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nedwards's protein-quantitation [38 articles]

Recent papers added to nedwards's library classified by the tag protein-quantitation. You can also see everyone's protein-quantitation.
  • Mass spectrometry-based proteomics turns quantitative.
    Nat Chem Biol, Vol. 1, No. 5. (October 2005), pp. 252-262.
    by SE Ong, M Mann
    posted to proteomics protein-quantitation mass-spectrometry isotope-label by nedwards on 2008-06-16 14:46:05 as ** along with 1 person balabu
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to proteomics protein-quantitation mass-spectrometry by nedwards on 2008-06-09 15:13:13 as ** along with 1 person olberd
  • Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
    Mol Cell Proteomics, Vol. 4, No. 9. (1 September 2005), pp. 1265-1272.
    by Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, Matthias Mann
    posted to tandem-mass-spectrometry proteomics protein-quantitation-statistics protein-quantitation by nedwards on 2008-06-09 15:04:19 as ** along with 1 person nuin
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2008-03-24 16:38:32 as ** along with 4 people nuin jyuh raiyar olberd
  • Integration of 18O Labeling and Solution Isoelectric Focusing in a Shotgun Analysis of Mitochondrial Proteins
    J. Proteome Res., Vol. 6, No. 12. (7 December 2007), pp. 4601-4607.
    by Jinshan Wang, Peter Gutierrez, Nathan Edwards, Catherine Fenselau
    posted to isotope-label mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-16 19:55:55 as **
  • Top-Down Approaches for Measuring Expression Ratios of Intact Yeast Proteins Using Fourier Transform Mass Spectrometry
    Anal. Chem., Vol. 78, No. 3. (1 February 2006), pp. 686-694.
    by Y Du, BA Parks, S Sohn, KE Kwast, NL Kelleher
    posted to ft-ms mass-spectrometry protein-quantitation proteomics top-down by nedwards on 2007-12-12 20:08:27 as **
  • Quantitative Profile of Five Murine Core Proteomes Using Label-free Functional Proteomics.
    Mol Cell Proteomics, Vol. 6, No. 9. (September 2007), pp. 1560-1573.
    by PR Cutillas, B Vanhaesebroeck
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-11 14:10:48 as ** along with 3 people nuin jyuh js7814
  • Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples.
    J Sep Sci (2 August 2007)
    by Yishai Levin, Emanuel Schwarz, Lan Wang, F Markus M Leweke, Sabine Bahn
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-11 14:08:36 as ** along with 1 person jyuh
  • Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
    Mol Cell Proteomics, Vol. 4, No. 10. (1 October 2005), pp. 1487-1502.
    by William M Old, Karen Meyer-Arendt, Lauren Aveline-Wolf, Kevin G Pierce, Alex Mendoza, Joel R Sevinsky, Katheryn A Resing, Natalie G Ahn
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-11 14:01:16 as ** along with 3 people nuin kentsis js7814
  • Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1118-1126.
    by R Wang, JT Prince, EM Marcotte
    posted to label-free mass-spectrometry protein-quantitation proteomics proteomics-data by nedwards on 2007-12-10 22:24:45 as ** along with 2 people bjorns madhadron
  • A geometric approach for the alignment of liquid chromatography-mass spectrometry data.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by E Lange, C Gröpl, O Schulz-Trieglaff, A Leinenbach, C Huber, K Reinert
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 22:13:19 as ** along with 1 person jyuh
  • A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data
    Research in Computational Molecular Biology (2007), pp. 473-487.
    by Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 22:11:32 as ** along with 1 person olberd
  • Reproducible isolation of distinct, overlapping segments of the phosphoproteome
    Nature Methods, Vol. 4, No. 3. (11 February 2007), pp. 231-237.
    by Bernd Bodenmiller, Lukas N Mueller, Markus Mueller, Bruno Domon, Ruedi Aebersold
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 22:04:42 as **
  • An integrated mass spectrometric and computational framework for the analysis of protein interaction networks
    Nature Biotechnology, Vol. 25, No. 3. (25 February 2007), pp. 345-352.
    by Oliver Rinner, Lukas N Mueller, Martin Hubálek, Markus Müller, Matthias Gstaiger, Ruedi Aebersold
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 22:03:30 as ** along with 5 people and 1 group jyuh okarsligil jfr Dualsystems mingzhi Bioinformatics
  • SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
    Proteomics (28 August 2007)
    by Lukas N N Mueller, Oliver Rinner, Alexander Schmidt, Simon Letarte, Bernd Bodenmiller, Mi-Youn Y Brusniak, Olga Vitek, Ruedi Aebersold, Markus Müller
    posted to label-free mass-spectrometry protein-quantitation proteomics proteomics-data by nedwards on 2007-12-10 21:59:31 as ** along with 2 people jyuh operon
  • A statistical method for chromatographic alignment of LC-MS data
    Biostatistics, Vol. 8, No. 2. (April 2007), pp. 357-367.
