n00c's review [38 articles] Export

Recent papers added to n00c's library classified by the tag review. You can also see everyone's review.

	The sequencing shakeup [My Copy] Nature Biotechnology, Vol. 26, No. 10. (01 October 2008), pp. 1109-1112. by Amy Coombs posted to sequencing review by n00c on 2009-12-16 17:27:29 as along with 5 people druvus psique alexknight reyez GeeSharpMinor
	Pyrosequencing: History, biochemistry and future [My Copy] Clinica Chimica Acta, Vol. 363, No. 1-2. (January 2006), pp. 83-94. by A AHMADIAN,, M EHN,, S HOBER, posted to technology sequencing review pyrosequencing 454 by n00c on 2009-12-15 17:06:12 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Next-Generation Sequencing: The Race Is On [My Copy] Cell, Vol. 132, No. 5. (07 March 2008), pp. 721-723. by A VONBUBNOFF, posted to snp sequencing review genotyping by n00c on 2009-12-15 17:02:17 as along with 4 people giovenko dchughes stsaft guhjy
	Cancer genome sequencing: a review [My Copy] Hum. Mol. Genet., Vol. 18, No. R2. (15 October 2009), pp. R163-168. by Elaine R. Mardis, Richard K. Wilson posted to sv sequencing review genome cancer by n00c on 2009-12-11 19:39:59 as along with 3 people dakelley desany jmanning2k
	The challenges of sequencing by synthesis [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (06 November 2009), pp. 1013-1023. by Carl W. Fuller, Lyle R. Middendorf, Steven A. Benner, et al.George M. Church, Timothy Harris, Xiaohua Huang, Stevan B. Jovanovich, John R. Nelson, Jeffery A. Schloss, David C. Schwartz, Dmitri V. Vezenov posted to technology sequencing review by n00c on 2009-12-09 16:00:33 as along with 7 people alexknight viren4388 heliopais JonD brianb chvlyl seb1
	Generations of sequencing technologies [My Copy] Genomics, Vol. 93, No. 2. (21 February 2009), pp. 105-111. by E PETTERSSON,, J LUNDEBERG,, A AHMADIAN, posted to technology sequencing review by n00c on 2009-12-09 15:49:40 as along with 7 people guhjy Ayest behindtherabbit daed ImranRaoufMalik druvus jdbowes
	Next-generation sequencing: applications beyond genomes. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 5. (October 2008), pp. 1091-1096. by Samuel Marguerat, Brian T. Wilhelm, Jürg Bähler posted to transcriptome sequencing review chip-seq by n00c on 2009-12-09 15:40:41 as along with 6 people druvus hzoltan cbouyio kiekyon guhjy Pascalichouchou
	Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes. [My Copy] Genes & development In Genes & Development, Vol. 23, No. 12. (15 June 2009), pp. 1379-1386. by Benjamin J. Blencowe, Sidrah Ahmad, Leo J. Lee posted to transcriptome rna-seq review by n00c on 2009-12-08 12:41:39 as along with 6 people and 1 group cthachuk heliopais woodson8 guhjy fenghezi huali SIMR bioinformatics
	Applications of New Sequencing Technologies for Transcriptome Analysis [My Copy] Annual Review of Genomics and Human Genetics, Vol. 10, No. 1. (2009), pp. 135-151. by Olena Morozova, Martin Hirst, Marco A. Marra posted to transcriptome sage rna-seq review by n00c on 2009-12-08 12:37:06 as along with 5 people MarkFiers cthachuk heliopais usagi-kirin scmelton
	Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine [My Copy] Vol. 85, No. 2. (14 August 2009), pp. 142-154. by Tracy Tucker, Marco Marra, Jan M. Friedman posted to sequencing review by n00c on 2009-12-03 16:07:54 as along with 2 people chriscole daforerog
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to software rna-seq review pipeline comparison chip-seq by n00c on 2009-12-03 15:39:10 as along with 27 people and 2 groups humburg fenghezi ongenetics urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Short-Read Sequencing Technologies for Transcriptional Analyses [My Copy] Annual Review of Plant Biology, Vol. 60, No. 1. (9 January 2009), pp. 305-333. by Stacey A. Simon, Jixian Zhai, Raja S. Nandety, et al.Kevin P. McCormick, Jia Zeng, Diego Mejia, Blake C. Meyers posted to transcriptome short-read review by n00c on 2009-12-03 14:10:30 as along with 7 people darian giovenko heliopais manduca GeeSharpMinor orzenil abizar
	Genome sequence assembly: algorithms and issues [My Copy] Computer In Computer, Vol. 35, No. 7. (07 August 2002), pp. 47-54. by M. Pop, S. L. Salzberg, M. Shumway posted to review genome assembly algorithm by n00c on 2009-12-03 14:03:55 as along with 1 person Neeperando
	A case study in genome-level fragment assembly [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 16, No. 6. (1 June 2000), pp. 494-500. by Ting Chen, Steven S. Skiena posted to software review genome comparison assembly assembler by n00c on 2009-12-03 14:02:57 as along with 2 people jbhiatt neveaire
	Applications of next-generation sequencing technologies in functional genomics [My Copy] Genomics, Vol. 92, No. 5. (11 November 2008), pp. 255-264. by O MOROZOVA,, M MARRA, posted to sequencing review by n00c on 2009-12-03 13:51:45 as along with 18 people and 2 groups hzoltan heliopais viren4388 fishtank jandot lusk natstreet druvus floatingpoint usagi-kirin malcook abizar reyez dchughes xingxu giovenko GeeSharpMinor guhjy Journal picks SIMR bioinformatics
	Genome resequencing and genetic variation [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 1. (01 January 2008), pp. 65-66. by Michael Stratton posted to variation review resequencing genome enrichment by n00c on 2009-12-03 13:43:15 as along with 6 people and 1 group MarkFiers orzenil Ayest natstreet druvus psique parkinson's disease references
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to solexa sequencing review illumina helicos error-rate 454 by n00c on 2009-12-02 18:06:07 as along with 18 people and 1 group mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali stajich reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Mycology
	A Brief Review of Short Tandem Repeat Mutation [My Copy] Genomics, Proteomics & Bioinformatics, Vol. 5, No. 1. (2007), pp. 7-14. by Hao Fan, Jia-You Chu posted to tandem-repeats review mutation by n00c on 2009-12-02 18:04:00 as along with 1 person druvus
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing review resequencing mapping de-bruijn assembly alignment by n00c on 2009-10-30 19:15:41 as along with 16 people and 1 group claire_jubin idoerg ajsferreira pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor venancio desany Orengo Group Journal Picks
