n00c's resequencing [52 articles] Export

Recent papers added to n00c's library classified by the tag resequencing. You can also see everyone's resequencing.

	Population Genetic Inference From Resequencing Data [My Copy] Genetics In Genetics, Vol. 181, No. 1. (1 January 2009), pp. 187-197. by Rong Jiang, Simon Tavare, Paul Marjoram posted to variation solexa snp resequencing model 454 by n00c on 2009-12-09 20:11:48 as along with 12 people and 3 groups MarkFiers scmelton taylor73 maren jbsaltz dpollard katholt natstreet djkt abizar druvus stajich RockmanLab iSEEM Mycology
	Next generation sequence analysis for mitochondrial disorders. [My Copy] Genome medicine, Vol. 1, No. 10. (23 October 2009) by Valeria Vasta, Sarah B. Ng, Emily H. Turner, Jay Shendure, Si Houn H. Hahn posted to variant snp resequencing mitochondria disease database by n00c on 2009-12-04 18:03:13 as along with 1 person pst
	Exome sequencing identifies the cause of a mendelian disorder [My Copy] Nature Genetics In Nat Genet, Vol. advance online publication (13 November 2009) by Sarah B. Ng, Kati J. Buckingham, Choli Lee, et al.Abigail W. Bigham, Holly K. Tabor, Karin M. Dent, Chad D. Huff, Paul T. Shannon, Ethylin W. Jabs, Deborah A. Nickerson, Jay Shendure, Michael J. Bamshad posted to solexa resequencing illumina exome enrichment disease capture agilent by n00c on 2009-12-04 17:51:46 as along with 6 people cajunsushi pst seb1 daforerog Peiyong psique
	Genetic diagnosis by whole exome capture and massively parallel DNA sequencing [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 19096-19101. by Murim Choi, Ute I. Scholl, Weizhen Ji, et al.Tiewen Liu, Irina R. Tikhonova, Paul Zumbo, Ahmet Nayir, AyÈin BakkaloÄlu, Seza Ãzen, Sami Sanjad, Carol Nelson-Williams, Anita Farhi, Shrikant Mane, Richard P. Lifton posted to resequencing enrichment diagnostics capture by n00c on 2009-12-04 17:35:33 as along with 6 people daforerog liqbbi pst Peiyong chvlyl giovanni
	Massively parallel exon capture and library-free resequencing across 16 genomes [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 5. (06 April 2009), pp. 315-316. by Emily H. Turner, Choli Lee, Sarah B. Ng, Deborah A. Nickerson, Jay Shendure posted to resequencing exon-capture enrichment capture by n00c on 2009-12-03 13:54:20 as along with 7 people and 1 group xingxu torfinnnome jandot fenghezi guhjy jdbowes sleepingcell Journal picks
	Genome resequencing and genetic variation [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 1. (01 January 2008), pp. 65-66. by Michael Stratton posted to variation review resequencing genome enrichment by n00c on 2009-12-03 13:43:15 as along with 6 people and 1 group MarkFiers orzenil Ayest natstreet druvus psique parkinson's disease references
	Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey [My Copy] BMC Genomics, Vol. 8, No. 1. (24 May 2007), 132. by Kankshita Swaminathan, Kranthi Varala, Matthew Hudson posted to variant resequencing repeat cnv 454 by n00c on 2009-12-02 17:55:33 as along with 6 people and 2 groups orzenil floatingpoint ghattem GustavoLacerda tpreeprem bozdagd BergmanLab gatech-compgenomics
	Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (10 July 2009), e1000432. by Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein posted to sv resequencing personal-genomics by n00c on 2009-12-01 13:42:56 as along with 7 people tharris operon nuin natstreet rdiaz dakelley guhjy
	Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing [My Copy] PLoS ONE In PLoS ONE, Vol. 4, No. 8. (17 August 2009), e6659. by Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, et al.Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis posted to variation solexa snp-calling rolexa resequencing illumina genome enrichment capture by n00c on 2009-11-30 21:05:35 as along with 2 people torfinnnome thegoose
