n00c's 454 [52 articles] Export

Recent papers added to n00c's library classified by the tag 454. You can also see everyone's 454.

	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to solexa sequencing sanger illumina genome de-novo assembly 454 by n00c on 2009-12-03 16:11:02 as along with 11 people and 2 groups orzenil GustavoLacerda sotacam gillianturgeon natstreet druvus jamselem sujaikumar kiekyon ppgardne stajich Journal picks Mycology
	Pyrosequencing Sheds Light on DNA Sequencing [My Copy] Genome research In Genome Research, Vol. 11, No. 1. (1 January 2001), pp. 3-11. by Mostafa Ronaghi posted to sequencing pyrosequencing 454 by n00c on 2009-12-03 16:04:49 as along with 8 people and 1 group seb1 dzunkova tpreeprem mariakmejia kieran101 darioacha balicea bozdagd gatech-compgenomics
	Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to sequencing pyrosequencing error-model diversity 454 by n00c on 2009-12-03 14:20:32 as along with 3 people and 1 group jgill jmeppley skembel iSEEM
	Microdroplet-based PCR enrichment for large-scale targeted sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to solexa roche illumina enrichment capture 454 by n00c on 2009-12-03 13:53:04 as along with 3 people and 2 groups chvlyl torfinnnome qayub Reunions Biblio Spectro-IAB Journal picks
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae [My Copy] Genome research In Genome Research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to vcake solexa soap illumina assembly 454 by n00c on 2009-12-03 13:32:23 as along with 14 people and 2 groups michaelbarton pachorip ThomasDOtto robsyme orzenil AaronDarling druvus dakelley Huub_odc usagi-kirin abizar acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	Large-Scale Discovery of Gene-Enriched SNPs [My Copy] The Plant Genome In The Plant Genome, Vol. 2, No. 2. (July 2009), pp. 121-133. by Michael A. Gore, Mark H. Wright, Elhan S. Ersoz, et al.Pascal Bouffard, Edward S. Szekeres, Thomas P. Jarvie, Bonnie L. Hurwitz, Apurva Narechania, Timothy T. Harkins, George S. Grills, Doreen H. Ware, Edward S. Buckler posted to snp-discovery gene-enrichment cap3 454 by n00c on 2009-12-03 13:24:25 as along with 1 person orzenil
	454 sequencing put to the test using the complex genome of barley [My Copy] BMC Genomics, Vol. 7, No. 1. (26 October 2006), 275. by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy Close, Beat Keller, Nils Stein posted to tandem-repeats sequencing pyrosequencing coverage 454 by n00c on 2009-12-02 19:25:38 as along with 8 people and 3 groups orzenil GustavoLacerda jmeppley balicea ghattem azazello cisevol tpreeprem MBLAB BergmanLab gatech-compgenomics
	High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research [My Copy] Genome Biology, Vol. 10, No. 2. (11 February 2009), R16. by Kathrin Reichwald, Chris Lauber, Indrajit Nanda, et al.Jeanette Kirschner, Nils Hartmann, Susanne Schories, Ulrike Gausmann, Stefan Taudien, Markus Schilhabel, Karol Szafranski, Gernot Glockner, Michael Schmid, Alessandro Cellerino, Manfred Schartl, Christoph Englert, Matthias Platzer posted to vntr tandem-repeats pyrosequencing longevity aging 454 by n00c on 2009-12-02 19:21:13 as along with 2 people greg gwallau
	Pyrosequencing as a method for SNP identification in the rhesus macaque (Macaca mulatta) [My Copy] BMC Genomics, Vol. 9, No. 1. (29 May 2008), 256. by Jessica Satkoski, R. S. Malhi, S. Kanthaswamy, R. Y. Tito, V. S. Malladi, D. G. Smith posted to snp-discovery snp pyrosequencing 454 by n00c on 2009-12-02 19:06:27 as along with 2 people natstreet tonia_schwartz
