nedwards's peptide-identification-statistics [38 articles] Export Sort

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	Peptide Sequence Confidence in Accurate Mass and Time Analysis and Its Use in Complex Proteomics Experiments [My Copy] J. Proteome Res. (28 October 2008) by Damon May, Yan Liu, Wendy Law, et al.Matt Fitzgibbon, Hong Wang, Samir Hanash, Martin Mcintosh posted to high-accuracy mass-spectrometry peptide-identification peptide-identification-statistics proteomics by nedwards on 2008-11-06 17:16:28 as along with 2 people brianb neils
	Rapid and Accurate Peptide Identification from Tandem Mass Spectra [My Copy] J. Proteome Res. (28 May 2008) by Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. Maccoss, William S. Noble posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 17:12:48 as along with 2 people guhjy brianb
	Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches [My Copy] J. Proteome Res. (14 August 2008) by Wilfred H. Tang, Ignat V. Shilov, Sean L. Seymour posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 16:58:55 as along with 1 person brianb
	Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 5. (1 May 2008), pp. 962-970. by M. Brosch, S. Swamy, T. Hubbard, J. Choudhary posted to mascot peptide-identification peptide-identification-statistics proteomics tandem tandem-mass-spectrometry by nedwards on 2008-10-03 16:56:18 as along with 4 people timhubbard mdharsee olberd brianb
	Open Mass Spectrometry Search Algorithm [My Copy] J. Proteome Res., Vol. 3, No. 5. (11 October 2004), pp. 958-964. by L. Y. Geer, S. P. Markey, J. A. Kowalak, et al.L. Wagner, M. Xu, D. M. Maynard, X. Yang, W. Shi, S. H. Bryant posted to omssa peptide-identification peptide-identification-statistics proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2008-09-29 01:37:41 as along with 1 person robert
	Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications [My Copy] J. Proteome Res. (19 April 2008) by Xiuxia Du, Feng Yang, Nathan P. Manes, et al.David L. Stenoien, Matthew E. Monroe, Joshua N. Adkins, David J. States, Samuel O. Purvine, Ii Camp, Richard D. Smith posted to peptide-identification-statistics phosphopeptide phosphorylation proteomics tandem-mass-spectrometry by nedwards on 2008-04-25 15:56:45 as along with 2 people neils brianb
	Calibrating E-values for MS2 database search methods [My Copy] Biology Direct, Vol. 2 (05 November 2007), 26. by Gelio Alves, Aleksey Y. Ogurtsov, Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as along with 1 person brianb
	Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics. [My Copy] J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265. by H. Choi, A. I. Nesvizhskii posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as along with 1 person guhjy
	Semi-supervised learning for peptide identification from shotgun proteomics datasets [My Copy] Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925. by Lukas Käll, Jesse D. Canterbury, Jason Weston, William S. Noble, Michael J. Maccoss posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as along with 2 people Yanno tmmurali
	HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models [My Copy] Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043. by Xue Wu, Chau-Wen Tseng, Nathan Edwards posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as along with 1 person guhjy
	Analysis and validation of proteomic data generated by tandem mass spectrometry [My Copy] Nat Meth, Vol. 4, No. 10. (October 2007), pp. 787-797. by Alexey Nesvizhskii, Olga Vitek, Ruedi Aebersold posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 16:03:29 as along with 4 people debasis robert guhjy fishtank
	ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer [My Copy] PROTEOMICS, Vol. 5, No. 16. (2005), pp. 4096-4106. by Ning Zhang, Xiao-Jun Li, Mingliang Ye, Sheng Pan, Benno Schwikowski, Ruedi Aebersold posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:39:40 as along with 1 person olberd
	Intensity-Based Statistical Scorer for Tandem Mass Spectrometry [My Copy] Anal. Chem., Vol. 75, No. 3. (1 February 2003), pp. 435-444. by M. Havilio, Y. Haddad, Z. Smilansky posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:37:53 as
	Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data. [My Copy] J Proteome Res, Vol. 4, No. 5. (t 2005), pp. 1687-1698. by W. R. Cannon, K. H. Jarman, B. J. Webb-Robertson, et al.D. J. Baxter, C. S. Oehmen, K. D. Jarman, A. Heredia-Langner, K. J. Auberry, G. A. Anderson posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:22:15 as
	High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics. [My Copy] Proteomics, Vol. 4, No. 7. (July 2004), pp. 1977-1984. by J. Colinge, A. Masselot, I. Cusin, et al.E. Mahé, A. Niknejad, G. Argoud-Puy, S. Reffas, N. Bederr, A. Gleizes, P. A. Rey, L. Bougueleret posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:46 as
	OLAV: towards high-throughput tandem mass spectrometry data identification. [My Copy] Proteomics, Vol. 3, No. 8. (August 2003), pp. 1454-1463. by J. Colinge, A. Masselot, M. Giron, T. Dessingy, J. Magnin posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:22 as