	Nature Protocols: Genome resequencing and identification of variations by Illumina Genome Analyzer Reads [My Copy] by Jun Wang, Ruiqiang Li, Yingrui Li, Xiaodong Fang, Binxiao Feng, Jun Li posted to variant-calling variant solexa soapsnp snp-discovery snp resequencing illumina by n00c on 2009-11-20 20:57:20 as
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PloS one In PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to tool software resequencing mapping mapper genome bfast alignment algorithm by n00c on 2009-11-18 22:33:20 as along with 9 people darian MarkFiers gdb oannes friendpine zwang druvus torfinnnome idonaldson
	Comprehensive resequence analysis of a 97 kb region of chromosome 10q11.2 containing the MSMB gene associated with prostate cancer [My Copy] Human Genetics (31 July 2009) by Meredith Yeager, Zuoming Deng, Joseph Boland, et al.Casey Matthews, Jennifer Bacior, Victor Lonsberry, Amy Hutchinson, Laura Burdett, Liqun Qi, Kevin Jacobs, Jesus Gonzalez-Bosquet, Sonja Berndt, Richard Hayes, Robert Hoover, Gilles Thomas, David Hunter, Michael Dean, Stephen Chanock posted to variant-calling target-region snp-calling resequencing mosaik 454 by n00c on 2009-11-16 23:28:24 as along with 1 person xingxu
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing review resequencing mapping de-bruijn assembly alignment by n00c on 2009-10-30 19:15:41 as along with 16 people and 1 group claire_jubin idoerg ajsferreira pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor venancio desany Orengo Group Journal Picks
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to variant sv resequencing by n00c on 2009-10-30 19:03:36 as along with 17 people and 2 groups seb1 pst owenlancaster robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong gdv desany qayub Orengo Group Journal Picks Journal picks
	Genotyping of James Watson from Low-coverage Sequencing Data [My Copy] by Sanjiv Dinakar, Yözen Hernández posted to watson snp-discovery snp-calling snp resequencing presentation genotyping coverage bayesian by n00c on 2009-10-05 16:44:36 as
	Combinatorics and next-generation sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 826-827. by Nick Patterson, Stacey Gabriel posted to sudoku resequencing pool-design pool multiplexing combinatorics by n00c on 2009-10-01 16:10:29 as along with 8 people and 1 group darian ethanmj ptrobajo orzenil torfinnnome inesdesantiago qayub rmk Journal picks
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to resequencing copy-number cnv-seq cnv by n00c on 2009-09-29 16:33:06 as along with 19 people and 1 group humburg hzoltan biovils stubrown cthachuk GustavoLacerda darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan sleepingcell neils magusina Bioinformatics
	Whole-genome re-sequencing. [My Copy] Current opinion in genetics & development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 545-552. by David R. Bentley posted to viewer review resequencing pipeline gap by n00c on 2009-09-29 16:20:29 as along with 14 people and 3 groups pristanna rshe druvus anuskap mmartin jameswasmuth usagi-kirin jmeppley frohike indigoviolet dchughes azazello jo_davies kmdaily EisenLab G4ID Genetics-of-Gambling
	Accurate whole human genome sequencing using reversible terminator chemistry [My Copy] Nature In Nature, Vol. 456, No. 7218. (06 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. J. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. D. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee L. Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana C. Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie vandeVondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted to yoruba tpgp solexa resequencing maq individual-human-genome illumina genome eland by n00c on 2009-09-28 15:30:03 as along with 30 people and 1 group jmanning2k hzoltan rshe pst gbenson giovenko clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt SIMR bioinformatics
