n00c's short-read [91 articles] Export

Recent papers added to n00c's library classified by the tag short-read. You can also see everyone's short-read.

	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing [My Copy] Bioinformatics (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to short-read map gnumap algorithm by n00c on 2009-10-28 23:01:09 as along with 3 people operon heliopais druvus
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to short-read paired-end genome de-brujin bacterial assembly allpaths2 allpaths by n00c on 2009-10-28 13:10:39 as along with 10 people and 1 group djkt azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2865-2871. by Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning posted to short-read pindel paired-end breakpoints by n00c on 2009-10-22 19:40:11 as along with 5 people torfinnnome dakelley natstreet druvus vplagnol
	Sequencing of natural strains of Arabidopsis thaliana with short reads [My Copy] Genome Research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 10 people and 2 groups APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to short-read sequencing genome de-novo bacterial assembly by n00c on 2009-10-01 16:16:31 as along with 15 people and 4 groups GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to short-read sequencing assembly by n00c on 2009-10-01 16:14:34 as along with 12 people and 1 group APRegier jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy azazello nedwards iris42 gatech-compgenomics
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to short-read genome bacterial assembly assembler by n00c on 2009-09-28 15:27:39 as along with 16 people and 5 groups operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to tool software short-read genome eulerian assembly assembler by n00c on 2009-09-28 15:23:30 as along with 17 people pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG) [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2863-2864. by Michael Brudno, Paul Medvedev, Jens Stoye, Francisco M. De La Vega posted to short-read report algorithm by n00c on 2009-09-25 17:10:21 as along with 3 people seb1 idonaldson druvus
	Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences [My Copy] Journal of Computational Biology (22 September 2009), 090922085727012. by Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike posted to solexa short-read illumina burrows-wheeler algorithm by n00c on 2009-09-23 21:05:06 as along with 3 people seb1 justinhjohnson druvus
	Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. [My Copy] BMC genomics, Vol. 10, No. 1. (07 June 2009), 259. by Timothy B. Sackton, Andrew G. Clark posted to transcriptome short-read sequencing mosaik cdna by n00c on 2009-09-21 22:44:32 as along with 2 people and 1 group fsm avilella Journal picks
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to tool solexa software short-read sequencing illumina bustard bayesian bayescall algorithm by n00c on 2009-09-13 07:34:18 as along with 12 people and 2 groups dakelley lp2 megraw rdiaz torfinnnome djkt farhat druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to tool software short-read segemehl map alignment by n00c on 2009-09-11 15:38:04 as along with 17 people and 4 groups darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Genomic Variation Discovery [My Copy] by Michael Strömberg posted to variant solexa snp-calling short-read resequencing presentation mosaik illumina gigabayes 454 by n00c on 2009-09-10 17:59:42 as
	Updates to the RMAP short-read mapping software [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2841-2842. by Andrew D. Smith, Wen-Yu Chung, Emily Hodges, et al.Jude Kendall, Greg Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang posted to tool software short-read rmap resequencing map by n00c on 2009-09-08 23:08:52 as along with 7 people and 1 group darian natstreet djkt rtogawa idonaldson heliopais druvus Journal picks