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to solexa sequencing review illumina helicos error-rate 454 by n00c on 2009-12-02 18:06:07 as along with 18 people and 1 group mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali stajich reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Mycology
	Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey [My Copy] BMC Genomics, Vol. 8, No. 1. (24 May 2007), 132. by Kankshita Swaminathan, Kranthi Varala, Matthew Hudson posted to variant resequencing repeat cnv 454 by n00c on 2009-12-02 17:55:33 as along with 6 people and 2 groups orzenil floatingpoint ghattem GustavoLacerda tpreeprem bozdagd BergmanLab gatech-compgenomics
	Viewing 454 Assemblies [My Copy] posted to viewing staden roche gap4 454 by n00c on 2009-12-02 01:24:34 as
	roche454ace2caf [My Copy] posted to staden roche gap4 format file caf ace 454 by n00c on 2009-12-02 01:23:42 as
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to sequencing pyrosequencing 454 by n00c on 2009-11-23 09:37:05 as along with 38 people and 5 groups rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Supplementary Information - Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] by Aaron R. Quinlan, Donald A. Stewart, Michael P. Strömberg, Gábor T. Marth posted to supplementary-information snp-discovery snp pyrosequencing pyrobayes 454 by n00c on 2009-11-23 00:07:37 as
	sff_extract [My Copy] by Jose Blanca posted to tool software sff_extract sff python flowgram 454 by n00c on 2009-11-21 21:12:11 as
	Standard Flowgram Format (SFF) [My Copy] posted to sff format flowgram file-format 454 by n00c on 2009-11-21 20:36:09 as
	Comprehensive resequence analysis of a 97 kb region of chromosome 10q11.2 containing the MSMB gene associated with prostate cancer [My Copy] Human Genetics (31 July 2009) by Meredith Yeager, Zuoming Deng, Joseph Boland, et al.Casey Matthews, Jennifer Bacior, Victor Lonsberry, Amy Hutchinson, Laura Burdett, Liqun Qi, Kevin Jacobs, Jesus Gonzalez-Bosquet, Sonja Berndt, Richard Hayes, Robert Hoover, Gilles Thomas, David Hunter, Michael Dean, Stephen Chanock posted to variant-calling target-region snp-calling resequencing mosaik 454 by n00c on 2009-11-16 23:28:24 as along with 1 person xingxu
	inGAP: an integrated next-generation genome analysis pipeline. [My Copy] Bioinformatics (Oxford, England) (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp-discovery snp sequencing pipeline ingap coverage 454 by n00c on 2009-11-02 21:10:08 as along with 4 people jasontsai natstreet heliopais druvus
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to variation solid solexa roche review mosaik illumina false-positive comparison abi 454 by n00c on 2009-10-19 16:04:09 as along with 5 people and 1 group operon jwfoley skembel djkt natstreet iSEEM
	Working with SFF Files from 454 Genome Sequencer FLX [My Copy] posted to sff matlab mathworks fastq 454 by n00c on 2009-10-03 20:02:07 as
	Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (May 2009), pp. 347-354. by Peter C. Bundock, Frances G. Eliott, Gary Ablett, et al.Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, Robert J. Henry posted to snp-discovery snp sequencing polybayes plant genome 454 by n00c on 2009-10-01 16:17:51 as along with 2 people orzenil natstreet
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to transcriptome technology solid solexa rna-seq illumina comparison abi 454 by n00c on 2009-09-29 16:17:26 as along with 19 people and 4 groups hzoltan daveGerrard daforerog feeldead debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to vntr tool tandem-repeats software pyrosequencing pipeline paired-end newbler celera cabog assembly 454 by n00c on 2009-09-28 15:22:07 as along with 17 people and 2 groups GustavoLacerda APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	Next-Generation DNA Sequencing Methods [My Copy] Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to solid solexa sequencing illumina abi 454 by n00c on 2009-09-25 17:02:13 as along with 15 people rshe heliopais daforerog stsaft natstreet druvus Vincent_Rouilly Annab floatingpoint yupu LorraineThompson giovenko aheilbut reyez guhjy