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to variant snp-discovery sequencing resequencing hapmap genetics exome disorder capture by n00c on 2009-09-28 15:20:55 as along with 23 people and 1 group seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	Impact of the next generation DNA sequencers. [My Copy] International journal of clinical and experimental medicine, Vol. 2, No. 2. (2009), pp. 193-202. by Kikuya Kato posted to sequencing review resequencing dna by n00c on 2009-09-26 01:50:21 as along with 4 people and 1 group dswan jandot sitalange darian Journal picks
	Next-Generation Sequencing Methods: Impact of Sequencing Accuracy on SNP Discovery [My Copy] Single Nucleotide Polymorphisms (2009), pp. 95-111. by Eugene Y. Chan posted to solexa snp-discovery snp resequencing repeats methods illumina helicos by n00c on 2009-09-26 01:49:02 as
	Model-Based Quality Assessment and Base-Calling For Second-Generation Sequencing [My Copy] by Rafael Irizarry posted to solexa snp-calling resequencing quality presentation illumina genotyping error-model error base-calling by n00c on 2009-09-18 16:42:02 as
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M POP,, S SALZBERG, posted to resequencing bioinformatics by n00c on 2009-09-18 00:01:17 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	novoSNP3: variant detection and sequence annotation in resequencing projects. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 396 (2007), pp. 331-344. by P. D. Rijk, J. Del-Favero posted to tool software snp-discovery snp resequencing novosnp3 novosnp by n00c on 2009-09-17 19:56:56 as along with 1 person csrocha
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to visualization resequencing f-seq binding by n00c on 2009-09-13 07:39:00 as along with 18 people and 2 groups hzoltan darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	Quality and completeness of SNP databases [My Copy] Nature Genetics, Vol. 33, No. 4. (24 March 2003), pp. 457-458. by David E. Reich, Stacey B. Gabriel, David Altshuler posted to snp resequencing database by n00c on 2009-09-12 18:32:13 as along with 2 people jsatkosk farhat
	Genomic Variation Discovery [My Copy] by Michael Strömberg posted to variant solexa snp-calling short-read resequencing presentation mosaik illumina gigabayes 454 by n00c on 2009-09-10 17:59:42 as
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to tool tagdust software resequencing low-complexity dust by n00c on 2009-09-09 17:56:03 as along with 22 people and 1 group humburg darian orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam torfinnnome walshtp heliopais jandot rschulz druvus Journal picks
	Updates to the RMAP short-read mapping software [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2841-2842. by Andrew D. Smith, Wen-Yu Chung, Emily Hodges, et al.Jude Kendall, Greg Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang posted to tool solexa software short-read rmap resequencing mapping illumina by n00c on 2009-09-08 23:08:52 as along with 8 people and 1 group seb1 darian natstreet djkt rtogawa idonaldson heliopais druvus Journal picks
	Rapid whole-genome mutational profiling using next-generation sequencing technologies [My Copy] Genome research In Genome Research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing pyrobayes mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted to resequencing coverage cnv by n00c on 2009-09-02 21:12:00 as along with 7 people woodson8 scmelton torfinnnome dakelley rdiaz jbhiatt pkonings
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to resequencing mrfast mapping illumina copy-number cnv 454 by n00c on 2009-09-02 16:25:14 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Rare Variants of IFIH1, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes [My Copy] Science In Science, Vol. 324, No. 5925. (17 April 2009), pp. 387-389. by Sergey Nejentsev, Neil Walker, David Riches, Michael Egholm, John A. Todd posted to resequencing pool multiplexing gwas 454 by n00c on 2009-08-24 21:51:37 as along with 9 people and 2 groups humburg liqbbi vplagnol jandot APRegier myzhang pkonings absterga jbhiatt Journal picks Marcotte_Lab