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to solid short-read seed perm map color-space abi by n00c on 2009-08-15 15:42:05 as along with 8 people and 1 group darian dswan operon fishtank polivares torfinnnome druvus natstreet BergmanLab
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualization viewer software short-read sequencing resequencing lookseq by n00c on 2009-08-14 21:47:57 as along with 26 people and 2 groups darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to bowtie burrows-wheeler map short-read software tool by n00c on 2009-08-07 03:42:56 as along with 34 people and 4 groups cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome talponer jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to alignment blat short-read software tool by n00c on 2009-08-07 02:44:24 as along with 36 people and 3 groups rshe dchughes rdowell gwallau druvus aprasad maria_hauser sficklin Thaverkamp cpwardell daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros BergmanLab EisenLab
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment blast short-read software tool by n00c on 2009-08-07 02:40:27 as along with 73 people and 6 groups rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 7. (4 July 2009), pp. 1309-1315. by Wei Qu, Shin-ichi Hashimoto, Shinichi Morishita posted to algorithm cluster map rna-seq short-read tree by n00c on 2009-08-07 02:30:07 as along with 7 people druvus megraw nlapalu dakelley djkt operon natstreet
	ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2607-2608. by Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman posted to bioconductor r short-read shortread by n00c on 2009-08-05 17:02:02 as along with 13 people and 1 group darian jforment fstrozzi rschulz djkt jmeppley dswan torfinnnome walshtp jamesmorris joaocarrico natstreet druvus Bioinformatics Core Service
	Short read DNA fragment anchoring algorithm [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009), S17. by Wendi Wang, Peiheng Zhang, Xinchun Liu posted to algorithm alignment short-read by n00c on 2009-07-31 18:24:28 as along with 1 person druvus
	RazerSâfast read mapping with sensitivity control [My Copy] Genome Research, Vol. 19, No. 9. (10 September 2009), pp. 1646-1654. by David Weese, Anne-Katrin Emde, Tobias Rausch, Andreas DÃ¶ring, Knut Reinert posted to algorithm map razers short-read software tool by n00c on 2009-07-31 13:56:26 as along with 5 people and 1 group heliopais jandot reyez druvus natstreet Journal picks
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), e141. by Peter A. C. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. A. M. Vossen, Renee X. de Menezes, Judith M. Boer, Gert-Jan B. van Ommen, Johan T. den Dunnen posted to comparison microarray rna-seq short-read by n00c on 2009-07-30 19:48:58 as along with 23 people GustavoLacerda stubrown GeeSharpMinor guhjy hcoller daed poschm stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz pengchy
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to software short-read rna-seq gene-expression error comparison clc 454 by n00c on 2009-07-30 17:37:35 as along with 14 people and 3 groups darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol natstreet druvus jbhiatt Journal picks JLab BergmanLab
	Alta-Cyclic: a self-optimizing base caller for next-generation sequencing [My Copy] Nat Meth, Vol. 5, No. 8. (06 July 2008), pp. 679-682. by Yaniv Erlich, Partha P. Mitra, Melissa delaBastide, W. Richard McCombie, Gregory J. Hannon posted to alta-cyclic base-calling illumina short-read software solexa tool by n00c on 2009-07-27 23:34:18 as along with 6 people guhjy dakelley druvus natstreet caseybrown gdb
	Evaluation of next generation sequencing platforms for population targeted sequencing studies [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted to comparison error-model repeats sequencing short-read venn-diagram by n00c on 2009-07-26 19:44:00 as along with 22 people and 2 groups dbensasson GustavoLacerda adijr agbiotec jgill darian jandot jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted to annotation genome methodology rna-seq short-read by n00c on 2009-07-26 19:35:21 as along with 19 people and 1 group cthachuk GustavoLacerda jamselem jonilaserson ghattem nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils SIMR bioinformatics
	RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing [My Copy] Methods, Vol. 48, No. 3. (28 July 2009), pp. 249-257. by Brian T. Wilhelm, Josette-Renée Landry posted to methodology review rna-seq short-read by n00c on 2009-07-23 23:49:21 as along with 10 people hzoltan manduca inesdesantiago heliopais orzenil woodson8 guhjy tonamswish fenghezi GeeSharpMinor
	Evidence for human microRNA-offset RNAs in small RNA sequencing data [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2298-2301. by David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler posted to rna-seq segemehl short-read by n00c on 2009-07-23 23:41:11 as along with 7 people and 1 group microRNA heliopais dswan natstreet fishtank kutter01 samgj microRNA
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to enrichment findpeaks short-read by n00c on 2009-07-23 23:35:29 as along with 18 people and 2 groups darian polivares idonaldson tonamswish ewilban1 humburg Thaverkamp natstreet druvus stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics Mycology
	PIQA: pipeline for Illumina G1 genome analyzer data quality assessment [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2438-2439. by A. Martinez-Alcantara, E. Ballesteros, C. Feng, et al.M. Rojas, H. Koshinsky, V. Y. Fofanov, P. Havlak, Y. Fofanov posted to illumina pipeline piqa quality short-read solexa by n00c on 2009-07-17 14:18:04 as along with 2 people djkt guhjy
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to alignment rna-seq short-read splicing by n00c on 2009-07-07 16:02:01 as along with 12 people and 1 group GustavoLacerda darshan natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	The development and impact of 454 sequencing [My Copy] Nat Biotech, Vol. 26, No. 10. (October 2008), pp. 1117-1124. by Jonathan M. Rothberg, John H. Leamon posted to 454 sequencing short-read by n00c on 2009-07-07 15:51:17 as along with 11 people katholt jfr yupu frohike natstreet druvus nuin alexknight reyez psique GeeSharpMinor
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to resequencing short-read snp snp-calling by n00c on 2009-07-07 06:09:12 as along with 16 people seb1 maren adijr greg jandot guhjy jonilaserson druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	SNP-o-matic [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2434-2435. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to short-read snp-o-matic software tool by n00c on 2009-07-07 05:48:55 as along with 10 people and 1 group darian GeeSharpMinor daforerog ThomasDOtto natstreet misonneh druvus guhjy Zephyrus orzenil Journal picks
	Next-generation DNA sequencing techniques [My Copy] New Biotechnology, Vol. 25, No. 4. (03 April 2009), pp. 195-203. by Wilhelm J. Ansorge posted to review short-read by n00c on 2009-07-06 23:51:40 as along with 7 people inesdesantiago heliopais natstreet druvus guhjy svenrahmann ImranRaoufMalik
	Overlapping pools for high-throughput targeted resequencing [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1254-1261. by Snehit Prabhu, Itsik Pe'er posted to short-read resequencing pool-design pool multiplexing gamma-distribution error-model by n00c on 2009-07-06 23:39:41 as along with 12 people and 1 group jandot guhjy pkonings jcbarret orzenil natstreet druvus dandaman xingxu sameersoi djkt jdbowes Journal picks
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to review rna-seq short-read by n00c on 2009-07-06 23:37:53 as along with 39 people hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. i32-40. by Iman Hajirasouliha, Fereydoun Hormozdiari, S. Cenk Sahinalp, Inanc Birol posted to short-read resequencing pool-design pool multiplexing by n00c on 2009-07-06 23:11:17 as along with 7 people manduca orzenil druvus babakap kittipat reyez Neeperando
