n00c's watchlist [more than 800 articles] Export

Recent papers matching n00c's watchlist criteria

	From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. [My Copy] BMC bioinformatics, Vol. 10 Suppl 8, No. Suppl 8. (2009), S6. by Anna Bauer-Mehren, Laura I. Furlong, Michael Rautschka, Ferran Sanz posted to snp pathway by guhjy on 2009-11-28 05:56:46 as along with 3 people ptrobajo dullhunk daforerog
	Polymorphisms of the protein kinase C-beta gene (PRKCB1) accelerate kidney disease in type 2 diabetes without overt proteinuria. [My Copy] Diabetes care, Vol. 29, No. 4. (April 2006), pp. 864-868. by Shin-ichi Araki, Masakazu Haneda, Toshiro Sugimoto, et al.Motohide Isono, Keiji Isshiki, Atsunori Kashiwagi, Daisuke Koya posted to snp pkc dn by guhjy on 2009-11-28 05:18:49 as
	De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley [My Copy] BMC Genomics, Vol. 10, No. 1. (20 November 2009), 547. by Burkhard Steuernagel, Stefan Taudien, Heidrun Gundlach, et al.Michael Seidel, Ruvini Ariyadasa, Daniela Schulte, Andreas Petzold, Marius Felder, Andreas Graner, Uwe Scholz, Klaus Mayer, Matthias Platzer, Nils Stein posted to bac-pooling-design 454 by orzenil on 2009-11-28 01:46:36 as along with 1 person druvus
	High-resolution nucleosome mapping reveals transcription-dependent promoter packaging [My Copy] Genome Research (21 October 2009) by Assaf Weiner, Amanda Hughes, Moran Yassour, Oliver J. Rando, Nir Friedman posted to nucleosome ngs by natstreet on 2009-11-26 16:00:42 as along with 2 people and 1 group sebastien_vigneau idonaldson Epigenetics
	A Systematic Strategy for the Discovery of Candidate Genes Responsible for Phenotypic Variation [My Copy] Cardiovascular Genomics, Vol. 573 (2009), pp. 329-345. by Paul Fisher, Harry Noyes, Stephen Kemp, Robert Stevens, Andrew Brass posted to snp book by guhjy on 2009-11-26 15:22:01 as along with 2 people fisherp dullhunk
	Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species. [My Copy] BMC genomics, Vol. 10, No. 1. (24 November 2009), 555. by Diana Bellin, Alberto Ferrarini, Antonio Chimento, et al.Olaf Kaiser, Natasha Levenkova, Pascal Bouffard, Massimo Delledonne posted to rna-seq by GeeSharpMinor on 2009-11-26 15:15:03 as along with 2 people torfinnnome druvus
	De novo sequencing of plant genomes using second-generation technologies [My Copy] Brief Bioinform, Vol. 10, No. 6. (1 November 2009), pp. 609-618. by Michael Imelfort, David Edwards posted to short-reads assembly by dakelley on 2009-11-24 22:47:44 as along with 6 people and 1 group jforment druvus bedo Jporci TRHvidsten davidmam Bioinformatics Core Service
	The B73 Maize Genome: Complexity, Diversity, and Dynamics [My Copy] Science, Vol. 326, No. 5956. (20 November 2009), pp. 1112-1115. by Patrick S. Schnable, Doreen Ware, Robert S. Fulton, et al.Joshua C. Stein, Fusheng Wei, Shiran Pasternak, Chengzhi Liang, Jianwei Zhang, Lucinda Fulton, Tina A. Graves, Patrick Minx, Amy D. Reily, Laura Courtney, Scott S. Kruchowski, Chad Tomlinson, Cindy Strong, Kim Delehaunty, Catrina Fronick, Bill Courtney, Susan M. Rock, Eddie Belter, Feiyu Du, Kyung Kim, Rachel M. Abbott, Marc Cotton, Andy Levy, Pamela Marchetto, Kerri Ochoa, Stephanie M. Jackson, Barbara Gillam, Weizu Chen, Le Yan, Jamey Higginbotham, Marco Cardenas, Jason Waligorski, Elizabeth Applebaum, Lindsey Phelps, Jason Falcone, Krishna Kanchi, Thynn Thane, Adam Scimone, Nay Thane, Jessica Henke, Tom Wang, Jessica Ruppert, Neha Shah, Kelsi Rotter, Jennifer Hodges, Elizabeth Ingenthron, Matt Cordes, Sara Kohlberg, Jennifer Sgro, Brandon Delgado, Kelly Mead, Asif Chinwalla, Shawn Leonard, Kevin Crouse, Kristi