natstreet's alignment [12 articles] Export

Recent papers added to natstreet's library classified by the tag alignment. You can also see everyone's alignment.

	EMBOSS: The European Molecular Biology Open Software Suite [My Copy] Trends in Genetics, Vol. 16, No. 6. (1 June 2000), pp. 276-277. by P. Rice posted to software alignment by natstreet on 2009-11-05 10:36:51 as along with 2 people Cortel gennttll
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to ngs mapping alignment by natstreet on 2009-11-04 07:31:37 as along with 13 people and 1 group pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai seb1 druvus chvlyl GeeSharpMinor n00c venancio desany Orengo Group Journal Picks
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to paired-end ngs mapping alignment by natstreet on 2009-10-26 09:04:57 as along with 26 people and 6 groups hzoltan agbiotec torfinnnome cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	ABWGAT: Anchor Based Whole Genome Analysis Tool. [My Copy] Bioinformatics (14 October 2009), btp587. by Sarbashis Das, Anchal Vishnoi, Alok Bhattacharya posted to whole-genome-alignment alignment by natstreet on 2009-10-19 08:05:49 as along with 1 person druvus
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to alignment by natstreet on 2009-10-02 10:13:04 as along with 18 people and 1 group seb1 rdowell timflutre n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin AlexBateman djkt druvus Journal picks
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted to ngs comparative-genetics assembly alignment by natstreet on 2009-09-18 10:15:28 as along with 10 people darian maren megraw djkt fstrozzi jamselem justinhjohnson torfinnnome reyez druvus
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to ngs alignment by natstreet on 2009-09-12 05:49:29 as along with 19 people and 4 groups cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Computation and Analysis of Genomic Multi-Sequence Alignments [My Copy] Annual Review of Genomics and Human Genetics, Vol. 8, No. 1. (9 May 2007), pp. 193-213. by Mathieu Blanchette posted to comparative-genetics alignment by natstreet on 2009-09-01 08:23:16 as along with 7 people and 1 group druvus treangen dpollard lilou nklee maximilianh aprasad EisenLab
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted to alignment ngs by natstreet on 2009-08-03 18:32:06 as along with 10 people and 2 groups fstrozzi manduca djkt rdiaz sjcockell torfinnnome walshtp nuin druvus ollieredfernwork Journal picks Orengo Group Journal Picks
	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2613-2614. by Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner posted to ngs mapping alignment by natstreet on 2009-07-22 10:13:07 as along with 3 people and 1 group guhjy mkiyer druvus Chinnaiyan Lab
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to software ngs gbrowse format-conversion alignment by natstreet on 2009-06-09 19:02:32 as along with 27 people and 2 groups cthachuk hzoltan seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat AlexBateman chrisamiller nuin n00c sandfire druvus BergmanLab Journal picks
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to splice-variant ngs alignment by natstreet on 2009-02-28 22:30:12 as along with 12 people and 1 group GustavoLacerda darshan n00c druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics

Note: You may cite this page as: http://www.citeulike.org/user/natstreet/tag/alignment

ngs	63
leaf-shape	40
mirna	39
software	32
poplar	28
transcriptomics	15
db	14
de-novo	14
alignment	12
snp	12
network	11
r	10
repeat	10
assembly	8
qtl	8
srna	8
abiotic-stress	7
association-mapping	7
gwa	7
motif	7
rnaseq	7
comparative-genomics	6
genomics	6
herbivory	6
mapping	6
rt-pcr	6
sex	6
stress	6
allele-specific	5
aspen	5
association	5
gene-family	5
gene-prediction	5
methylation	5
ontology	5
paired-end	5
biotic-stress	4
drought	4
endophyte	4
genome-browser	4
natural-variation	4
review	4
synteny	4
aba	3
amirna	3
annotation	3
barcode	3
chromatin	3
dna-extraction	3
evolution	3
gene-expression	3
indel	3
leaf-development	3
meta-analysis	3
mod	3
ncrna	3
promoter	3
qpcr	3
serration	3
alternative-splicing	2
chemical-defense	2
climate	2
cnv	2
comparative-genetics	2
co-regulation	2
cross-species	2
development	2
differentiation	2
diversifying_selection	2
ectomycorrhizal_fungi	2
epigenetics	2
epiphyte	2
genome	2
genome-assembly	2
haplotype	2
heteroblasty	2
leaf-area	2
microarray	2
module	2
orthology	2
over-enrichment	2
phenotype	2
photosynthesis	2
polymorphism	2
pooled	2
proteomics	2
regulation	2
resequencing	2
rna-extraction	2
sirna	2
systems-biology	2
affy	1
analysis-method	1
apex	1
arf	1
assay	1
assisted-assembly	1
asymmetry	1
bioconductor	1
bioenergy	1
bioinformatics	1
biotic-stres	1
chemical-genetics	1
chipseq	1
cis-regulation	1
cis-variation	1
cnr	1
co-expression	1
combined-assembly	1
combined-profiling	1
community	1
conservation	1
degradome	1
dna-binding	1
duplication	1
elp	1
endoreduplication	1
epigenome	1
epigenomics	1
epistasis	1
eqtl	1
error-bars	1
est	1
format-conversion	1
gbrowse	1
gene-set	1
genetical-genomics	1
genome-rearrangement	1
go	1
graphs	1
gui	1
heterosis	1
hybrid	1
integrative-analysis	1
intergeneic	1
labwork	1
latitude	1
leaf-chemistry	1
leaf_primordium	1
linkage	1
meristem	1
metabolomics	1
motig	1
mutation	1
nbs-lrr	1
neofunctionalization	1
non-coding	1
nucleosome	1
omics	1
pathway	1
pca	1
phase-transistion	1
phenotypic_plasticity	1
phylogeny	1
physiognomy	1
pipeline	1
plasticity	1
polarity	1
polyploidy	1
population	1
regulon	1
ril	1
senescence	1
sequence-enrichment	1
shotgun	1
solid	1
splice-variant	1
strand-specific	1
subfunctionalization	1
swasp	1
transciptome	1
transponson	1
transposon	1
uv-b	1
variation	1
visualisation	1
volatiles	1
web-resource	1
whole-genome-alignment	1

natstreet's alignment [12 articles] Export

natstreet's tags