	Origin of Saxitoxin Biosynthetic Genes in Cyanobacteria [My Copy] PLoS ONE, Vol. 4, No. 6. (1 June 2009), e5758. by Ahmed Moustafa, Jeannette E. Loram, Jeremiah D. Hackett, Donald M. Anderson, F. Gerald Plumley, Debashish Bhattacharya posted to seqman newbler genome 454 by n00c on 2009-09-21 23:14:59 as along with 1 person ahmedmoustafa
	Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing [My Copy] Molecular Ecology, Vol. 17, No. 7. (April 2008), pp. 1636-1647. by J. Cristobal Vera, Christopher W. Wheat, Howard W. Fescemyer, et al.Mikko J. Frilander, Douglas L. Crawford, I. Ilkka Hansk, James H. Marden posted to seqman pyrosequencing 454 by n00c on 2009-09-21 23:13:01 as along with 5 people sujaikumar oneilsh semrich orzenil guhjy
	Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 6. (10 February 2009), pp. 1886-1891. by Qi Zhao, Otavia L. Caballero, Samuel Levy, et al.Brian J. Stevenson, Christian Iseli, Sandro J. de Souza, Pedro A. Galante, Dana Busam, Margaret A. Leversha, Kalyani Chadalavada, Yu-Hui Rogers, J. Craig Venter, Andrew J. G. Simpson, Robert L. Strausberg posted to transcriptome newbler genomics genome clc cancer 454 by n00c on 2009-09-21 21:17:12 as along with 2 people stubrown xingxu
	SNP-finding example with Ant transcript reads - Bioinformatics Core Wiki [My Copy] posted to transcriptome snp-discovery snp newbler gsmapper gigabayes 454 by n00c on 2009-09-14 16:32:08 as
	SNP discovery via 454 transcriptome sequencing [My Copy] The Plant Journal, Vol. 51, No. 5. (September 2007), pp. 910-918. by W. Brad Barbazuk, Scott J. Emrich, Hsin D. Chen, Li Li, Patrick S. Schnable posted to transcriptome snp-discovery sequencing polybayes 454 by n00c on 2009-09-13 09:20:20 as along with 5 people stubrown jlin orzenil guhjy natstreet
	PolyBayes [My Copy] by Ruslan Salakhutdinov posted to snp-calling snp pyrobayes primer presentation polybayes bayesian 454 by n00c on 2009-09-11 20:10:20 as
	Genomic Variation Discovery [My Copy] by Michael Strömberg posted to variant solexa snp-calling short-read resequencing presentation mosaik illumina gigabayes 454 by n00c on 2009-09-10 17:59:42 as
	Whole genome assembly from 454 sequencing output via modified DNA graph concept [My Copy] Computational Biology and Chemistry, Vol. 33, No. 3. (04 June 2009), pp. 224-230. by Jacek Blazewicz, Marcin Bryja, Marek Figlerowicz, et al.Piotr Gawron, Marta Kasprzak, Edward Kirton, Darren Platt, Jakub Przybytek, Aleksandra Swiercz, Lukasz Szajkowski posted to sequencing graph de-novo assembly algorithm 454 by n00c on 2009-09-04 13:12:14 as along with 5 people and 1 group GustavoLacerda stajich orzenil natstreet druvus Mycology
	Rapid whole-genome mutational profiling using next-generation sequencing technologies. [My Copy] Genome research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing pyrobayes mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to resequencing mrfast map illumina copy-number cnv 454 by n00c on 2009-09-02 16:25:14 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Rare Variants of IFIH1, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 387-389. by Sergey Nejentsev, Neil Walker, David Riches, Michael Egholm, John A. Todd posted to resequencing pool multiplexing gwas 454 by n00c on 2009-08-24 21:51:37 as along with 8 people and 2 groups liqbbi vplagnol jandot APRegier myzhang pkonings absterga jbhiatt Journal picks Marcotte_Lab
