n00c's snp-calling [30 articles] Export Sort

Recent papers added to n00c's library classified by the tag snp-calling. You can also see everyone's snp-calling.

Hide details

	Exome Sequencing of a Multigenerational Human Pedigree [My Copy] PLoS ONE, Vol. 4, No. 12. (14 December 2009), e8232. by Dale Hedges, Dan Burges, Eric Powell, et al.Cherylyn Almonte, Jia Huang, Stuart Young, Benjamin Boese, Mike Schmidt, Margaret A. Pericak-Vance, Eden Martin, Xinmin Zhang, Timothy T. Harkins, Stephan Züchner posted to snp-calling snp sequencing pedigree illumina hcdiff exome error-model enrichment comparison capture beadarray 454 by n00c on 2009-12-14 20:33:48 as along with 2 people daforerog torfinnnome
	Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (2009), pp. 334-346. by Martin Trick, Yan Long, Jinling Meng, Ian Bancroft posted to transcriptome solexa snp-discovery snp-calling snp maqview maq illumina by n00c on 2009-12-03 13:12:16 as along with 3 people and 1 group natstreet ArtemPankin druvus Khavkin's lab
	Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing [My Copy] PLoS ONE In PLoS ONE, Vol. 4, No. 8. (17 August 2009), e6659. by Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, et al.Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis posted to variation solexa snp-calling rolexa resequencing illumina genome enrichment capture by n00c on 2009-11-30 21:05:35 as along with 2 people torfinnnome thegoose
	ssahaSNP – A Polymorphism Detection Tool by Genomic Alignment [My Copy] BMC Genomics by James C. Mullikin, Adam Spargo, Nikolai Ivanov, Mario Caccamo, Zemin Ning posted to variant-calling tool ssahasnp ssaha2 software snp-discovery snp-calling snp by n00c on 2009-11-30 14:20:33 as
	Comprehensive resequence analysis of a 97 kb region of chromosome 10q11.2 containing the MSMB gene associated with prostate cancer [My Copy] Human Genetics (31 July 2009) by Meredith Yeager, Zuoming Deng, Joseph Boland, et al.Casey Matthews, Jennifer Bacior, Victor Lonsberry, Amy Hutchinson, Laura Burdett, Liqun Qi, Kevin Jacobs, Jesus Gonzalez-Bosquet, Sonja Berndt, Richard Hayes, Robert Hoover, Gilles Thomas, David Hunter, Michael Dean, Stephen Chanock posted to variant-calling target-region snp-calling resequencing mosaik 454 by n00c on 2009-11-16 23:28:24 as along with 1 person xingxu
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 11 people and 2 groups seninp APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Genotyping of James Watson from Low-coverage Sequencing Data [My Copy] by Sanjiv Dinakar, Yözen Hernández posted to watson snp-discovery snp-calling snp resequencing presentation genotyping coverage bayesian by n00c on 2009-10-05 16:44:36 as
	Calling Sequencing SNPs [My Copy] posted to solexa snp-calling snp illumina casava bayesian by n00c on 2009-10-02 15:38:00 as
	DiBayes: A SNP Detection Algorithm for Next-Generation Dibase Sequencing [My Copy] by Susan Tang, Fiona C. L. Hyland, Thomas C. Wessel, Jon Sorenson, Heather Peckham, Francisco M. De La Vega posted to solid snp-calling dibase bayesian algorithm abi by n00c on 2009-09-28 16:16:33 as
	HaploSNPer: a web-based allele and SNP detection tool [My Copy] BMC Genetics, Vol. 9, No. 1. (28 February 2008), 23. by Jifeng Tang, Jack Leunissen, Roeland Voorrips, C. Gerard van der Linden, Ben Vosman posted to web tool software snp-calling snp haplosnper by n00c on 2009-09-18 18:57:07 as along with 3 people daforerog orzenil guhjy
	Model-Based Quality Assessment and Base-Calling For Second-Generation Sequencing [My Copy] by Rafael Irizarry posted to solexa snp-calling resequencing quality presentation illumina genotyping error-model error base-calling by n00c on 2009-09-18 16:42:02 as
	SNP-PHAGE - High throughput SNP discovery pipeline [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (23 October 2006), 468. by Lakshmi Matukumalli, John Grefenstette, David Hyten, Ik Y. Choi, Perry Cregan, Curtis Van Tassell posted to tool snp-phage snp-discovery snp-calling snp pipeline machine-learning by n00c on 2009-09-17 19:53:45 as along with 6 people sandfire csrocha daforerog natstreet druvus guhjy
	SNPdetector: a software tool for sensitive and accurate SNP detection. [My Copy] PLoS computational biology, Vol. 1, No. 5. (28 October 2005), e53. by Jinghui Zhang, David A. Wheeler, Imtiaz Yakub, et al.Sharon Wei, Raman Sood, William Rowe, Paul P. Liu, Richard A. Gibbs, Kenneth H. Buetow posted to tool software snpdetector snp-calling snp nqs by n00c on 2009-09-17 19:51:00 as along with 4 people csrocha natstreet druvus Ayest
	An SNP map of the human genome generated by reduced representation shotgun sequencing [My Copy] Nature, Vol. 407, No. 6803. (28 September 2000), pp. 513-516. by David Altshuler, Victor J. Pollara, Chris R. Cowles, et al.William J. Van Etten, Jennifer Baldwin, Lauren Linton, Eric S. Lander posted to snp-discovery snp-calling snp nqs by n00c on 2009-09-13 22:20:10 as along with 2 people jlin lpanunzi
	New strategy to detect single nucleotide polymorphisms. [My Copy] Genetics and molecular research : GMR, Vol. 5, No. 1. (31 March 2006), pp. 143-153. by Miguel Galves, José Augusto Amgarten A. Quitzau, Zanoni Dias posted to snp-discovery snp-calling snp algorithm by n00c on 2009-09-13 09:23:02 as along with 1 person Ayest
	Application of machine learning in SNP discovery [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 4. by Lakshmi Matukumalli, John Grefenstette, David Hyten, Ik Y. Choi, Perry Cregan, Curtis Van Tassell posted to snp-discovery snp-calling machine-learning algorithm by n00c on 2009-09-13 09:21:42 as along with 1 person and 1 group druvus Visiting Position
	A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 220. by Jianmin Wang, Xiaoqiu Huang posted to tool software snp-discovery snp-calling polyfreq by n00c on 2009-09-13 09:18:53 as along with 1 person orzenil
	Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences [My Copy] Nat Genet, Vol. 26, No. 2. (01 October 2000), pp. 233-236. by Kris Irizarry, Vlad Kustanovich, Cheng Li, et al.Nik Brown, Stanley Nelson, Wing Wong, Christopher J. Lee posted to snp-calling snp genome bayesian by n00c on 2009-09-13 07:13:33 as along with 1 person slevy03
	PolyBayes [My Copy] by Ruslan Salakhutdinov posted to snp-calling snp pyrobayes primer presentation polybayes bayesian 454 by n00c on 2009-09-11 20:10:20 as
	Genomic Variation Discovery [My Copy] by Michael Strömberg posted to variant solexa snp-calling short-read resequencing presentation mosaik illumina gigabayes 454 by n00c on 2009-09-10 17:59:42 as
	A general approach to single-nucleotide polymorphism discovery [My Copy] Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456. by Gabor T. Marth, Ian Korf, Mark D. Yandell, et al.Raymond T. Yeh, Zhijie Gu, Hamideh Zakeri, Nathan O. Stitziel, Ladeana Hillier, Pui-Yan Kwok, Warren R. Gish posted to snp-discovery snp-calling snp polybayes bayesian by n00c on 2009-09-03 16:28:35 as along with 4 people and 1 group gpappas Ayest azazello farhat gatech-compgenomics
	Rapid whole-genome mutational profiling using next-generation sequencing technologies [My Copy] Genome research In Genome Research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing pyrobayes mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor
	PineSAP--sequence alignment and SNP identification pipeline [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2609-2610. by Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale posted to software snp-calling snp resequencing pipeline pinesap machine-learning alignment by n00c on 2009-08-17 01:57:22 as along with 7 people jasontsai jsatkosk daforerog djkt operon nuin druvus
	High-throughput genotyping by whole-genome resequencing. [My Copy] Genome research, Vol. 19, No. 6. (6 June 2009), pp. 1068-1076. by Xuehui Huang, Qi Feng, Qian Qian, et al.Qiang Zhao, Lu Wang, Ahong Wang, Jianping Guan, Danlin Fan, Qijun Weng, Tao Huang, Guojun Dong, Tao Sang, Bin Han posted to genotyping resequencing snp snp-calling by n00c on 2009-08-07 02:36:21 as along with 9 people APRegier jandot reyez sandfire djkt natstreet jbhiatt GeeSharpMinor langmead
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted to variant tpgp solid snp-calling snp resequencing abi by n00c on 2009-07-29 18:04:49 as along with 18 people jessopher hzoltan gbenson adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi APRegier fenghezi jmanning2k xingxu pkonings jandot natstreet
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to varscan variant tool software snp-calling snp resequencing 454 by n00c on 2009-07-27 19:59:29 as along with 16 people and 3 groups humburg hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	A probabilistic approach for SNP discovery in high-throughput human resequencing data [My Copy] Genome Research In Genome Research, Vol. 19, No. 9. (15 September 2009), pp. 1542-1552. by Rose Hoberman, Joana Dias, Bing Ge, et al.Eef Harmsen, Michael Mayhew, Dominique J. Verlaan, Tony Kwan, Ken Dewar, Mathieu Blanchette, Tomi Pastinen posted to snp-discovery snp-calling snp resequencing probhd mosaik 454 by n00c on 2009-07-27 19:50:53 as along with 8 people orzenil druvus sameersoi megraw guhjy fenghezi natstreet djkt
	Quality scores and SNP detection in sequencing-by-synthesis systems [My Copy] Genome Research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to tool swap454 software snp-calling snp resequencing quality nqs broad-institute 454 by n00c on 2009-07-20 18:18:21 as along with 13 people humburg jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson bpb Neeperando sharpton GustavoLacerda
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to soapsnp snp-calling snp short-read resequencing by n00c on 2009-07-07 06:09:12 as along with 20 people claire_jubin humburg torfinnnome hzoltan seb1 maren adijr greg jandot guhjy jonilaserson druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	GigaBayes - The MarthLab [My Copy] posted to gigabayes snp-calling snp-discovery software tool by n00c on 2009-07-07 04:01:53 as

Note: You may cite this page as: http://www.citeulike.org/user/n00c/tag/snp-calling

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

algorithm	111
software	107
short-read	107
sequencing	90
tool	87
genome	82
454	75
snp	70
assembly	68
mapping	61
resequencing	53
solexa	49
illumina	49
alignment	48
snp-discovery	40
review	39
tandem-repeats	35
rna-seq	32
pyrosequencing	30
snp-calling	30
transcriptome	25
sequence	25
data-structure	22
burrows-wheeler	21
de-novo	21
repeats	20
assembler	19
error-model	18
vntr	18
visualization	17
comparison	16
bayesian	16
pipeline	15
viewer	15
tpgp	15
sv	15
variant	15
string-matching	14
variation	13
individual-human-genome	13
paired-end	12
web-service	12
mosaik	12
solid	12
abi	11
suffix-array	11
cnv	11
indexing	11
coverage	10
technology	10
quality	10
spaced-seeds	10
enrichment	10
error-bound	10
bioinformatics	9
homology	9
microarray	9
suffix-tree	9
base-calling	9
lcs	9
capture	9
database	9
compression	8
haplotype	8
biology	8
graph	8
polybayes	8
maq	8
genotyping	8
association	7
error	7
bwt	7
bacterial	7
presentation	7
de-bruijn	7
flowgram	6
genomics	6
fm-index	6
copy-number	6
web	6
disease	6
error-rate	6
gigabayes	6
roche	6
library	6
tandem	6
dna	6
data	5
seqman	5
longevity	5
model	5
jennifer-beane	5
suffix	5
soap	5
cancer	5
helicos	5
methods	5
pyrobayes	5
tree	5
detection	5
newbler	5
li	5
mutation	5
book	5
mapper	5
bowtie	5
3rd-generation	5
multiplexing	5
euler	4
gwas	4
ace	4
pool-design	4
bu	4
machine-learning	4
polymorphism	4
haplotyping	4
enhanced-suffix-array	4
finishing	4
single-molecule	4
sff	4
sanger	4
human-genome	4
cloud-computing	4
clc	4
color-space	4
pool	4
soapsnp	4
variant-calling	4
text	4
shotgun	4
venter	4
browser	4
exome	4
metagenomics	3
function	3
parallel	3
gene-expression	3
clustering	3
pacific-biosciences	3
aging	3
nqs	3
landau	3
lbi	3
r	3
scaffold	3
gap4	3
vishkin	3
simulation	3
annotation	3
celera	3
bias	3
2nd-generation	3
format	3
workflow	3
bwa	3
human	3
centenarian	3
space	3
statistics	3
open-source	3
differential-gene-expression	3
ssahasnp	3
seed	3
research	3
scaffolding	2
fastq	2
arachne	2
multiple-alignment	2
sage	2
organization	2
phred	2
sudoku	2
durbin	2
hapmap	2
mitochondria	2
subsequence	2
bumc	2
tfs	2
genetics	2
q-gram	2
eulerian	2
real-time	2
user-group	2
web-server	2
gpu	2
file-format	2
str	2
leukemia	2
mouse	2
nakatsu	2
sam	2
indel	2
trf	2
rolexa	2
watson	2
dbsnp	2
methodology	2
cap3	2
gui	2
linux	2
file	2
pooling	2
nd	2
report	2
frequency	2
graph-theory	2
dupfinisher	2
np-complete	2
maximum-likelihood	2
novosnp	2
biomoby	2
dust	2
lecroq	2
vcake	2
liver	2
huref	2
asian	2
gff	2
repeatgluer	2
diagnostics	2
registry	2
tutorial	2
allpaths	2
homopolymer	2
aml	2
chip-seq	2
virus	2
segemehl	2
consensus	2
venn-diagram	2
alta-cyclic	2
razers	2
cplusplus	2
pdf	2
erange	2
rmap	2
haskell	2
est	2
combinatorics	2
validation	2
list	2
ssake	2
nussinov	2
staden	2
shore	2
microbial_genetics	2
navarro	2
bloom-filter	2
low-complexity	2
bioconductor	2
abyss	2
ssaha2	2
apple	2
gene-enrichment	1
hardness	1
faq	1
pileup	1
genome-browser	1
recombination	1
gr-aligner	1
maqgene	1
standard	1
eagleview	1
transcript	1
shortread	1
java	1
misassembly	1
blast	1
poster	1
broad-institute	1
beadarray	1
qsra	1
kautz-zeckendorf	1
breakdancer	1
pooled	1
meeting	1
hash	1
patman	1
multiplex	1
permutation	1
website	1
imputation	1
asssembly	1
samtools	1
casava	1
supplementary-information	1
personal-genomics	1
gamma-distribution	1
survival	1
rearrangement	1
bank	1
ruby	1
junction	1
bibliography	1
social	1
analysis	1
reas	1
conference	1
msa	1
maqview	1
rna-mate	1
bound	1
hpc	1
provenance	1
atlas-snp	1
pet	1
mask	1
tophat	1
tileqc	1
snplogic	1
shoremap	1
ab-initio	1
greed	1
mrna	1
tandem-repeat-finder	1
transcription	1
mapview	1
ssaha_pileup	1
string-scanning	1
boyer-moore	1
matlab	1
errors	1
exon-capture	1
mumrescuelite	1
array	1
dnptrapper	1
seqan	1
rap	1
promoter	1
exon	1
k-means	1
compressed-suffix-array	1
socs	1
hmm	1
ncbi	1
carnivore	1
asymptotic	1
archive	1
panda	1
bachmann-landau	1
cluster	1
windowmasker	1
genetic_association_studies	1
allele	1
firefox	1
minisatellites	1
mendeley	1
ebi	1
genotype	1
difference	1
varscan	1
novosnp3	1
nimblegen	1
tagdust	1
qpalma	1
semantic-web	1
stat5a	1
repeatmodeler	1
primer	1
alphabet	1
snp-o-matic	1
local	1
rna	1
gigassembler	1
tigera	1
insulin	1
disorder	1
mom	1
datamining	1
inference	1
exonerate	1
hcdiff	1
classification	1
hawkeye	1
repeatfinder	1
forage	1
pindel	1
order	1
editor	1
string	1
flx	1
gap	1
palindromes	1
haplobrowser	1
yh	1
swap454	1
plugin	1
autofinish	1
f-seq	1
snpinfo	1
framework	1
gs-20	1
tview	1
variants	1
laboratory	1
microrazers	1
subquadratic	1
mrfast	1
shrimp	1
pedigree	1
ngsview	1
ucsc	1
target-region	1
arachne2	1
polyfreq	1
pemer	1
hirschberg	1
factor-oracle	1
toolkit	1
pruning	1
leonardo	1
wiki	1
piqa	1
unofficial	1
drosophila	1
ungapped	1
dynamic-programming	1
tile	1
sff_extract	1
toronto-2008	1
semantic	1
pachter	1
smith-waterman	1
population	1
storage	1
myexperiment	1
heatmap	1
bwt-sw	1
genome-project	1
findpeaks	1
repeat	1
hunt-szymanski	1
mvf	1
iphone	1
bustard	1
transcriptomics	1
trbase	1
semi-global	1
gnumap	1
path	1
oslay	1
bfast	1
euler-sr	1
yoruba	1
galign	1
set	1
diversity	1
translocation	1
links	1
viewing	1
cloudburst	1
reads	1
cabog	1
programming	1
jbrowse	1
mutation-rate	1
fm-kz	1
sensitivity	1
biomart	1
mutations	1
blat	1
gapped-alignment	1
connected-component	1
seqmonk	1
phusion	1
protocol	1
breakpoint	1
mreps	1
piler	1
mechanism	1
barcoding	1
breakpoints	1
gsmapper	1
element	1
transposable-emenets	1
computer-science	1
false-positive	1
lasergene	1
quantisnp	1
avid	1
somatic-mutation	1
sircah	1
mailing-list	1
complexity	1
lectures	1
lookseq	1
prediction	1
eland	1
swift	1
pyro-align	1
velvet	1
forum	1
in-silico	1
guide	1
finite-automaton	1
suffix-stree	1
papers	1
soapdenovo	1
slider	1

n00c's snp-calling [30 articles] Export Sort

n00c's tags