n00c's sequencing [38 articles] Export

Recent papers added to n00c's library classified by the tag sequencing. You can also see everyone's sequencing.

	What would you do if you could sequence everything? [My Copy] Nature Biotechnology, Vol. 26, No. 10. (01 October 2008), pp. 1125-1133. by Avak Kahvejian, John Quackenbush, John F. Thompson posted to sequencing by n00c on 2009-11-24 22:59:29 as along with 19 people hzoltan seb1 inesdesantiago heliopais stubrown installe Annab jfr Borelli jbhiatt Pascalichouchou bertelsen frohike natstreet druvus reyez alexknight psique GeeSharpMinor
	Cheap third-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 4., pp. 244-244. by Nicole Rusk posted to sequencing 3rd-generation by n00c on 2009-11-24 22:59:10 as along with 4 people hzoltan coela cassj dswan
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 860-921. posted to sequencing genome by n00c on 2009-11-24 22:47:03 as along with 38 people and 3 groups rshe timflutre bicko jmanning2k kentz humburg vplagnol mqbphcw3 ThomasDOtto psique timhubbard jo_davies daforerog taroleo micromassive wimufi sgoetz fisherp reyez bozdagd cthachuk Cortel dragonrez jnemecek gg Dax42 aprasad yas balajis xdeupi dullhunk dgront djkt olympos nagendraproj incovoma yoanjacquemin brant Proteinkinases T_lab LabCompMed
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to sequencing pyrosequencing 454 by n00c on 2009-11-23 09:37:05 as along with 38 people and 5 groups rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to variation structure sequencing genome combinatorics algorithm by n00c on 2009-11-06 17:06:53 as along with 17 people hzoltan rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp-discovery snp sequencing pipeline ingap coverage 454 by n00c on 2009-11-02 21:10:08 as along with 4 people jasontsai natstreet heliopais druvus
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to variant structure sequencing mapping genome cnv by n00c on 2009-10-30 19:28:05 as along with 35 people and 2 groups hzoltan daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing review resequencing mapping assembly alignment by n00c on 2009-10-30 19:15:41 as along with 15 people and 1 group idoerg ajsferreira pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor venancio desany Orengo Group Journal Picks
	NGSView: an extensible open source editor for next-generation sequencing data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp611. by Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub posted to viewer tool software sequencing open-source ngsview by n00c on 2009-10-28 12:44:41 as along with 3 people operon heliopais druvus
	The theory of discovering rare variants via DNA sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 485. by Michael Wendl, Richard Wilson posted to variant snp-discovery snp sequencing by n00c on 2009-10-21 18:35:21 as along with 4 people jasontsai jsatkosk merpublic druvus
	Is sequencing enlightenment ending the dark age of the transcriptome? [My Copy] Nature Methods, Vol. 6, No. 10. (01 October 2009), pp. 711-713. by Piero Carninci posted to transcriptome sequencing rna-seq by n00c on 2009-10-13 20:22:23 as along with 5 people inesdesantiago heliopais druvus megraw maren
	Correcting base-assignment errors in repeat regions of shotgun assembly. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 4, No. 1. (r 2007), pp. 54-64. by Degui Zhi, Uri Keich, Pavel Pevzner, Steffen Heber, Haixu Tang posted to sequencing repeats euler base-calling assembly by n00c on 2009-10-13 20:22:18 as along with 2 people dakelley ojabado
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 11 people and 2 groups seninp APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Aspects of coverage in medical DNA sequencing [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (16 May 2008), 239. by Michael Wendl, Richard Wilson posted to sequencing coverage by n00c on 2009-10-01 20:25:28 as along with 2 people sandfire Neeperando
	Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (May 2009), pp. 347-354. by Peter C. Bundock, Frances G. Eliott, Gary Ablett, et al.Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, Robert J. Henry posted to snp-discovery snp sequencing polybayes plant genome 454 by n00c on 2009-10-01 16:17:51 as along with 2 people orzenil natstreet
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to short-read sequencing genome de-novo bacterial assembly by n00c on 2009-10-01 16:16:31 as along with 15 people and 4 groups GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to short-read sequencing assembly by n00c on 2009-10-01 16:14:34 as along with 12 people and 1 group APRegier jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy azazello nedwards iris42 gatech-compgenomics
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to variant snp-discovery sequencing resequencing hapmap genetics exome disorder capture by n00c on 2009-09-28 15:20:55 as along with 23 people and 1 group seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to technology single-molecule sequencing real-time polymerase pacific-biosciences dna chemistry 3rd-generation by n00c on 2009-09-28 15:13:51 as along with 38 people and 3 groups hzoltan operon kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown iSEEM moernerlab Bioinformatics - CRUK
	Direct RNA sequencing. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to transcriptome sequencing rna-seq rna direct-rna-seq by n00c on 2009-09-28 14:10:50 as along with 20 people and 2 groups pmalkus hzoltan manduca gotgenes jwfoley GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK
	Impact of the next generation DNA sequencers. [My Copy] International journal of clinical and experimental medicine, Vol. 2, No. 2. (2009), pp. 193-202. by Kikuya Kato posted to sequencing review resequencing dna by n00c on 2009-09-26 01:50:21 as along with 4 people and 1 group dswan jandot sitalange darian Journal picks