	Biohaskell » A set of tools for working with 454 sequences [My Copy] posted to tool software sff pyrosequencing library haskell biohaskell 454 by n00c on 2009-08-19 11:42:08 as
	Parallel tagged sequencing on the 454 platform [My Copy] Nature Protocols, Vol. 3, No. 2. (31 January 2008), pp. 267-278. by Matthias Meyer, Udo Stenzel, Michael Hofreiter posted to sequencing pts barcoding 454 by n00c on 2009-08-18 00:49:04 as along with 6 people heliopais jandot GeeSharpMinor maren slevy03 guhjy
	A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1609-1616. by Zia Khan, Joshua S. Bloom, Leonid Kruglyak, Mona Singh posted to 454 algorithm alignment suffix-array by n00c on 2009-08-05 17:08:46 as along with 2 people guhjy djkt
	The Genome Sequencer FLX™ System—Longer reads, more applications, straight forward bioinformatics and more complete data sets [My Copy] Journal of Biotechnology, Vol. 136, No. 1-2. (31 August 2008), pp. 3-10. by M. Droege, B. Hill posted to pyrosequencing nimblegen genome-sequencer-flx 454 by n00c on 2009-07-30 19:43:19 as along with 6 people thegoose katholt daed druvus floatingpoint GustavoLacerda
	Gene expression profiling by massively parallel sequencing. [My Copy] Genome research, Vol. 18, No. 1. (21 January 2008), pp. 172-177. by Tatiana Teixeira T. Torres, Muralidhar Metta, Birgit Ottenwälder, Christian Schlötterer posted to 454 bias gene-expression rna-seq by n00c on 2009-07-30 17:39:19 as along with 19 people oannes hzoltan manduca druvus daed floatingpoint inesdesantiago orzenil guhjy jfr dchughes stsaft echinotrix giovanni caseybrown ghattem idonaldson ohara gracio
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to software short-read rna-seq gene-expression error comparison clc 454 by n00c on 2009-07-30 17:37:35 as along with 16 people and 3 groups torfinnnome hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol natstreet druvus jbhiatt Journal picks JLab BergmanLab
	Accuracy and quality of massively parallel DNA pyrosequencing [My Copy] Genome Biology, Vol. 8, No. 7. (20 July 2007), R143. by Susan Huse, Julie Huber, Hilary Morrison, Mitchell Sogin, David Welch posted to 454 error error-model pyrosequencing by n00c on 2009-07-29 17:55:41 as along with 17 people and 3 groups nfparrish druvus jlgreen Thaverkamp orzenil mmartin floatingpoint Huub_odc gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Olaf_Ilzins bozdagd iSEEM Bioinformatics gatech-compgenomics
	The complete genome of an individual by massively parallel DNA sequencing. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted to watson tpgp snp resequencing pyrosequencing individual-human-genome genome 454 by n00c on 2009-07-28 18:47:35 as along with 23 people and 2 groups rshe jonilaserson jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting dbensasson bpb Neeperando Huub_odc guhjy parkinson's disease references microbiology_nijmegen
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to 454 pyrosequencing resequencing snp variant by n00c on 2009-07-28 18:44:46 as along with 22 people and 2 groups torfinnnome jandot jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	Comparison of 454 Sequencing Platform with Traditional Sanger Sequencing: a Case Study with de novo Sequencing of Prochlorococcus marinus NATL2a Genome [My Copy] (2006) by Feng Chen, Joseph Alessi, Edward Kirton, Vasanth Singan, Paul Richardson posted to 454 comparison error-model resequencing by n00c on 2009-07-27 23:28:30 as
	Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] Nat Meth, Vol. 5, No. 2. (13 February 2008), pp. 179-181. by Aaron R. Quinlan, Donald A. Stewart, Michael P. Stromberg, Gabor T. Marth posted to snp-discovery snp resequencing pyrobayes bayesian base-calling 454 by n00c on 2009-07-27 20:05:51 as along with 9 people and 1 group jonilaserson natstreet druvus hpaces orzenil jmeppley azazello guhjy mariakmejia gatech-compgenomics
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to varscan variant tool software snp-calling snp resequencing 454 by n00c on 2009-07-27 19:59:29 as along with 16 people and 3 groups humburg hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	A probabilistic approach for SNP discovery in high-throughput human resequencing data [My Copy] Genome Research, Vol. 19, No. 9. (15 September 2009), pp. 1542-1552. by Rose Hoberman, Joana Dias, Bing Ge, et al.Eef Harmsen, Michael Mayhew, Dominique J. Verlaan, Tony Kwan, Ken Dewar, Mathieu Blanchette, Tomi Pastinen posted to snp-discovery snp-calling snp resequencing probhd mosaik 454 by n00c on 2009-07-27 19:50:53 as along with 7 people druvus sameersoi megraw guhjy fenghezi natstreet djkt
	Quality scores and SNP detection in sequencing-by-synthesis systems [My Copy] Genome Research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to tool swap454 software snp-calling snp resequencing quality nqs broad-institute 454 by n00c on 2009-07-20 18:18:21 as along with 13 people humburg jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson bpb Neeperando sharpton GustavoLacerda

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short-read	99
algorithm	94
software	87
tool	66
genome	64
sequencing	61
snp	59
454	52
map	51
resequencing	51
assembly	49
alignment	45
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solexa	35
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rna-seq	29
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tandem-repeats	28
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data-structure	20
transcriptome	19
de-novo	16
pyrosequencing	16
burrows-wheeler	16
assembler	16
tpgp	15
bayesian	15
variant	14
string-matching	14
vntr	14
pipeline	13
individual-human-genome	12
error-model	12
visualization	12
web-service	12
comparison	12
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indexing	11
repeats	11
abi	10
error-bound	10
solid	10
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lcs	9
cnv	9
bioinformatics	9
microarray	9
base-calling	9
suffix-array	9
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coverage	8
suffix-tree	8
enrichment	8
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polybayes	8
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capture	7
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sv	6
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web	5
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seqman	5
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clc	4
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enhanced-suffix-array	4
newbler	4
text	4
color-space	4
soap	4
book	4
bu	4
roche	4
data	4
pyrobayes	4
mutation	4
3rd-generation	4
machine-learning	4
structure	4
venter	4
compression	4
polymorphism	4
pool-design	4
pool	4
sff	4
haplotype	4
copy-number	4
bacterial	4
aging	3
research	3
annotation	3
space	3
soapsnp	3
de-brujin	3
ssahasnp	3
gwas	3
format	3
exome	3
celera	3
landau	3
centenarian	3
lbi	3
r	3
differential-gene-expression	3
vishkin	3
workflow	3
bwa	3
helicos	3
nqs	3
human	3
ace	3
bias	3
browser	3
statistics	3
open-source	3
nd	2
segemehl	2
rmap	2
tutorial	2
snp-discovert	2
tfs	2
haskell	2
virus	2
combinatorics	2
validation	2
hapmap	2
biomoby	2
technology	2
navarro	2
huref	2
asian	2
microbial_genetics	2
est	2
linux	2
aml	2
trf	2
consensus	2
abyss	2
staden	2
gene-expression	2
human-genome	2
venn-diagram	2
alta-cyclic	2
ssake	2
registry	2
organization	2
gap4	2