Collura, Dave Kudrna, Jennifer Currie, Ruifeng He, Angelina Angelova, Shanmugam Rajasekar, Teri Mueller, Rene Lomeli, Gabriel Scara, Ara Ko, Krista Delaney, Marina Wissotski, Georgina Lopez, David Campos, Michele Braidotti, Elizabeth Ashley, Wolfgang Golser, HyeRan Kim, Seunghee Lee, Jinke Lin, Zeljko Dujmic, Woojin Kim, Jayson Talag, Andrea Zuccolo, Chuanzhu Fan, Aswathy Sebastian, Melissa Kramer, Lori Spiegel, Lidia Nascimento, Theresa Zutavern, Beth Miller, Claude Ambroise, Stephanie Muller, Will Spooner, Apurva Narechania, Liya Ren, Sharon Wei, Sunita Kumari, Ben Faga, Michael J. Levy, Linda McMahan, Peter Van Buren, Matthew W. Vaughn, Kai Ying, Cheng-Ting Yeh, Scott J. Emrich, Yi Jia, Ananth Kalyanaraman, An-Ping Hsia, W. Brad Barbazuk, Regina S. Baucom, Thomas P. Brutnell, Nicholas C. Carpita, Cristian Chaparro, Jer-Ming Chia, Jean-Marc Deragon, James C. Estill, Yan Fu, Jeffrey A. Jeddeloh, Yujun Han, Hyeran Lee, Pinghua Li, Damon R. Lisch, Sanzhen Liu, Zhijie Liu, Dawn H. Nagel, Maureen C. McCann, Phillip SanMiguel, Alan M. Myers, Dan Nettleton, John Nguyen, Bryan W. Penning, Lalit Ponnala, Kevin L. Schneider, David C. Schwartz, Anupma Sharma, Carol Soderlund, Nathan M. Springer, Qi Sun, Hao Wang, Michael Waterman, Richard Westerman, Thomas K. Wolfgruber, Lixing Yang, Yeisoo Yu, Lifang Zhang, Shiguo Zhou, Qihui Zhu, Jeffrey L. Bennetzen, R. Kelly Dawe, Jiming Jiang, Ning Jiang, Gernot G. Presting, Susan R. Wessler, Srinivas Aluru, Robert A. Martienssen, Sandra W. Clifton, W. Richard McCombie, Rod A. Wing, Richard K. Wilson posted to ngs genome-assembly genome by natstreet on 2009-11-24 05:53:05 as along with 5 people toszko barneb druvus maren operon
	Primer: Sequencing--the next generation. [My Copy] Nature methods, Vol. 5, No. 1. (January 2008) by Nicole Rusk, Veronique Kiermer posted to thesis ngs by manduca on 2009-11-24 03:57:56 as along with 2 people guhjy dchughes
	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2613-2614. by Takehiro Hashimoto, Michiel J. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner posted to software ngs by orzenil on 2009-11-23 21:41:15 as along with 4 people and 1 group guhjy mkiyer natstreet druvus Chinnaiyan Lab
	The genome of the cucumber, Cucumis sativus L. [My Copy] Nature Genetics, Vol. advance online publication (01 November 2009) by Sanwen Huang, Ruiqiang Li, Zhonghua Zhang, et al.Li Li, Xingfang Gu, Wei Fan, William J. Lucas, Xiaowu Wang, Bingyan Xie, Peixiang Ni, Yuanyuan Ren, Hongmei Zhu, Jun Li, Kui Lin, Weiwei Jin, Zhangjun Fei, Guangcun Li, Jack Staub, Andrzej Kilian, Edwin A. G. van der Vossen, Yang Wu, Jie Guo, Jun He, Zhiqi Jia, Yi Ren, Geng Tian, Yao Lu, Jue Ruan, Wubin Qian, Mingwei Wang, Quanfei Huang, Bo Li, Zhaoling Xuan, Jianjun Cao, Asan, Zhigang Wu, Juanbin Zhang, Qingle Cai, Yinqi Bai, Bowen Zhao, Yonghua Han, Ying Li, Xuefeng Li, Shenhao Wang, Qiuxiang Shi, Shiqiang Liu, Won K. Cho, Jae-Yean Kim, Yong Xu, Katarzyna Heller-Uszynska, Han Miao, Zhouchao Cheng, Shengping Zhang, Jian Wu, Yuhong Yang, Houxiang Kang, Man Li, Huiqing Liang, Xiaoli Ren, Zhongbin Shi, Ming Wen, Min Jian, Hailong Yang, Guojie Zhang, Zhentao Yang, Rui Chen, Shifang Liu, Jianwen Li, Lijia Ma, Hui Liu, Yan Zhou, Jing Zhao, Xiaodong Fang, Guoqing Li, Lin Fang, Yingrui Li, Dongyuan Liu, Hongkun Zheng, Yong Zhang, Nan Qin, Zhuo Li, Guohua Yang, Shuang Yang, Lars Bolund, Karsten Kristiansen, Hancheng Zheng, Shaochuan Li, Xiuqing Zhang, Huanming Yang, Jian Wang, Rifei Sun, Baoxi Zhang, Shuzhi Jiang, Jun Wang, Yongchen Du, Songgang Li posted to ngs genome by manduca on 2009-11-23 19:41:49 as along with 4 people and 1 group ppgardne kiekyon druvus natstreet Journal picks
	Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 6. (7 June 2009), pp. 1077-1083. by Danielle V. Irvine, Derek B. Goto, Matthew W. Vaughn, et al.Yukinobu Nakaseko, W. Richard McCombie, Mitsuhiro Yanagida, Rob Martienssen posted to thesis ngs genome by manduca on 2009-11-23 19:39:13 as
	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to ngs fungi assembly by orzenil on 2009-11-23 18:50:55 as along with 10 people and 2 groups GustavoLacerda sotacam gillianturgeon natstreet druvus jamselem sujaikumar kiekyon ppgardne stajich Journal picks Mycology
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to short-reads rna-seq chip-seq by urgi on 2009-11-23 17:50:23 as along with 23 people and 2 groups Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Virtual terminator nucleotides for next-generation DNA sequencing [My Copy] Nature Methods, Vol. 6, No. 8. (20 July 2009), pp. 593-595. by Jayson Bowers, Judith Mitchell, Eric Beer, et al.Philip R. Buzby, Marie Causey, J. William Efcavitch, Mirna Jarosz, Edyta Krzymanska-Olejnik, Li Kung, Doron Lipson, Geoffrey M. Lowman, Subramanian Marappan, Peter McInerney, Adam Platt, Atanu Roy, Suhaib M. Siddiqi, Kathleen Steinmann, John F. Thompson posted to thesis ngs by manduca on 2009-11-23 05:08:43 as along with 2 people guhjy jbhiatt
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to assembly by dakelley on 2009-11-23 05:04:38 as along with 13 people and 1 group JonD qayub sandfire daforerog Peiyong chvlyl JamesBarger natstreet heliopais rwst orzenil zufar frohike Journal picks
	A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. [My Copy] Nucleic acids research, Vol. 35, No. 19. (2007) by Poornima Parameswaran, Roxana Jalili, Li Tao, et al.Shadi Shokralla, Baback Gharizadeh, Mostafa Ronaghi, Andrew Z. Fire posted to thesis rna-seq barcode by manduca on 2009-11-23 04:24:39 as along with 8 people and 1 group heliopais stubrown jlgreen mikheyev jbhiatt pdexheimer alexisfjdufresne slevy03 iSEEM
	Relative power and sample size analysis on gene expression profiling data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 439. by M. van Iterson, P. A. 't Hoen, P. Pedotti, et al.G. J. Hooiveld, J. T. den Dunnen, G. J. van Ommen, J. M. Boer, R. X. Menezes posted to thesis rna-seq by manduca on 2009-11-23 02:27:32 as along with 6 people and 1 group dswan Stew fenghezi mkiyer rdiaz barriot Bioinformatics - CRUK
	Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine [My Copy] Vol. 85, No. 2. (14 August 2009), pp. 142-154. by Tracy Tucker, Marco Marra, Jan M. Friedman posted to solexa sequencing sanger review 454 by chriscole on 2009-11-22 10:39:20 as along with 1 person daforerog
	Single Nucleotide Polymorphisms [My Copy] posted to snp book by guhjy on 2009-11-21 13:59:39 as
	Identifiability of isoform deconvolution from junction arrays and RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3056-3059. by David Hiller, Hui Jiang, Weihong Xu, Wing H. Wong posted to rna-seq next_generation_sequencing bioinformatics by AlexBateman to the group Journal picks on 2009-11-19 12:51:56 as along with 6 people and 1 group jwfoley djkt hzoltan cajunsushi ghattem GeeSharpMinor SIMR bioinformatics
	Exome sequencing identifies the cause of a mendelian disorder [My Copy] Nature Genetics, Vol. advance online publication (13 November 2009) by Sarah B. Ng, Kati J. Buckingham, Choli Lee, et al.Abigail W. Bigham, Holly K. Tabor, Karin M. Dent, Chad D. Huff, Paul T. Shannon, Ethylin W. Jabs, Deborah A. Nickerson, Jay Shendure, Michael J. Bamshad posted to ngs by pst on 2009-11-18 19:54:24 as along with 5 people cajunsushi seb1 daforerog Peiyong psique
