 as along with 2 people dakelley ojabado
	Sequencing of natural strains of Arabidopsis thaliana with short reads [My Copy] Genome Research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 10 people and 2 groups APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Basic Bayesian Methods [My Copy] Topics in Biostatistics (2007), pp. 319-338. by Mark E. Glickman, David A. Dyk posted to statistics methods bayesian by n00c on 2009-10-06 17:03:14 as along with 2 people Borelli guhjy
	Genotyping of James Watson from Low-coverage Sequencing Data [My Copy] by Sanjiv Dinakar, Yözen Hernández posted to watson snp-discovery snp-calling snp resequencing presentation genotyping coverage bayesian by n00c on 2009-10-05 16:44:36 as
	Working with SFF Files from 454 Genome Sequencer FLX [My Copy] posted to sff matlab mathworks fastq 454 by n00c on 2009-10-03 20:02:07 as
	Calling Sequencing SNPs [My Copy] posted to solexa snp-calling snp illumina casava bayesian by n00c on 2009-10-02 15:38:00 as
	Aspects of coverage in medical DNA sequencing [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (16 May 2008), 239. by Michael Wendl, Richard Wilson posted to sequencing coverage by n00c on 2009-10-01 20:25:28 as along with 2 people sandfire Neeperando
	Discovering genetic polymorphisms in next-generation sequencing data [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (May 2009), pp. 312-317. by Michael Imelfort, Chris Duran, Jacqueline Batley, David Edwards posted to snp-discovery snp review 2nd-generation by n00c on 2009-10-01 16:20:21 as along with 2 people orzenil darian

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nussinov	2
organization	2
paired-end	2
paired-ends	2
pdf	2
phred	2
pyrobayes	2
registry	2
report	2
rmap	2
seed	2
segemehl	2
sff	2
single-molecule	2
soap	2
sudoku	2
technology	2
tfs	2
tutorial	2
user-group	2
validation	2
variant-calling	2
venn-diagram	2
virus	2
watson	2
waxman	2
1000-genomes	1
2nd-generation	1
abyss	1
allpaths2	1
alphabet	1
alta-cyclic	1
analysis	1
annotation	1
arabidopsis	1
array	1
asssembly	1
asymptotic	1
avid	1
bachmann-landau	1
bank	1
barcoding	1
bayescall	1
bfast	1
bibliography	1
big-o	1
binding	1
biohaskell	1
biomart	1
blast	1
blat	1
bound	1
boyer-moore	1
breakpoints	1
bustard	1
bwt	1
bwt-sw	1
cancer	1
cap3	1
capture	1
casava	1
cdna	1
chemistry	1
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cluster	1
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cnv-seq	1
color	1
computer-science	1
conference	1
connected-component	1
consed	1
consensus	1
crossbow	1
csa	1
datamining	1
depth-of-coverage	1
detection	1
dibase	1
difference	1
direct-rna-seq	1
disorder	1
dynamic-programming	1
eagleview	1
ebi	1
eland	1
element	1
enrichment	1
euler	1
exome	1
factor-oracle	1
false-positive	1
faq	1
fastq	1
file	1
findpeaks	1
finite-automaton	1
firefox	1
fm-kz	1
forage	1
format	1
forum	1
framework	1
frequency	1
f-seq	1
function	1
galign	1
gamma-distribution	1
gap	1
gastroenteritis	1
genetic_association_studies	1
genome-browser	1
genome-sequencer-flx	1
genotyping-errors	1
global	1
gnumap	1
greed	1
gsmapper	1
guide	1
gwas	1
haplosnper	1
haplotype	1
haskell	1
hawkeye	1
heatmap	1
hirschberg	1
hnf4alpha	1
huffman	1
hunt-szymanski	1
igraph	1
indel	1
inference	1
ingap	1
in-silico	1
iphone	1
javascript	1
jbrowse	1
junction	1
kautz-zeckendorf	1
k-means	1
laboratory	1
lasergene	1
lectures	1
links	1
local	1
lookseq	1
mailing-list	1
mapper	1
mapview	1
marth	1
mask	1
mathworks	1
matlab	1
maximum-likelihood	1
meeting	1
mendeley	1
mining	1
minisatellites	1
misassembly	1
mobyle	1
mom	1
mrfast	1
mrna	1
multiplex	1
mummer	1
mutation	1
mutations	1
mvf	1
myers	1
myexperiment	1
nature	1
ncbi	1
network	1
neural-network	1
newsarticle	1
ngsview	1
nimblegen	1
notation	1
novosnp3	1
oasis	1
order	1
oslay	1
pachter	1
pacific-biosciences	1
palindromes	1
palma	1
papers	1
parallel	1
pass	1
patman	1
perm	1
pileup	1
pindel	1
pinesap	1
piqa	1
planet	1
plant	1
plugin	1
polyfreq	1
polymerase	1
polyscan	1
pooled	1
pooling	1
population	1
prediction	1
primer	1
probability	1
probhd	1
programming	1
protocol	1
provenance	1
pruning	1
pts	1
q-gram	1
qsra	1
razers	1
real-time	1
reps	1
reputer	1
rna	1
rna-mate	1
roche	1
rolexa	1
ruby	1
salzberg	1
sam	1
samtools	1
scripting	1
scs	1
semantic	1
semantic-web	1
semi-global	1
semi-local	1
seqan	1
seqmap	1
set	1
sharcgs	1
shore	1
shortread	1
shorty	1
shrimp	1
sickle-cell	1
slider	1
sliding-window	1
smith-waterman	1
snpdetector	1
snp-discovert	1
snp-o-matic	1
snp-phage	1
snv	1
soap2	1
social	1
splice	1
splicing	1
ssaha	1
ssaha2	1
ssaha_pileup	1
ssahasnp	1
stat5a	1
string-scanning	1
subquadratic	1
subsequence	1
suffix-stree	1
survey	1
swift	1
tagdust	1
tandem-repeat-finder	1
target-region	1
textbook	1
tile	1
tileqc	1
toolkit	1
tools	1
tophat	1
toronto-2008	1
trapnell	1
trdb	1
t-reks	1
trf	1
tview	1
ucsc	1
unofficial	1
varscan	1
velvet	1
web-server	1
windowmasker	1
yh	1
yoruba	1
zoom	1

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