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to abi color-space map short-read solid by n00c on 2009-07-06 23:09:37 as along with 16 people bozdagd fishtank burak ThomasDOtto mmartin natstreet adijr druvus felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	Oxford Journals \| Life Sciences \| Bioinformatics \| Next Generation Sequencing [My Copy] posted to links sequencing short-read by n00c on 2009-07-05 18:12:00 as along with 4 people and 1 group humburg renatomilani idoerg polivares BergmanLab
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to algorithm error short-read by n00c on 2009-06-26 15:36:30 as along with 12 people and 1 group adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa torfinnnome natstreet druvus jmeppley Journal picks
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to tool swift software short-read pipeline open-source base-calling by n00c on 2009-06-26 15:27:58 as along with 19 people and 4 groups dakelley sotacam lh49 djkt rtogawa cassj dswan torfinnnome rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	Next-generation DNA sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to map review short-read by n00c on 2009-06-25 19:53:12 as along with 42 people and 3 groups cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	The impact of next-generation sequencing technology on genetics. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 133-141. by Elaine R. Mardis posted to map review short-read by n00c on 2009-06-25 19:50:31 as along with 24 people and 2 groups rshe jasontsai kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen cybaer1 giovenko druvus Green Lab iSEEM
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted to algorithm assembly map short-read by n00c on 2009-06-23 11:21:20 as along with 14 people and 2 groups cthachuk orzenil GustavoLacerda APRegier dakelley katholt GeeSharpMinor dayjm djkt dswan pachorip natstreet druvus jmeppley Bioinformatics Journal picks
	Quantification of rare allelic variants from pooled genomic DNA [My Copy] Nat Meth, Vol. 6, No. 4. (01 April 2009), pp. 263-265. by Todd E. Druley, Francesco L. M. Vallania, Daniel J. Wegner, et al.Katherine E. Varley, Olivia L. Knowles, Jacqueline A. Bonds, Sarah W. Robison, Scott W. Doniger, Aaron Hamvas, F. Sessions Cole, Justin C. Fay, Robi D. Mitra posted to multiplex pooled short-read by n00c on 2009-06-19 18:29:12 as along with 9 people jonilaserson austin_mcdonald natstreet guhjy fenghezi giovanni psique absterga jbhiatt
	DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis. [My Copy] Genome research, Vol. 19, No. 7. (15 July 2009), pp. 1243-1253. by Yaniv Erlich, Kenneth Chang, Assaf Gordon, et al.Roy Ronen, Oron Navon, Michelle Rooks, Gregory J. Hannon posted to sudoku short-read resequencing pool-design multiplexing by n00c on 2009-06-19 17:18:22 as along with 18 people and 1 group orzenil heliopais qayub jandot pkonings jcbarret nlapalu guhjy fenghezi dandaman xingxu djkt ppgardne daforerog rpatward jbhiatt natstreet samgj Journal picks

Note: You may cite this page as: http://www.citeulike.org/user/n00c/tag/short-read

Result page: 1 2 Next

short-read	91
algorithm	82
software	62
map	48
snp	45
tool	45
genome	44
alignment	43
resequencing	40
sequencing	34
454	33
assembly	29
snp-discovery	29
rna-seq	25
snp-calling	25
illumina	21
solexa	21
review	20
data-structure	17
sequence	16
burrows-wheeler	15
tpgp	15
bayesian	14
string-matching	14
transcriptome	13
web-service	12
de-novo	11
individual-human-genome	11
visualization	11
abi	10
assembler	10
error-bound	10
pipeline	10
solid	10
variant	10
bioinformatics	9
indexing	9
lcs	9
mosaik	9
pyrosequencing	9
repeats	9
viewer	9
error-model	8
polybayes	8
quality	8
suffix-array	8
suffix-tree	8
base-calling	7
comparison	7
database	7
error	7
microarray	7
genomics	6
tandem	6
dna	5
genotyping	5
graph	5
jennifer-beane	5
li	5
library	5
methods	5
multiplexing	5
seqman	5
suffix	5
tree	5
web	5
book	4
bu	4
clc	4
cnv	4
color-space	4
compression	4
coverage	4
enhanced-suffix-array	4
fm-index	4
gigabayes	4
machine-learning	4
polymorphism	4
pool	4
pool-design	4
presentation	4
structure	4
tandem-repeats	4
text	4
variation	4
venter	4
bacterial	3
bowtie	3
browser	3
cloud-computing	3
copy-number	3
data	3
de-brujin	3
differential-gene-expression	3
landau	3
lbi	3
maq	3
newbler	3
open-source	3
r	3
research	3
space	3
statistics	3
vishkin	3
workflow	3
3rd-generation	2
ace	2
allpaths	2
aml	2
apple	2
asian	2
bias	2
bioconductor	2
biomoby	2
bumc	2
bwa	2
combinatorics	2
cplusplus	2
dbsnp	2
durbin	2
dust	2
erange	2
eulerian	2
gene-expression	2
genetics	2
gff	2
gpu	2
graph-theory	2
gui	2
hapmap	2
helicos	2
human	2
huref	2
lecroq	2
leukemia	2
linux	2
liver	2
low-complexity	2
mapping	2
methodology	2
microbial_genetics	2
mouse	2
multiple-alignment	2
nakatsu	2
navarro	2
nd	2
novosnp	2
np-complete	2
nqs	2
nussinov	2
organization	2
paired-end	2
paired-ends	2
pdf	2
phred	2
pyrobayes	2
registry	2
report	2
rmap	2
seed	2
segemehl	2
sff	2
single-molecule	2
soap	2
sudoku	2
technology	2
tfs	2
tutorial	2
user-group	2
validation	2
venn-diagram	2
virus	2
watson	2
waxman	2
1000-genomes	1
2nd-generation	1
abyss	1
allpaths2	1
alphabet	1
alta-cyclic	1
analysis	1
annotation	1
arabidopsis	1
array	1
asssembly	1
asymptotic	1
avid	1
bachmann-landau	1
bank	1
barcoding	1
bayescall	1
bibliography	1
big-o	1
binding	1
biohaskell	1
biomart	1
blast	1
blat	1
bound	1
boyer-moore	1
breakpoints	1
bustard	1
bwt	1
bwt-sw	1
cancer	1
cap3	1
capture	1
casava	1
cdna	1
chemistry	1
cloudburst	1
cluster	1
clustering	1
cnv-seq	1
color	1
computer-science	1
conference	1
connected-component	1
consed	1
consensus	1
csa	1
datamining	1
depth-of-coverage	1
detection	1
dibase	1
difference	1
direct-rna-seq	1
disorder	1
dynamic-programming	1
eagleview	1
ebi	1
eland	1
element	1
enrichment	1
euler	1
exome	1
factor-oracle	1
false-positive	1
faq	1
fastq	1
file	1
findpeaks	1
finite-automaton	1
firefox	1
fm-kz	1
forage	1
format	1
forum	1
framework	1
frequency	1
f-seq	1
function	1
galign	1
gamma-distribution	1
gap	1
gastroenteritis	1
genetic_association_studies	1
genome-browser	1
genome-sequencer-flx	1
genotyping-errors	1
global	1
gnumap	1
greed	1
gsmapper	1
guide	1
gwas	1
haplosnper	1
haplotype	1
haskell	1
hawkeye	1
heatmap	1
hirschberg	1
hnf4alpha	1
huffman	1
hunt-szymanski	1
igraph	1
indel	1
inference	1
ingap	1
in-silico	1
iphone	1
javascript	1
jbrowse	1
junction	1
kautz-zeckendorf	1
k-means	1
laboratory	1
lasergene	1
lectures	1
links	1
local	1
lookseq	1
mailing-list	1
mapview	1
marth	1
mask	1
mathworks	1
matlab	1
maximum-likelihood	1
meeting	1
mendeley	1
mining	1
minisatellites	1
misassembly	1
mobyle	1
mom	1
mrfast	1
mrna	1
multiplex	1
mummer	1
mutation	1
mutations	1
mvf	1
myers	1
myexperiment	1
nature	1
ncbi	1
network	1
neural-network	1
newsarticle	1
ngsview	1
nimblegen	1
notation	1
novosnp3	1
oasis	1
order	1
oslay	1
pachter	1
pacific-biosciences	1
palindromes	1
palma	1
papers	1
parallel	1
pass	1
patman	1
perm	1
pileup	1
pindel	1
pinesap	1
piqa	1
planet	1
plant	1
plugin	1
polyfreq	1
polymerase	1
polyscan	1
pooled	1
pooling	1
population	1
prediction	1
primer	1
probability	1
probhd	1
programming	1
protocol	1
provenance	1
pruning	1
pts	1
q-gram	1
qsra	1
razers	1
real-time	1
reps	1
reputer	1
rna	1
rna-mate	1
roche	1
rolexa	1
ruby	1
salzberg	1
sam	1
samtools	1
scripting	1
scs	1
semantic	1
semantic-web	1
semi-global	1
semi-local	1
seqan	1
seqmap	1
set	1
sharcgs	1
shore	1
shortread	1
shorty	1
shrimp	1
sickle-cell	1
slider	1
sliding-window	1
smith-waterman	1
snpdetector	1
snp-discovert	1
snp-o-matic	1
snp-phage	1
snv	1
soap2	1
social	1
splice	1
splicing	1
ssaha	1
ssaha2	1
ssaha_pileup	1
ssahasnp	1
stat5a	1
string-scanning	1
subquadratic	1
subsequence	1
suffix-stree	1
survey	1
swift	1
tagdust	1
tandem-repeat-finder	1
textbook	1
tile	1
tileqc	1
toolkit	1
tools	1
tophat	1
toronto-2008	1
trapnell	1
trdb	1
t-reks	1
trf	1
tview	1
ucsc	1
unofficial	1
varscan	1
velvet	1
web-server	1
windowmasker	1
yh	1
yoruba	1
zoom	1

n00c's short-read [91 articles] Export

n00c's tags