	W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3191-3193. by Victor X. Jin, Jeff Apostolos, Naga S. Nagisetty, Peggy J. Farnham posted to tool ngs motif-discovery by idonaldson on 2009-11-18 09:50:10 as along with 3 people farhat nklee maximilianh
	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease. [My Copy] JAMA : the journal of the American Medical Association, Vol. 302, No. 1. (1 July 2009), pp. 37-48. by Paul Elliott, John C. Chambers, Weihua Zhang, et al.Robert Clarke, Jemma C. Hopewell, John F. Peden, Jeanette Erdmann, Peter Braund, James C. Engert, Derrick Bennett, Lachlan Coin, Deborah Ashby, Ioanna Tzoulaki, Ian J. Brown, Shahrul Mt-Isa, Mark I. McCarthy, Leena Peltonen, Nelson B. Freimer, Martin Farrall, Aimo Ruokonen, Anders Hamsten, Noha Lim, Philippe Froguel, Dawn M. Waterworth, Peter Vollenweider, Gerard Waeber, Marjo-Riitta R. Jarvelin, Vincent Mooser, James Scott, Alistair S. Hall, Heribert Schunkert, Sonia S. Anand, Rory Collins, Nilesh J. Samani, Hugh Watkins, Jaspal S. Kooner posted to snp cv crp by guhjy on 2009-11-18 02:33:46 as along with 3 people Terkko booker djmonstermo
	Genome-wide mapping of alternative splicing in Arabidopsis thaliana [My Copy] Genome Research (26 October 2009) by Sergei A. Filichkin, Henry D. Priest, Scott A. Givan, et al.Rongkun Shen, Douglas W. Bryant, Samuel E. Fox, Weng-Keen Wong, Todd C. Mockler posted to rust rna-seq nmd arabidopsis by cajunsushi on 2009-11-17 02:29:39 as along with 4 people bpcusack kshameer GeeSharpMinor natstreet
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted to rna-seq data_analysis by jwfoley on 2009-11-13 17:00:21 as along with 16 people and 2 groups hzoltan heliopais stubrown GustavoLacerda woodson8 ThomasDOtto stajich guhjy ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor Mycology SIMR bioinformatics
	Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L) [My Copy] Genome Biology, Vol. 10, No. 11. (4 November 2009), R122. by Mingxiong Pang, Andrew Woodward, Vikram Agarwal, et al.Xueying Guan, Misook Ha, Vanitharani Ramachandran, Xuemei Chen, Barbara Triplett, David Stelly, Z. Jeffrey Chen posted to small_interfering_rnas sirna sequencing ngs illumina by davidmam on 2009-11-13 10:15:20 as along with 2 people natstreet samgj
	Direct multiplexed measurement of gene expression with color-coded probe pairs. [My Copy] Nature biotechnology, Vol. 26, No. 3. (17 March 2008), pp. 317-325. by Gary K. Geiss, Roger E. Bumgarner, Brian Birditt, et al.Timothy Dahl, Naeem Dowidar, Dwayne L. Dunaway, H. Perry Fell, Sean Ferree, Renee D. George, Tammy Grogan, Jeffrey J. James, Malini Maysuria, Jeffrey D. Mitton, Paola Oliveri, Jennifer L. Osborn, Tao Peng, Amber L. Ratcliffe, Philippa J. Webster, Eric H. Davidson, Leroy Hood, Krassen Dimitrov posted to rna-seq by manduca on 2009-11-12 04:43:57 as along with 9 people and 2 groups pmalkus robert guhjy austin vplagnol GeeSharpMinor shikin psique jfr GeneGo parkinson's disease references
	Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing [My Copy] The ISME Journal, Vol. 3, No. 7. (02 April 2009), pp. 792-796. by Ben Temperton, Dawn Field, Anna Oliver, et al.Bela Tiwari, Martin Muhling, Ian Joint, Jack A. Gilbert posted to rna-seq by manduca on 2009-11-12 04:42:50 as along with 3 people seb1 Thaverkamp jmeppley
	Improved protocols for the illumina genome analyzer sequencing system. [My Copy] Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 18 (July 2009) by Michael A. Quail, Harold Swerdlow, Daniel J. Turner posted to rna-seq by manduca on 2009-11-12 04:42:05 as along with 2 people and 1 group rschulz katholt Journal picks
	Allele-specific expression assays using Solexa. [My Copy] BMC genomics, Vol. 10, No. 1. (9 September 2009), 422. by Bradley J. Main, Ryan D. Bickel, Lauren M. McIntyre, Rita M. Graze, Peter P. Calabrese, Sergey V. Nuzhdin posted to rna-seq by manduca on 2009-11-12 04:41:53 as along with 2 people sebastien_vigneau natstreet
	PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. [My Copy] Applied and environmental microbiology, Vol. 71, No. 12. (December 2005), pp. 8966-8969. by Silvia G. Acinas, Ramahi Sarma-Rupavtarm, Vanja Klepac-Ceraj, Martin F. Polz posted to rna-seq by manduca on 2009-11-12 04:32:37 as along with 2 people vrich Olaf_Ilzins
	Transcript quantification with RNA-Seq data [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 13. (19 October 2009), P5. by Regina Bohnert, Jonas Behr, Gunnar Ratsch posted to rna-seq data_analysis by jwfoley on 2009-11-12 01:38:04 as along with 3 people hzoltan inesdesantiago heliopais
	High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity [My Copy] BMC Genetics, Vol. 10, No. 1. (05 October 2009), 63. by Weiyin Zhou, Margaret Calciano, Heather Jordan, et al.Michael Brenner, Seth Johnson, Darong Wu, Lin Lei, Diego Pallares, Pascale Beurdeley, Fabien Rouet, Pritmohinder Gill, Laurent Bracco, Cyril Soucaille, Richard Einstein posted to rna-seq by GeeSharpMinor on 2009-11-11 21:15:53 as along with 1 person torfinnnome
	Common Variants of Inflammatory Cytokine Genes Are Associated with Risk of Nephropathy in Type 2 Diabetes among Asian Indians [My Copy] PLoS ONE, Vol. 4, No. 4. (9 April 2009), e5168. by Tarunveer S. Ahluwalia, Madhu Khullar, Monica Ahuja, et al.Harbir S. Kohli, Anil Bhansali, Viswanathan Mohan, Radha Venkatesan, Taranjit S. Rai, Kamal Sud, Pawan K. Singal posted to tnf snp dn cytokine by guhjy on 2009-11-11 04:19:08 as
	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia. [My Copy] Nature genetics, Vol. 41, No. 10. (06 October 2009), pp. 1110-1115. by Johan Rung, Stéphane Cauchi, Anders Albrechtsen, et al.Lishuang Shen, Ghislain Rocheleau, Christine Cavalcanti-Proença, François Bacot, Beverley Balkau, Alexandre Belisle, Knut Borch-Johnsen, Guillaume Charpentier, Christian Dina, Emmanuelle Durand, Paul Elliott, Samy Hadjadj, Marjo-Riitta R. Järvelin, Jaana Laitinen, Torsten Lauritzen, Michel Marre, Alexander Mazur, David Meyre, Alexandre Montpetit, Charlotta Pisinger, Barry Posner, Pernille Poulsen, Anneli Pouta, Marc Prentki, Rasmus Ribel-Madsen, Aimo Ruokonen, Anelli Sandbaek, David Serre, Jean Tichet, Martine Vaxillaire, Jørgen F. Wojtaszewski, Allan Vaag, Torben Hansen, Constantin Polychronakos, Oluf Pedersen, Philippe Froguel, Robert Sladek posted to snp irs1 irs dm by guhjy on 2009-11-09 05:16:13 as along with 1 person sf11
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted to sequencing rna-seq by inesdesantiago on 2009-11-06 16:47:26 as along with 16 people hzoltan jfr heliopais manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes [My Copy] Nucl. Acids Res. (5 November 2009), gkp883. by Aaron R. Jex, Ross S. Hall, Littlewood, Robin B. Gasser posted to rna-seq by juokcho on 2009-11-06 11:53:05 as
	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D868-872. by Helen Parkinson, Misha Kapushesky, Nikolay Kolesnikov, et al.Gabriella Rustici, Mohammad Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Z. Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna G. Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma posted to rna-seq repository microarray gene-expression functional-genomics database atlas by bertelsen on 2009-11-05 22:40:22 as along with 9 people ptrobajo daforerog guhjy samfromklamart vkwn Borelli jfr kittipat abizar