	PineSAP--sequence alignment and SNP identification pipeline [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2609-2610. by Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale posted to software snp-calling snp resequencing pipeline pinesap machine-learning alignment by n00c on 2009-08-17 01:57:22 as along with 7 people jasontsai jsatkosk daforerog djkt operon nuin druvus
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualization viewer software short-read sequencing resequencing lookseq by n00c on 2009-08-14 21:47:57 as along with 28 people and 2 groups humburg hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	High-throughput genotyping by whole-genome resequencing. [My Copy] Genome research, Vol. 19, No. 6. (6 June 2009), pp. 1068-1076. by Xuehui Huang, Qi Feng, Qian Qian, et al.Qiang Zhao, Lu Wang, Ahong Wang, Jianping Guan, Danlin Fan, Qijun Weng, Tao Huang, Guojun Dong, Tao Sang, Bin Han posted to genotyping resequencing snp snp-calling by n00c on 2009-08-07 02:36:21 as along with 9 people APRegier jandot reyez sandfire djkt natstreet jbhiatt GeeSharpMinor langmead
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted to variant tpgp solid snp-calling snp resequencing abi by n00c on 2009-07-29 18:04:49 as along with 17 people hzoltan gbenson adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi APRegier fenghezi jmanning2k xingxu pkonings jandot natstreet
	The complete genome of an individual by massively parallel DNA sequencing [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted to watson tpgp snp resequencing pyrosequencing individual-human-genome genome atlas-snp 454 by n00c on 2009-07-28 18:47:35 as along with 23 people and 2 groups rshe jonilaserson jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting dbensasson bpb Neeperando Huub_odc guhjy parkinson's disease references microbiology_nijmegen
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science In Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to 454 pyrosequencing resequencing snp variant by n00c on 2009-07-28 18:44:46 as along with 22 people and 2 groups torfinnnome jandot jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	Comparison of 454 Sequencing Platform with Traditional Sanger Sequencing: a Case Study with de novo Sequencing of Prochlorococcus marinus NATL2a Genome [My Copy] (2006) by Feng Chen, Joseph Alessi, Edward Kirton, Vasanth Singan, Paul Richardson posted to 454 comparison error-model resequencing by n00c on 2009-07-27 23:28:30 as
	Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] Nat Meth, Vol. 5, No. 2. (13 February 2008), pp. 179-181. by Aaron R. Quinlan, Donald A. Stewart, Michael P. Stromberg, Gabor T. Marth posted to snp-discovery snp resequencing pyrobayes bayesian base-calling 454 by n00c on 2009-07-27 20:05:51 as along with 9 people and 1 group jonilaserson natstreet druvus hpaces orzenil jmeppley azazello guhjy mariakmejia gatech-compgenomics
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to varscan variant tool software snp-calling snp resequencing 454 by n00c on 2009-07-27 19:59:29 as along with 16 people and 3 groups humburg hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	A probabilistic approach for SNP discovery in high-throughput human resequencing data [My Copy] Genome Research In Genome Research, Vol. 19, No. 9. (15 September 2009), pp. 1542-1552. by Rose Hoberman, Joana Dias, Bing Ge, et al.Eef Harmsen, Michael Mayhew, Dominique J. Verlaan, Tony Kwan, Ken Dewar, Mathieu Blanchette, Tomi Pastinen posted to snp-discovery snp-calling snp resequencing probhd mosaik 454 by n00c on 2009-07-27 19:50:53 as along with 8 people orzenil druvus sameersoi megraw guhjy fenghezi natstreet djkt
	Quality scores and SNP detection in sequencing-by-synthesis systems [My Copy] Genome Research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to tool swap454 software snp-calling snp resequencing quality nqs broad-institute 454 by n00c on 2009-07-20 18:18:21 as along with 13 people humburg jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson bpb Neeperando sharpton GustavoLacerda
	PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data [My Copy] Genome Research, Vol. 17, No. 5. (May 2007), pp. 659-666. by Ken Chen, Michael D. Mclellan, Li Ding, et al.Michael C. Wendl, Yumi Kasai, Richard K. Wilson, Elaine R. Mardis posted to indel polyscan resequencing snp software by n00c on 2009-07-07 06:19:57 as along with 4 people natstreet druvus guhjy ohara
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to soapsnp snp-calling snp short-read resequencing by n00c on 2009-07-07 06:09:12 as along with 20 people claire_jubin humburg torfinnnome hzoltan seb1 maren adijr greg jandot guhjy jonilaserson druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	Overlapping pools for high-throughput targeted resequencing [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1254-1261. by Snehit Prabhu, Itsik Pe'er posted to short-read resequencing pool-design pool multiplexing gamma-distribution error-model by n00c on 2009-07-06 23:39:41 as along with 14 people and 1 group humburg hzoltan jandot guhjy pkonings jcbarret orzenil natstreet druvus dandaman xingxu sameersoi djkt jdbowes Journal picks
	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. i32-40. by Iman Hajirasouliha, Fereydoun Hormozdiari, S. Cenk Sahinalp, Inanc Birol posted to short-read resequencing pool-design pool multiplexing by n00c on 2009-07-06 23:11:17 as along with 7 people manduca orzenil druvus babakap kittipat reyez Neeperando
	Mosaik - The MarthLab [My Copy] posted to tool solexa software resequencing mosaik mapping illumina assembler alignment 454 by n00c on 2009-06-20 05:41:40 as

Note: You may cite this page as: http://www.citeulike.org/user/n00c/tag/resequencing

Result page: 1 2 Next

algorithm	111
software	107
short-read	106
sequencing	89
tool	87
genome	81
454	73
snp	68
assembly	67
mapping	61
resequencing	52
alignment	48
illumina	47
solexa	47
snp-discovery	39
review	38
tandem-repeats	35
rna-seq	32
snp-calling	30
pyrosequencing	30
transcriptome	25
sequence	25
data-structure	22
burrows-wheeler	21
de-novo	20
repeats	20
assembler	19
vntr	18
error-model	17
visualization	17
comparison	16
sv	15
pipeline	15
variant	15
viewer	15
tpgp	15
bayesian	15
string-matching	14
variation	13
individual-human-genome	13
paired-end	12
mosaik	12
web-service	12
cnv	11
abi	11
solid	11
indexing	11
suffix-array	11
enrichment	10
spaced-seeds	10
error-bound	10
coverage	10
technology	9
suffix-tree	9
quality	9
microarray	9
capture	9
base-calling	9
bioinformatics	9
lcs	9
homology	9
database	9
biology	8
haplotype	8
graph	8
genotyping	8
maq	8
compression	8
polybayes	8
de-bruijn	7
bwt	7
error	7
association	7
bacterial	7
presentation	7
flowgram	6
error-rate	6
disease	6
genomics	6
library	6
gigabayes	6
fm-index	6
roche	6
dna	6
copy-number	6
tandem	6
longevity	5
seqman	5
model	5
multiplexing	5
bowtie	5
data	5
mapper	5
web	5
newbler	5
soap	5
methods	5
pyrobayes	5
jennifer-beane	5
detection	5
cancer	5
book	5
suffix	5
3rd-generation	5
mutation	5
tree	5
li	5
text	4
machine-learning	4
human-genome	4
enhanced-suffix-array	4
shotgun	4
clc	4
venter	4
variant-calling	4
color-space	4
haplotyping	4
sff	4
cloud-computing	4
exome	4
polymorphism	4
finishing	4
ace	4
bu	4
pool	4
pool-design	4
helicos	4
soapsnp	4
browser	4
single-molecule	4
euler	4
bias	3
function	3
parallel	3
gene-expression	3
clustering	3
aging	3
landau	3
nqs	3
lbi	3
r	3
scaffold	3
gap4	3
vishkin	3
gwas	3
simulation	3
celera	3
annotation	3
2nd-generation	3
format	3
workflow	3
bwa	3
human	3
space	3
metagenomics	3
centenarian	3
sanger	3
statistics	3
open-source	3
differential-gene-expression	3
ssahasnp	3
seed	3
research	3
arachne	2
multiple-alignment	2
leukemia	2
sage	2
sudoku	2
phred	2
organization	2
durbin	2
mitochondria	2
combinatorics	2
subsequence	2
tfs	2
bumc	2
genetics	2
user-group	2
real-time	2
eulerian	2
nakatsu	2
q-gram	2
validation	2
sam	2
low-complexity	2
str	2
report	2
mouse	2
trf	2
novosnp	2
watson	2
rolexa	2
cap3	2
methodology	2
gui	2
pooling	2
nd	2
indel	2
dbsnp	2
file	2
list	2
frequency	2
hapmap	2
allpaths	2
np-complete	2
cplusplus	2
graph-theory	2
gff	2
dupfinisher	2
pacific-biosciences	2
maximum-likelihood	2
lecroq	2
vcake	2
biomoby	2
dust	2
liver	2
diagnostics	2
huref	2
registry	2
asian	2
tutorial	2
repeatgluer	2
homopolymer	2
razers	2
virus	2
segemehl	2
aml	2
chip-seq	2
consensus	2
venn-diagram	2
alta-cyclic	2
rmap	2
erange	2
gpu	2
pdf	2
ssake	2
staden	2
nussinov	2
linux	2
microbial_genetics	2
shore	2
est	2
navarro	2
haskell	2
bloom-filter	2
bioconductor	2
ssaha2	2
abyss	2
apple	2
scaffolding	2
allpaths2	1
igraph	1
gene-enrichment	1
hardness	1
faq	1
pileup	1
genome-browser	1
recombination	1
gr-aligner	1
maqgene	1
standard	1
eagleview	1
transcript	1
shortread	1
java	1
misassembly	1
blast	1
poster	1
broad-institute	1
beadarray	1
qsra	1
kautz-zeckendorf	1
breakdancer	1
pooled	1
fastq	1
meeting	1
hash	1
patman	1
multiplex	1
permutation	1
website	1
imputation	1
asssembly	1
samtools	1
casava	1
supplementary-information	1
personal-genomics	1
gamma-distribution	1
survival	1
rearrangement	1
bank	1
ruby	1
junction	1
bibliography	1
social	1
analysis	1
reas	1
conference	1
msa	1
maqview	1
rna-mate	1
bound	1
hpc	1
provenance	1
atlas-snp	1
pet	1
mask	1
tophat	1
tileqc	1
snplogic	1
shoremap	1
ab-initio	1
greed	1
mrna	1
tandem-repeat-finder	1
transcription	1
mapview	1
ssaha_pileup	1
string-scanning	1
boyer-moore	1
matlab	1
errors	1
exon-capture	1
mumrescuelite	1
array	1
dnptrapper	1
seqan	1
rap	1
promoter	1
exon	1
k-means	1
compressed-suffix-array	1
socs	1
hmm	1
ncbi	1
carnivore	1
asymptotic	1
archive	1
panda	1
bachmann-landau	1
cluster	1
windowmasker	1
genetic_association_studies	1
allele	1
firefox	1
minisatellites	1
mendeley	1
ebi	1
genotype	1
difference	1
varscan	1
novosnp3	1
tagdust	1
nimblegen	1
semantic-web	1
stat5a	1
repeatmodeler	1
primer	1
alphabet	1
snp-o-matic	1
local	1
rna	1
gigassembler	1
tigera	1
insulin	1
disorder	1
mom	1
datamining	1
inference	1
exonerate	1
hcdiff	1
classification	1
hawkeye	1
repeatfinder	1
forage	1
pindel	1
order	1
editor	1
string	1
flx	1
gap	1
palindromes	1
haplobrowser	1
qpalma	1
yh	1
swap454	1
plugin	1
autofinish	1
f-seq	1
framework	1
gs-20	1
web-server	1
tview	1
variants	1
laboratory	1
microrazers	1
subquadratic	1
mrfast	1
shrimp	1
pedigree	1
ngsview	1
ucsc	1
target-region	1
arachne2	1
polyfreq	1
pemer	1
hirschberg	1
factor-oracle	1
toolkit	1
pruning	1
wiki	1
piqa	1
unofficial	1
drosophila	1
ungapped	1
dynamic-programming	1
tile	1
sff_extract	1
toronto-2008	1
semantic	1
pachter	1
smith-waterman	1
population	1
storage	1
myexperiment	1
heatmap	1
bwt-sw	1
genome-project	1
findpeaks	1
repeat	1
hunt-szymanski	1
mvf	1
iphone	1
bustard	1
transcriptomics	1
trbase	1
semi-global	1
gnumap	1
path	1
oslay	1
bfast	1
euler-sr	1
yoruba	1
galign	1
set	1
diversity	1
translocation	1
links	1
viewing	1
cloudburst	1
reads	1
cabog	1
programming	1
jbrowse	1
mutation-rate	1
fm-kz	1
sensitivity	1
biomart	1
file-format	1
mutations	1
blat	1
gapped-alignment	1
connected-component	1
seqmonk	1
phusion	1
protocol	1
breakpoint	1
mreps	1
piler	1
mechanism	1
barcoding	1
breakpoints	1
gsmapper	1
element	1
transposable-emenets	1
computer-science	1
false-positive	1
lasergene	1
quantisnp	1
avid	1
somatic-mutation	1
sircah	1
mailing-list	1
complexity	1
lectures	1
lookseq	1
prediction	1
eland	1
swift	1
pyro-align	1
velvet	1
forum	1
in-silico	1
guide	1
finite-automaton	1
suffix-stree	1
papers	1
slider	1
plant	1

n00c's resequencing [52 articles] Export

n00c's tags