n00c's rna-seq [32 articles] Export

Recent papers added to n00c's library classified by the tag rna-seq. You can also see everyone's rna-seq.

	Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes. [My Copy] Genes & development In Genes & Development, Vol. 23, No. 12. (15 June 2009), pp. 1379-1386. by Benjamin J. Blencowe, Sidrah Ahmad, Leo J. Lee posted to transcriptome rna-seq review by n00c on 2009-12-08 12:41:39 as along with 6 people and 1 group cthachuk heliopais woodson8 guhjy fenghezi huali SIMR bioinformatics
	Applications of New Sequencing Technologies for Transcriptome Analysis [My Copy] Annual Review of Genomics and Human Genetics, Vol. 10, No. 1. (2009), pp. 135-151. by Olena Morozova, Martin Hirst, Marco A. Marra posted to transcriptome sage rna-seq review by n00c on 2009-12-08 12:37:06 as along with 5 people MarkFiers cthachuk heliopais usagi-kirin scmelton
	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2613-2614. by Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner posted to transcriptome tool software short-read rna-seq mumrescuelite by n00c on 2009-12-08 12:10:17 as along with 6 people and 1 group claire_jubin orzenil guhjy mkiyer natstreet druvus Chinnaiyan Lab
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to software rna-seq review pipeline comparison chip-seq by n00c on 2009-12-03 15:39:10 as along with 27 people and 2 groups humburg fenghezi ongenetics urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3207-3212. by Jacob F. Degner, John C. Marioni, Athma A. Pai, et al.Joseph K. Pickrell, Everlyne Nkadori, Yoav Gilad, Jonathan K. Pritchard posted to rna-seq maq mapping expression comparison bwa bowtie bias by n00c on 2009-12-02 18:23:29 as along with 10 people and 2 groups jherrero68 djkt jperkins humburg dakelley natstreet chvlyl papamicd torfinnnome heliopais Journal picks Orengo Group Journal Picks
	The beginning of the end for microarrays? [My Copy] Nature Methods, Vol. 5, No. 7. (01 July 2008), pp. 585-587. by Jay Shendure posted to transcriptome sage rna-seq microarray est by n00c on 2009-12-01 14:00:37 as along with 17 people jmcq inesdesantiago burak sdvillal VGreiff Borelli bertelsen annaprotasio sanchezbuelna orzenil frohike myourshaw ChrisEvelo megraw kengg marck kintoki
	Transcriptomics: Digging deep with RNA-Seq [My Copy] Nature Reviews Genetics, Vol. 9, No. 8. (01 August 2008), pp. 568-568. by Louisa Flintoft posted to transcriptome rna-seq by n00c on 2009-12-01 13:59:58 as along with 1 person jmcq
	Is sequencing enlightenment ending the dark age of the transcriptome? [My Copy] Nature Methods, Vol. 6, No. 10. (01 October 2009), pp. 711-713. by Piero Carninci posted to transcriptome sequencing rna-seq by n00c on 2009-10-13 20:22:23 as along with 5 people inesdesantiago heliopais druvus megraw maren
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to transcriptome solexa rna-seq illumina by n00c on 2009-09-29 16:29:47 as along with 21 people ongenetics hzoltan torfinnnome ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Comparison of next generation sequencing technologies for transcriptome characterization [My Copy] BMC Genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim L. Mack, Andre Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn Tomsho, Yi Hu, John Carlson, Hong Ma, Stephan Schuster, Douglas Soltis, Pamela Soltis, Naomi Altman, Claude dePamphilis posted to transcriptome technology solid solexa rna-seq illumina comparison abi 454 by n00c on 2009-09-29 16:17:26 as along with 21 people and 4 groups dandaman manduca hzoltan daveGerrard daforerog feeldead debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Direct RNA sequencing [My Copy] Nature, Vol. 461, No. 7265. (23 September 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to transcriptome sequencing rna-seq rna direct-rna-seq by n00c on 2009-09-28 14:10:50 as along with 20 people and 2 groups pmalkus hzoltan manduca gotgenes jwfoley GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK
	Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing. [My Copy] Genome research, Vol. 19, No. 7. (4 July 2009), pp. 1309-1315. by Wei Qu, Shin-Ichi Hashimoto, Shinichi Morishita posted to tree short-read rna-seq mapping cluster algorithm by n00c on 2009-08-07 02:30:07 as along with 9 people mpizbioinfo heliopais druvus megraw nlapalu dakelley djkt operon natstreet
	RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2615-2616. by Nicole Cloonan, Qinying Xu, Geoffrey J. Faulkner, et al.Darrin F. Taylor, Dave T. P. Tang, Gabriel Kolle, Sean M. Grimmond posted to rna-seq rna-mate mapping by n00c on 2009-08-06 02:14:35 as along with 14 people and 1 group hzoltan idonaldson cthachuk ethanmj cassj GeeSharpMinor sbmontgomery shyamsg natstreet dswan druvus samgj guhjy GustavoLacerda Journal picks
	Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq [My Copy] Nucl. Acids Res., Vol. 37, No. 16. (1 September 2009), e106. by Iouri Chepelev, Gang Wei, Qingsong Tang, Keji Zhao posted to rna-seq snp snv transcriptome by n00c on 2009-07-31 17:54:00 as along with 6 people and 1 group hzoltan woodson8 guhjy fenghezi ghattem GeeSharpMinor SIMR bioinformatics