	Next-generation DNA sequencing methods. [My Copy] Annual review of genomics and human genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to solid solexa sequencing illumina abi 454 by n00c on 2009-09-25 17:02:13 as along with 15 people rshe heliopais daforerog stsaft natstreet druvus Vincent_Rouilly Annab floatingpoint yupu LorraineThompson giovenko aheilbut reyez guhjy
	Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing [My Copy] Fungal Ecology, Vol. 2, No. 4. (November 2009), pp. 160-167. by Patrick M. Gillevet, Masoumeh Sikaroodi, Albert P. Torzilli posted to sequencing seqman pyrosequencing genome by n00c on 2009-09-21 23:09:28 as
	Next-generation sequencing: from basic research to diagnostics. [My Copy] Clinical chemistry, Vol. 55, No. 4. (1 April 2009), pp. 641-658. by Karl V. Voelkerding, Shale A. Dames, Jacob D. Durtschi posted to sequencing review by n00c on 2009-09-21 22:50:58 as along with 6 people giovenko orzenil natstreet druvus guhjy jasontsai
	Application of 'next-generation' sequencing technologies to microbial genetics [My Copy] Nat Rev Micro, Vol. advanced online publication, No. 4. (23 February 2009), pp. 287-296. by Daniel MacLean, Jonathan D. G. Jones, David J. Studholme posted to sequencing review microbial_genetics graph de-brujin consensus asssembly by n00c on 2009-09-21 22:48:08 as along with 9 people and 1 group nfparrish kinestetika katholt jlgreen roys robsyme hpaces druvus jmeppley iSEEM
	Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. [My Copy] BMC genomics, Vol. 10, No. 1. (07 June 2009), 259. by Timothy B. Sackton, Andrew G. Clark posted to transcriptome short-read sequencing mosaik cdna by n00c on 2009-09-21 22:44:32 as along with 2 people and 1 group fsm avilella Journal picks
	Next-generation sequencing of vertebrate experimental organisms. [My Copy] Mammalian genome : official journal of the International Mammalian Genome Society, Vol. 20, No. 6. (19 June 2009), pp. 327-338. by Daniel J. Turner, Thomas M. Keane, Ian Sudbery, David J. Adams posted to sequencing mosaik genome by n00c on 2009-09-21 22:43:30 as along with 6 people and 1 group jmcq guhjy jasontsai jessopher druvus AlexBateman Journal picks
	SNP discovery via 454 transcriptome sequencing. [My Copy] The Plant journal : for cell and molecular biology, Vol. 51, No. 5. (September 2007), pp. 910-918. by W. Brad Barbazuk, Scott J. Emrich, Hsin D. Chen, Li Li, Patrick S. Schnable posted to transcriptome snp-discovery sequencing polybayes 454 by n00c on 2009-09-13 09:20:20 as along with 5 people stubrown jlin orzenil guhjy natstreet
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to tool solexa software short-read sequencing illumina bustard bayesian bayescall algorithm by n00c on 2009-09-13 07:34:18 as along with 13 people and 2 groups heliopais dakelley lp2 megraw rdiaz torfinnnome djkt farhat druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to velvet sequencing graph de-novo de-brujin assembly algorithm by n00c on 2009-09-04 16:41:03 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Whole genome assembly from 454 sequencing output via modified DNA graph concept [My Copy] Computational Biology and Chemistry, Vol. 33, No. 3. (04 June 2009), pp. 224-230. by Jacek Blazewicz, Marcin Bryja, Marek Figlerowicz, et al.Piotr Gawron, Marta Kasprzak, Edward Kirton, Darren Platt, Jakub Przybytek, Aleksandra Swiercz, Lukasz Szajkowski posted to sequencing graph de-novo assembly algorithm 454 by n00c on 2009-09-04 13:12:14 as along with 5 people and 1 group GustavoLacerda stajich orzenil natstreet druvus Mycology
	Parallel tagged sequencing on the 454 platform [My Copy] Nature Protocols, Vol. 3, No. 2. (31 January 2008), pp. 267-278. by Matthias Meyer, Udo Stenzel, Michael Hofreiter posted to sequencing pts barcoding 454 by n00c on 2009-08-18 00:49:04 as along with 6 people heliopais jandot GeeSharpMinor maren slevy03 guhjy
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualization viewer software short-read sequencing resequencing lookseq by n00c on 2009-08-14 21:47:57 as along with 27 people and 2 groups hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	Evaluation of next generation sequencing platforms for population targeted sequencing studies [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted to comparison error-model repeats sequencing short-read venn-diagram by n00c on 2009-07-26 19:44:00 as along with 25 people and 2 groups heliopais jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	The development and impact of 454 sequencing [My Copy] Nat Biotech, Vol. 26, No. 10. (October 2008), pp. 1117-1124. by Jonathan M. Rothberg, John H. Leamon posted to 454 sequencing short-read by n00c on 2009-07-07 15:51:17 as along with 11 people katholt jfr yupu frohike natstreet druvus nuin alexknight reyez psique GeeSharpMinor
	SeqAn an efficient, generic C++ library for sequence analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andreas Döring, David Weese, Tobias Rausch, Knut Reinert posted to analysis cplusplus library seqan sequencing software by n00c on 2009-07-07 06:14:12 as along with 16 people aheilbut MarcelSchulz druvus mmartin dquest daforerog groepl guhjy chad_davis laughcry ryanraaum nklee barriot mailund magusina reyez
	Probabilistic base calling of Solexa sequencing data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted to tool solexa software sequencing rolexa r quality illumina base-calling by n00c on 2009-07-07 06:12:40 as along with 16 people and 1 group heliopais orzenil dakelley jfr usagi-kirin magusina malcook natstreet druvus iris42 abizar caseybrown reyez pengchy waszak nuin SIMR bioinformatics
	Oxford Journals \| Life Sciences \| Bioinformatics \| Next Generation Sequencing [My Copy] posted to links sequencing short-read by n00c on 2009-07-05 18:12:00 as along with 4 people and 1 group humburg renatomilani idoerg polivares BergmanLab

Note: You may cite this page as: http://www.citeulike.org/user/n00c/tag/sequencing

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map	50
snp	48
genome	47
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