    by Pei Wang, Hua Tang, Matthew P Fitzgibbon, Martin Mcintosh, Marc Coram, Eugene Yi, Ruedi Aebersold
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-10 21:45:56 as ** along with 1 person BIBLIOma
  • Difference detection in LC-MS data for protein biomarker discovery
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e198-e204.
    by Jennifer Listgarten, Radford M Neal, Sam T Roweis, Peter Wong, Andrew Emili
    posted to label-free mass-spectrometry protein-quantitation proteomics proteomics-data by nedwards on 2007-12-10 21:43:14 as ** along with 1 person BIBLIOma
  • Alignment of Mass Spectrometry Data by Clique Finding and Optimization
    Systems Biology and Computational Proteomics (2007), pp. 119-129.
    by Daniel Fasulo, Anne-Katrin Emde, Lu-Yong Wang, Karin Noy, Nathan Edwards
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-10-04 15:30:13 as **
  • Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1378-1388.
    by Daniel B Mcclatchy, Lujian Liao, Sung K Park, John D Venable, John R Yates
    posted to isotope-label mass-spectrometry protein-quantitation proteomics by nedwards on 2007-10-01 21:11:02 as **
  • Improved method for differential expression proteomics using trypsin-catalyzed 18O labeling with a correction for labeling efficiency
    Mol Cell Proteomics (23 February 2007), T600029-MCP200.
    by Antonio Ramos-Fernandez, Daniel Lopez-Ferrer, Jesus Vazquez
    posted to protein-quantitation protein-quantitation-statistics proteomics stable-isotope-labeling by nedwards on 2007-09-26 22:17:22 as **
  • Achieving in-depth proteomics profiling by mass spectrometry.
    ACS Chem Biol, Vol. 2, No. 1. (23 January 2007), pp. 39-52.
    by NG Ahn, JB Shabb, WM Old, KA Resing
    posted to mass-spectrometry peptide-identification protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:05:40 as ** along with 1 person jyuh
  • Protein abundance quantification in embryonic stem cells using incomplete metabolic labelling with 15N amino acids, matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry, and analysis of relative isotopologue abundances of peptides.
    Rapid Commun Mass Spectrom, Vol. 17, No. 12. (2003), pp. 1273-1282.
    by JA Vogt, K Schroer, K Hölzer, C Hunzinger, M Klemm, K Biefang-Arndt, S Schillo, MA Cahill, A Schrattenholz, H Matthies, W Stegmann
    posted to mass-spectrometry protein-quantitation proteomics stable-isotope-labeling by nedwards on 2007-09-05 16:03:38 as **
  • Regression analysis for comparing protein samples with 16O/18O stable-isotope labeled mass spectrometry
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2739-2745.
    by JE Eckel-Passow, AL Oberg, TM Therneau, CJ Mason, DW Mahoney, KL Johnson, JE Olson, HR Bergen
    posted to protein-quantitation protein-quantitation-statistics proteomics stable-isotope-labeling by nedwards on 2007-08-29 16:15:26 as **
  • A Method for Automatically Interpreting Mass Spectra of 18O-Labeled Isotopic Clusters
    Mol Cell Proteomics, Vol. 6, No. 2. (1 February 2007), pp. 305-318.
    by Christopher J Mason, Terry M Therneau, Jeanette E Eckel-Passow, Kenneth L Johnson, Ann L Oberg, Janet E Olson, Sreekumaran K Nair, David C Muddiman, Robert H Bergen
    posted to stable-isotope-labeling proteomics protein-quantitation mass-spectrometry isotope-cluster-modeling by nedwards on 2007-08-29 16:14:22 as **
  • An Automated Method for Scanning LC-MS Data Sets for Significant Peptides and Proteins, Including Quantitative Profiling and Interactive Confirmation.
    J Proteome Res, Vol. 6, No. 7. (6 July 2007), pp. 2888-2895.
    by Anders Kaplan, Malin Söderström, David Fenyö, Anna Nilsson, Maria Fälth, Karl Sköld, Marcus Svensson, Harald Pettersen, Staffan Lindqvist, Per Svenningsson, Per E Andrén, Lennart Björkesten
    posted to protein-quantitation protein-quantitation-statistics proteomics proteomics-software by nedwards on 2007-08-24 18:29:08 as ** along with 2 people jyuh kentsis
  • Method for Qualitative Comparisons of Protein Mixtures Based on Enzyme-Catalyzed Stable-Isotope Incorporation
    J. Proteome Res., Vol. 4, No. 6. (12 December 2005), pp. 2109-2116.
    by E Mirgorodskaya, E Wanker, A Otto, H Lehrach, J Gobom
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2007-08-22 16:13:49 as **
  • A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry.
    Mol Cell Proteomics, