ViTraM: visualization of transcriptional modules. Export

@article{citeulike:5094141, abstract = {MOTIVATION: We developed ViTraM, a tool that allows visualizing overlapping transcriptional modules in an intuitive way. By visualizing not only the genes and the experiments in which the genes are co-expressed, but also additional properties of the modules such as the regulators and regulatory motifs that are responsible for the observed co-expression, ViTraM can assist in the biological analysis and interpretation of the output of module detection tools. AVAILABILITY: The ViTraM software is platform-independent. The software and supplementary material are available at: http://homes.esat.kuleuven.be/\~{}kmarchal/ViTraM/Index.html}, author = {Sun, Hong and Lemmens, Karen and Van den Bulcke, Tim and Engelen, Kristof and De Moor, Bart and Marchal, Kathleen}, citeulike-article-id = {5094141}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp400}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/18/2450}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19587224}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19587224}, day = {15}, doi = {10.1093/bioinformatics/btp400}, issn = {1460-2059}, journal = {Bioinformatics (Oxford, England)}, keywords = {module, network, software}, month = {September}, number = {18}, pages = {2450--2451}, posted-at = {2009-09-01 08:22:12}, priority = {2}, title = {ViTraM: visualization of transcriptional modules.}, url = {http://dx.doi.org/10.1093/bioinformatics/btp400}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:5094141 L3 - citeulike-article-id:5094141 N2 - MOTIVATION: We developed ViTraM, a tool that allows visualizing overlapping transcriptional modules in an intuitive way. By visualizing not only the genes and the experiments in which the genes are co-expressed, but also additional properties of the modules such as the regulators and regulatory motifs that are responsible for the observed co-expression, ViTraM can assist in the biological analysis and interpretation of the output of module detection tools. AVAILABILITY: The ViTraM software is platform-independent. The software and supplementary material are available at: http://homes.esat.kuleuven.be/~kmarchal/ViTraM/Index.html IS - 18 JF - Bioinformatics (Oxford, England) SN - 1460-2059 EP - 2451 TI - ViTraM: visualization of transcriptional modules. VL - 25 SP - 2450 KW - module KW - network KW - software AU - Sun, Hong AU - Lemmens, Karen AU - Van den Bulcke, Tim AU - Engelen, Kristof AU - De Moor, Bart AU - Marchal, Kathleen PY - 2009/09/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp400 ER -