erange	2
single-molecule	2
parallel	2
vcake	2
low-complexity	2
diagnostics	2
nussinov	2
rolexa	2
cplusplus	2
allpaths	2
mouse	2
list	2
lecroq	2
bloom-filter	2
2nd-generation	2
bioconductor	2
shore	2
methodology	2
pdf	2
bumc	2
gpu	2
multiple-alignment	2
leukemia	2
eulerian	2
file	2
np-complete	2
seed	2
arachne	2
novosnp	2
nakatsu	2
gff	2
ssaha2	2
user-group	2
gui	2
flowgram	2
genetics	2
structural-variation	2
liver	2
sudoku	2
durbin	2
report	2
graph-theory	2
watson	2
dbsnp	2
frequency	2
cap3	2
apple	2
dust	2
phred	2
maximum-likelihood	1
pacific-biosciences	1
textbook	1
reconciliation	1
snv	1
meiosis	1
pass	1
planet	1
survey	1
gastroenteritis	1
pooling	1
1000-genomes	1
soap2	1
reputer	1
pairwise	1
alleles	1
splice	1
pinesap	1
contig	1
extended-suffix-array	1
tools	1
mapper	1
arabidopsis	1
allpaths2	1
igraph	1
error-rate	1
gene-enrichment	1
faq	1
pileup	1
genome-browser	1
recombination	1
gr-aligner	1
maqgene	1
eagleview	1
shortread	1
misassembly	1
blast	1
poster	1
broad-institute	1
simulation	1
qsra	1
kautz-zeckendorf	1
breakdancer	1
sage	1
pooled	1
fastq	1
meeting	1
hash	1
patman	1
multiplex	1
tagdust	1
imputation	1
asssembly	1
samtools	1
casava	1
supplementary-information	1
personal-genomics	1
gamma-distribution	1
survival	1
bank	1
ruby	1
junction	1
bibliography	1
social	1
analysis	1
conference	1
maqview	1
rna-mate	1
bound	1
shotgun	1
provenance	1
pet	1
mask	1
tophat	1
tileqc	1
snplogic	1
shoremap	1
greed	1
mrna	1
genome-sequencer-flx	1
str	1
tandem-repeat-finder	1
transcription	1
mapview	1
ssaha_pileup	1
string-scanning	1
boyer-moore	1
matlab	1
errors	1
exon-capture	1
array	1
seqan	1
website	1
semantic-web	1
stat5a	1
primer	1
alphabet	1
snp-o-matic	1
local	1
promoter	1
subsequence	1
rna	1
exon	1
k-means	1
gigassembler	1
socs	1
disorder	1
mom	1
datamining	1
inference	1
ncbi	1
exonerate	1
asymptotic	1
bachmann-landau	1
cluster	1
windowmasker	1
hawkeye	1
genetic_association_studies	1
forage	1
pindel	1
firefox	1
order	1
minisatellites	1
string	1
mendeley	1
ebi	1
genotype	1
gap	1
palindromes	1
difference	1
varscan	1
novosnp3	1
nimblegen	1
qpalma	1
indel	1
yh	1
swap454	1
plugin	1
f-seq	1
framework	1
web-server	1
tview	1
laboratory	1
subquadratic	1
mrfast	1
shrimp	1
ngsview	1
mitochondria	1
ucsc	1
target-region	1
arachne2	1
polyfreq	1
pemer	1
hirschberg	1
factor-oracle	1
toolkit	1
pruning	1
euler	1
q-gram	1
wiki	1
piqa	1
unofficial	1
dynamic-programming	1
tile	1
sff_extract	1
toronto-2008	1
semantic	1
pachter	1
smith-waterman	1
population	1
myexperiment	1
heatmap	1
bwt-sw	1
findpeaks	1
repeat	1
model	1
hunt-szymanski	1
mvf	1
iphone	1
bustard	1
transcriptomics	1
sam	1
scaffold	1
trbase	1
semi-global	1
gnumap	1
path	1
oslay	1
bfast	1
yoruba	1
galign	1
set	1
diversity	1
translocation	1
links	1
viewing	1
cloudburst	1
cabog	1
scaffolding	1
programming	1
jbrowse	1
fm-kz	1
biomart	1
file-format	1
mutations	1
blat	1
sanger	1
connected-component	1
phusion	1
protocol	1
breakpoint	1
barcoding	1
breakpoints	1
gsmapper	1
bwt	1
element	1
computer-science	1
function	1
false-positive	1
lasergene	1
razers	1
quantisnp	1
avid	1
mailing-list	1
lectures	1
lookseq	1
prediction	1
eland	1
swift	1
velvet	1
forum	1
in-silico	1
guide	1
finite-automaton	1
suffix-stree	1
papers	1
slider	1
plant	1
reps	1
cdna	1
consed	1
semi-local	1
cancer	1
hi	1
snp-phage	1
caf	1
genotyping-errors	1
color	1
probhd	1
scripting	1
myers	1
expression	1
neural-network	1
ssaha	1
hnf4alpha	1
newsarticle	1
agilent	1
pts	1
mobyle	1
shorty	1
bayescall	1
mining	1
hapcut	1
polymerase	1
python	1
notation	1
salzberg	1
cnv-seq	1
oasis	1
real-time	1
network	1
mummer	1
palma	1
sickle-cell	1
dibase	1
t-reks	1
zoom	1
minisatellite	1
perm	1
trap	1

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