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. [My Copy] Nucleic acids research, Vol. 36, No. 21. (1 December 2008), e141. by Peter A. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan J. van Ommen, Johan T. den Dunnen posted to comparison microarray rna-seq short-read by n00c on 2009-07-30 19:48:58 as along with 26 people zufar manduca hzoltan GustavoLacerda stubrown GeeSharpMinor guhjy hcoller daed poschm stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz pengchy
	Gene expression profiling by massively parallel sequencing [My Copy] Genome research In Genome Research, Vol. 18, No. 1. (21 January 2008), pp. 172-177. by Tatiana T. Torres, Muralidhar Metta, Birgit OttenwÃ¤lder, Christian SchlÃ¶tterer posted to 454 bias gene-expression rna-seq by n00c on 2009-07-30 17:39:19 as along with 20 people chriscole oannes hzoltan manduca druvus daed floatingpoint inesdesantiago orzenil guhjy jfr dchughes stsaft echinotrix giovanni caseybrown ghattem idonaldson ohara gracio
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to software short-read rna-seq gene-expression error comparison clc 454 by n00c on 2009-07-30 17:37:35 as along with 16 people and 3 groups torfinnnome hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol natstreet druvus jbhiatt Journal picks JLab BergmanLab
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted to annotation genome methodology rna-seq short-read by n00c on 2009-07-26 19:35:21 as along with 20 people and 1 group hzoltan cthachuk GustavoLacerda jamselem jonilaserson ghattem nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils SIMR bioinformatics
	RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing [My Copy] Methods, Vol. 48, No. 3. (28 July 2009), pp. 249-257. by Brian T. Wilhelm, Josette-Renée Landry posted to methodology review rna-seq short-read by n00c on 2009-07-23 23:49:21 as along with 11 people darian hzoltan manduca inesdesantiago heliopais orzenil woodson8 guhjy tonamswish fenghezi GeeSharpMinor
	Evidence for human microRNA-offset RNAs in small RNA sequencing data [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2298-2301. by David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler posted to rna-seq segemehl short-read by n00c on 2009-07-23 23:41:11 as along with 8 people and 1 group hzoltan microRNA heliopais dswan natstreet fishtank kutter01 samgj microRNA
	Optimal spliced alignments of short sequence reads. [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch posted to tool splicing software short-read rna-seq qpalma alignment by n00c on 2009-07-07 16:02:01 as along with 13 people and 1 group ongenetics GustavoLacerda darshan natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to review rna-seq short-read by n00c on 2009-07-06 23:37:53 as along with 43 people and 1 group bsamal zufar hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	RNA Sequencing [Archive] - SEQanswers [My Copy] posted to forum rna-seq short-read user-group by n00c on 2009-06-15 19:44:49 as
	BioMicroCenter:IlluminaDataPipeline - OpenWetWare [My Copy] posted to illumina pipeline rna-seq short-read by n00c on 2009-06-15 19:09:28 as
	ERANGE - Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq [My Copy] by Ali Mortazavi, Brian Williams, Kenneth Mccue, Lorian Schaeffer, Barbara Wold posted to erange rna-seq software by n00c on 2009-06-15 18:38:40 as
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted to jennifer-beane rna-seq short-read by n00c on 2009-06-11 19:59:08 as along with 14 people and 1 group hzoltan manduca jmcq natstreet TRHvidsten poschm michaelbarton caseybrown myourshaw djkt jonathanjacobs GeeSharpMinor guhjy semrich Molecular Biology
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to jennifer-beane rna-seq short-read by n00c on 2009-06-11 19:57:52 as along with 49 people and 3 groups sotacam AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda CPI UU SIMR bioinformatics Mycology
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to jennifer-beane rna-seq short-read by n00c on 2009-06-11 19:55:39 as along with 22 people manduca hzoltan jwfoley heliopais jmanning2k stubrown cassj burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted to transcriptome short-read rna-seq mapping by n00c on 2009-06-10 18:11:31 as along with 14 people and 1 group hzoltan manduca jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 ghattem xingxu cajunsushi bandrewfox SIMR bioinformatics
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to transcriptome short-read rna-seq mapping jennifer-beane by n00c on 2009-06-10 18:09:17 as along with 28 people and 2 groups hzoltan zufar eszczurek dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to transcriptome short-read rna-seq nature mapping jennifer-beane erange by n00c on 2009-06-10 17:14:31 as along with 44 people and 2 groups cajunsushi davidmam manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to trapnell tophat splice salzberg rna-seq pachter mapping junction bowtie by n00c on 2009-06-10 17:07:41 as along with 27 people and 2 groups idonaldson ongenetics juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics

Note: You may cite this page as: http://www.citeulike.org/user/n00c/tag/rna-seq

algorithm	111
software	107
short-read	107
sequencing	90
tool	87
genome	82
454	75
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cabog	1
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n00c's rna-seq [32 articles] Export

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