	A Statistical Basis for Testing the Significance of Mass Spectrometric Protein Identification Results [My Copy] Anal. Chem., Vol. 72, No. 5. (1 March 2000), pp. 999-1005. by J. Eriksson, B. T. Chait, D. Fenyo posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:19:03 as
	ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data [My Copy] PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1406-1412. by Ning Zhang, Ruedi Aebersold, Benno Schwikowski posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:14:05 as along with 1 person robert
	A Hypergeometric Probability Model for Protein Identification and Validation Using Tandem Mass Spectral Data and Protein Sequence Databases [My Copy] Anal. Chem., Vol. 75, No. 15. (1 August 2003), pp. 3792-3798. by R. G. Sadygov, J. R. Yates posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:57:40 as
	Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy [My Copy] J. Proteome Res., Vol. 6, No. 1. (5 January 2007), pp. 392-398. by E. L. Huttlin, A. D. Hegeman, A. C. Harms, M. R. Sussman posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:51:56 as
	Artificial Neural Network Analysis for Evaluation of Peptide MS/MS Spectra in Proteomics [My Copy] Anal. Chem., Vol. 76, No. 6. (15 March 2004), pp. 1726-1732. by T. Baczek, A. Bucinski, A. R. Ivanov, R. Kaliszan posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-20 18:12:53 as
	Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search [My Copy] Anal. Chem., Vol. 74, No. 20. (15 October 2002), pp. 5383-5392. by A. Keller, A. I. Nesvizhskii, E. Kolker, R. Aebersold posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-19 18:47:39 as
	Comprehensive yeast proteome analysis using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-MS/MS [My Copy] PROTEOMICS, Vol. 7, No. 8. (2007), pp. 1178-1187. by Weijie Wang, Tong Guo, Tao Song, Cheng S. Lee, Brian M. Balgley posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:29:28 as along with 1 person brianb
	Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy [My Copy] Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1599-1608. by Brian M. Balgley, Tom Laudeman, Li Yang, Tao Song, Cheng S. Lee posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:17:07 as along with 2 people brianb robert
	Estimating the Statistical Significance of Peptide Identifications from Shotgun Proteomics Experiments [My Copy] J. Proteome Res., Vol. 6, No. 5. (4 May 2007), pp. 1758-1767. by R. E. Higgs, M. D. Knierman, A. Bonnerfreeman, L. M. Gelbert, S. T. Patil, J. E. Hale posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-04 18:56:09 as along with 1 person fishtank
	Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring. [My Copy] Anal Chem, Vol. 76, No. 8. (15 April 2004), pp. 2355-2366. by J. P. Dworzanski, A. P. Snyder, R. Chen, H. Zhang, D. Wishart, L. Li posted to microorganism-identification peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:29:45 as
	Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases. [My Copy] Anal Chem, Vol. 76, No. 6. (15 March 2004), pp. 1664-1671. by R. G. Sadygov, H. Liu, J. R. Yates posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:28:30 as along with 3 people kallberg fishtank nuin
	Qscore: an algorithm for evaluating SEQUEST database search results. [My Copy] J Am Soc Mass Spectrom, Vol. 13, No. 4. (April 2002), pp. 378-386. by R. E. Moore, M. K. Young, T. D. Lee posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:27:55 as along with 1 person kallberg
	Probability-based validation of protein identifications using a modified SEQUEST algorithm. [My Copy] Anal Chem, Vol. 74, No. 21. (1 November 2002), pp. 5593-5599. by M. J. MacCoss, C. C. Wu, J. R. Yates posted to peptide-identification peptide-identification-statistics peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:27:30 as along with 1 person kallberg
	A model for random sampling and estimation of relative protein abundance in shotgun proteomics. [My Copy] Anal Chem, Vol. 76, No. 14. (15 July 2004), pp. 4193-4201. by H. Liu, R. G. Sadygov, J. R. Yates posted to peptide-identification peptide-identification-statistics protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-08-20 17:35:14 as along with 2 people chemnerd1 kentsis
	Randomized sequence databases for tandem mass spectrometry peptide and protein identification. [My Copy] OMICS, Vol. 9, No. 4. (2005), pp. 364-379. by R. Higdon, J. M. Hogan, G. Van Belle, E. Kolker posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 17:39:36 as along with 1 person rabu
	The probability distribution for a random match between an experimental-theoretical spectral pair in tandem mass spectrometry. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 2. (April 2005), pp. 455-476. by T. Fridman, J. Razumovskaya, N. Verberkmoes, G. Hurst, V. Protopopescu, Y. Xu posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:28:32 as
	A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores [My Copy] Journal of Proteome Research, Vol. 2, No. 2. (1 April 2003), pp. 137-146. by D. C. Anderson, Weiqun Li, Donald G. Payan, William S. Noble posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 16:06:11 as along with 1 person stharward
	An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis [My Copy] PROTEOMICS, Vol. 5, No. 13. (2005), pp. 3475-3490. by Eugene A. Kapp, Frédéric Schütz, Lisa M. Connolly, et al.John A. Chakel, Jose E. Meza, Christine A. Miller, David Fenyo, Jimmy K. Eng, Joshua N. Adkins, Gilbert S. Omenn, Richard J. Simpson posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 15:41:15 as along with 1 person robert
	Open Mass Spectrometry Search Algorithm [My Copy] (1 Jun 2004) by Lewis Y. Geer, Sanford P. Markey, Jeffrey A. Kowalak, et al.Lukas Wagner, Ming Xu, Dawn M. Maynard, Xiaoyu Yang, Wenyao Shi, Stephen H. Bryant posted to omssa peptide-identification peptide-identification-statistics proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2007-08-08 15:37:29 as
	Improved classification of mass spectrometry database search results using newer machine learning approaches. [My Copy] Mol Cell Proteomics, Vol. 5, No. 3. (March 2006), pp. 497-509. by P. J. Ulintz, J. Zhu, Z. S. Qin, P. C. Andrews posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 15:17:26 as along with 1 person mass
	A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases. [My Copy] Anal Chem, Vol. 75, No. 15. (1 August 2003), pp. 3792-3798. by R. G. Sadygov, J. R. Yates posted to peptide-identification-statistics protein-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:00:03 as
	Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations [My Copy] Nature Methods, Vol. 2, No. 9. (23 August 2005), pp. 667-675. by Joshua E. Elias, Wilhelm Haas, Brendan K. Faherty, Steven P. Gygi posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 13:34:59 as along with 2 people robert csardas

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proteomics	327
tandem-mass-spectrometry	183
peptide-identification	143
mass-spectrometry	98
microorganism-identification	52
protein-quantitation	51
systems-biology	51
sequence-alignment	46
string-matching	40
peptide-identification-statistics	38
gapped-seeds	33
denovo-interpretation	30
n-terminal-peptides	28
genome-annotation	24
label-free	24
top-down	19
phosphorylation	16
heterogeneous-data-sources	16
peak-detection	16
isotope-cluster-modeling	15
proteomics-software	14
protein-protein-interactions	14
string-indexing	13
bacillus	13
data-integration	11
bchb-583-review	11
oligonucleotide-design	11
nopdf	11
spectral-matching	10
high-accuracy	9
serum-profiling	8
cancer-biomarkers	8
seed-strategies	8
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isotope-label	7
bchb-583	7
biomarkers	7
protein-quantitation-statistics	7
protein-identification	7
machine-learning	7
proteomics-data-standards	6
antibiotic-resistance	6
sequencing-by-hybridization-graph	6
gene-expression	6
review	6
genome-assembly	6
sequence-database	6
dna-based	6
locality-sensitive-hashing	6
peptide-spectrum-score	6
post-translational-modifications	6
ft-ms	5
c-terminal-peptides	5
acid-cleavage	5
membrane	5
proteomics-data-repository	5
proteomics-data	5
proteolytic-trimming	5
unique-oligonucleotides	5
peptide-atlas	4
proteomics-workflows	4
inexact-string-matching	4
msblast	4
stable-isotope-labeling	4
breast-cancer	4
protein-homology	3
short-read-sequencing	3
mascot	3
motif-finding	3
tandem	3
malaria	3
translation-initiation	3
haplotypes	3
alignment-anchors	3
algorithms	3
cancer	3
glycomics	3
prosight-score	3
glycoproteins	3
ribosomal-proteins	3
cadmium	3
hupo-ppp	2
species-signatures	2
tandem-mass-spectra	2
organelle	2
peptide-identification-combiners	2
external-algorithms	2
estrogen	2
graph-algorithms	2
gene-finders	2
hidden-markov-models	2
suffix-trees	2
spectral-counting	2
approximate-graph-matching	2
subtractive-proteomics	2
mudpit	2
proteoimcs	2
burrows-wheeler	2
signal-peptide	2
phasing	2
omssa	2
proteomics-projects	2
subcelluar-fractionation	1
plasma	1
gycomics	1
ovarian-cancer	1
approximation-algorithms	1
genetic-engineering	1
protoemics	1
staphylococcus-aureus	1
sequest	1
acetylation	1
androgen	1
multiplexed-pcr	1
histones	1
protein-isoforms	1
sequencing-technologies	1
drug-resistance	1
multidrug-resistance	1
proteomcs	1
prostate-cancer	1
phosphopeptide	1
orbitrap	1
ubiquitination	1
applied-statistics	1
biomarker	1
glyomics	1
partial-digest-problem	1
spectral-processing	1
randomized-algorithms	1
dynamic-exclusion	1
profile-correlation	1
proteogenomics	1
statistical-significance	1
electron-transfer-dissociation	1
sensitivity	1
correlation	1
fractionation	1
protomics	1
codon-adaption-index	1
shotgun	1
peptide-enumeration	1
specificity	1
alzheimers-disease	1
protein-motif-statistics	1
digest-specificity	1
protein-families	1
phylogenetic-analysis	1
metabolomics	1
combinatorics	1
protein-informatics	1
gas-phase-fractionation	1
hd-exchange	1
prosight	1
beta-lactamase	1
maldi	1
middle-down	1
data-resources	1
optimization	1
shutgun-proteomics	1
cloud-computing	1

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