	Next Generation Sequencing in Nonmodel Organisms: Has the Future Arrived? [My Copy] The Journal of heredity (2 November 2009) by Mattias L. Johansson posted to rna-seq by GeeSharpMinor on 2009-11-05 17:09:09 as
	Whole genome transcriptome analysis. [My Copy] RNA biology, Vol. 6, No. 2. (n 2009), pp. 107-112. by Alistair R. Forrest, Piero Carninci posted to rna-seq by GeeSharpMinor on 2009-11-05 17:08:59 as
	BARCRAWL and BARTAB: Software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 362. by Daniel Frank posted to ngs barcode by natstreet on 2009-11-04 07:30:35 as along with 4 people and 1 group druvus MarkFiers ppgardne heliopais Journal picks
	Identification of suitable normalizing genes for quantitative real-time RT-PCR analysis of gene expression in fetal mouse gonads. [My Copy] Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation, Vol. 3, No. 4. (2009), pp. 194-204. by T. Svingen, C. M. Spiller, K. Kashimada, V. R. Harley, P. Koopman posted to sex rna-seq mouse data_analysis by jwfoley on 2009-11-04 02:35:14 as
	Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 218-223. by Nicholas T. Ingolia, Sina Ghaemmaghami, John R. S. Newman, Jonathan S. Weissman posted to rna-seq by jwfoley on 2009-11-04 02:25:39 as along with 18 people and 3 groups hzoltan yyfwuhan gbloeb guhjy dpollard fenghezi gangcai idonaldson coela fpattyn jbhiatt kshundyak absterga myzhang bertelsen VGreiff provero kinestetika RockmanLab NYU Journal Review microbiology_nijmegen
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to rna-seq by jwfoley on 2009-11-04 02:24:51 as along with 8 people and 1 group tprpip guhjy poschm jfr jasontsai GustavoLacerda Cortel stajich Mycology
	Flow cytometry for enrichment and titration in massively parallel DNA sequencing. [My Copy] Nucleic acids research (20 March 2009) by Julia Sandberg, Patrik L L. Ståhl, Afshin Ahmadian, Magnus K K. Bjursell, Joakim Lundeberg posted to titration facs empcr 454 by mfgreen on 2009-11-03 20:47:40 as
	Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20179-20184. by Hairi Li, Michael T. Lovci, Young-Soo Kwon, Michael G. Rosenfeld, Xiang-Dong Fu, Gene W. Yeo posted to rna-seq data_analysis by jwfoley on 2009-11-03 19:06:08 as along with 3 people guhjy xingxu abizar
	Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts. [My Copy] Genome biology, Vol. 10, No. 10. (16 October 2009), R115. by Joshua Z. Levin, Michael F. Berger, Xian Adiconis, et al.Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A. Garraway, Andreas Gnirke posted to rna-seq cancer by jwfoley on 2009-11-03 18:52:52 as along with 2 people and 1 group pst torfinnnome Journal picks
	Cancer genome sequencing: a review [My Copy] Hum. Mol. Genet., Vol. 18, No. R2. (15 October 2009), pp. R163-168. by Elaine R. Mardis, Richard K. Wilson posted to short-reads review cancer by dakelley on 2009-11-02 17:13:02 as along with 2 people desany jmanning2k
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to whole-genome-seq transcriptome somatic_mutations rnaseq nextgen mutations cancer by stubrown on 2009-11-02 14:16:53 as along with 13 people and 2 groups misonneh pst jwfoley chvlyl giovenko frohike brianb Zephyrus jsuchit mkiyer torfinnnome merpublic djkt Chinnaiyan Lab Journal picks

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short-read	92
algorithm	83
software	64
map	50
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454	38
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