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad,, Jonathan .. Pritchard,, Kevin Thornton, posted to variation solid solexa roche review mosaik illumina false-positive comparison abi 454 by n00c on 2009-10-19 16:04:09 as along with 6 people and 1 group mxm507 operon jwfoley skembel djkt natstreet iSEEM
	Discovering genetic polymorphisms in next-generation sequencing data [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (May 2009), pp. 312-317. by Michael Imelfort, Chris Duran, Jacqueline Batley, David Edwards posted to snp-discovery snp review 2nd-generation by n00c on 2009-10-01 16:20:21 as along with 2 people orzenil darian
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted to review genome assembly by n00c on 2009-09-29 16:28:13 as along with 30 people and 1 group jfr hzoltan cthachuk GustavoLacerda agbiotec shabhonam pachorip APRegier jmcq stevebs jonilaserson michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg Journal picks
	Whole-genome re-sequencing. [My Copy] Current opinion in genetics & development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 545-552. by David R. Bentley posted to viewer review resequencing pipeline gap by n00c on 2009-09-29 16:20:29 as along with 14 people and 3 groups pristanna rshe druvus anuskap mmartin jameswasmuth usagi-kirin jmeppley frohike indigoviolet dchughes azazello jo_davies kmdaily EisenLab G4ID Genetics-of-Gambling
	Sequence assembly [My Copy] Computational Biology and Chemistry, Vol. 33, No. 2. (April 2009), pp. 121-136. by K. Scheibye-Alsing, S. Hoffmann, A. Frankel, et al.P. Jensen, P. F. Stadler, Y. Mang, N. Tommerup, M. J. Gilchrist, A. B. Nygård, S. Cirera posted to sequence review assembly by n00c on 2009-09-28 15:41:33 as along with 9 people darian GustavoLacerda katholt orzenil guhjy natstreet Thaverkamp robsyme druvus
	An Investigation into Assemblers for DNA Sequencing [My Copy] (9 May 2008) by Dominic Harries posted to review report assembly assembler by n00c on 2009-09-28 15:39:47 as along with 2 people darian orzenil
	Impact of the next generation DNA sequencers. [My Copy] International journal of clinical and experimental medicine, Vol. 2, No. 2. (2009), pp. 193-202. by Kikuya Kato posted to sequencing review resequencing dna by n00c on 2009-09-26 01:50:21 as along with 4 people and 1 group dswan jandot sitalange darian Journal picks
	Next-Generation Sequencing: From Basic Research to Diagnostics [My Copy] Clin Chem, Vol. 55, No. 4. (1 April 2009), pp. 641-658. by Karl V. Voelkerding, Shale A. Dames, Jacob D. Durtschi posted to software sequencing review diagnostics by n00c on 2009-09-21 22:50:58 as along with 7 people darian giovenko orzenil natstreet druvus guhjy jasontsai
	Application of 'next-generation' sequencing technologies to microbial genetics [My Copy] Nat Rev Micro, Vol. advanced online publication, No. 4. (23 February 2009), pp. 287-296. by Daniel MacLean, Jonathan D. G. Jones, David J. Studholme posted to sequencing review microbial_genetics graph de-bruijn consensus asssembly by n00c on 2009-09-21 22:48:08 as along with 9 people and 1 group nfparrish kinestetika katholt jlgreen roys robsyme hpaces druvus jmeppley iSEEM
	The Bayesian revolution in genetics [My Copy] Nat Rev Genet, Vol. 5, No. 4. (01 April 2004), pp. 251-261. by Mark A. Beaumont, Bruce Rannala posted to snp-discovery review genetics bayesian by n00c on 2009-09-13 07:14:48 as along with 10 people and 2 groups alexeid garyfeng okarsligil Borelli Ayest dlr kt ichbins81 bmaust phoenixzxl ReadingLab Bioinformatics
	NGS Alignment Viewers [My Copy] by Heng Li posted to visualization viewer sequence review alignment by n00c on 2009-09-01 20:12:51 as
	RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing [My Copy] Methods, Vol. 48, No. 3. (28 July 2009), pp. 249-257. by Brian T. Wilhelm, Josette-Renée Landry posted to methodology review rna-seq short-read by n00c on 2009-07-23 23:49:21 as along with 11 people darian hzoltan manduca inesdesantiago heliopais orzenil woodson8 guhjy tonamswish fenghezi GeeSharpMinor
	A Guided Tour to Approximate String Matching [My Copy] ACM Computing Surveys, Vol. 33 (1999) by Gonzalo Navarro posted to algorithm alignment error-bound review string-matching by n00c on 2009-07-21 18:14:39 as
	Next-generation DNA sequencing techniques [My Copy] New Biotechnology, Vol. 25, No. 4. (03 April 2009), pp. 195-203. by Wilhelm .. Ansorge, posted to review short-read by n00c on 2009-07-06 23:51:40 as along with 9 people darian manduca inesdesantiago heliopais natstreet druvus guhjy svenrahmann ImranRaoufMalik
	RNA-Seq: a revolutionary tool for transcriptomics. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to review rna-seq short-read by n00c on 2009-07-06 23:37:53 as along with 43 people and 1 group bsamal zufar hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	Next-generation DNA sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to short-read review mapping by n00c on 2009-06-25 19:53:12 as along with 49 people and 3 groups tux2000 JamesBarger darian burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton jfr dna nzm farhat idoerg mhz mmartin jbhiatt yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	The impact of next-generation sequencing technology on genetics [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 133-141. by E MARDIS, posted to short-read review mapping by n00c on 2009-06-25 19:50:31 as along with 24 people and 2 groups rshe jasontsai kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen cybaer1 giovenko druvus Green Lab iSEEM
	The need for speed [My Copy] Genome Biology, Vol. 10, No. 3. (2009), 212. by Paul Flicek posted to short-read review mapping bowtie by n00c on 2009-06-10 17:11:24 as along with 3 people and 1 group seb1 ghattem druvus SIMR bioinformatics
	How to map billions of short reads onto genomes. [My Copy] Nature biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to short-read review mapping by n00c on 2009-06-03 19:18:20 as along with 31 people and 5 groups frohike agbiotec burak cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK

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tool	87
genome	81
454	73
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illumina	47
solexa	47
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review	38
tandem-repeats	35
rna-seq	32
snp-calling	30
pyrosequencing	30
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burrows-wheeler	21
de-novo	20
repeats	20
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comparison	16
sv	15
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variant	15
viewer	15
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string-matching	14
variation	13
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paired-end	12
mosaik	12
web-service	12
cnv	11
abi	11
solid	11
indexing	11
suffix-array	11
enrichment	10
spaced-seeds	10
error-bound	10
coverage	10
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microarray	9
capture	9
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lcs	9
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biology	8
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graph	8
genotyping	8
maq	8
compression	8
polybayes	8
de-bruijn	7
bwt	7
error	7
association	7
bacterial	7
presentation	7
flowgram	6
error-rate	6
disease	6
genomics	6
library	6
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roche	6
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ace	4
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soapsnp	4
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euler	4
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centenarian	3
sanger	3
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seed	3
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arachne	2
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phred	2
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eulerian	2
nakatsu	2
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report	2
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trf	2
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nd	2
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vcake	2
biomoby	2
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razers	2
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aml	2
chip-seq	2
consensus	2
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rmap	2
erange	2
gpu	2
pdf	2
ssake	2
staden	2
nussinov	2
linux	2
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shore	2
est	2
navarro	2
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bioconductor	2
ssaha2	2
abyss	2
apple	2
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hardness	1
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path	1
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phusion	1
protocol	1
breakpoint	1
mreps	1
piler	1
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gsmapper	1
element	1
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computer-science	1
false-positive	1
lasergene	1
quantisnp	1
avid	1
somatic-mutation	1
sircah	1
mailing-list	1
complexity	1
lectures	1
lookseq	1
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eland	1
swift	1
pyro-align	1
velvet	1
forum	1
in-silico	1
guide	1
finite-automaton	1
suffix-stree	1
papers	1
slider	1
plant	1

n00c's review [38 articles] Export

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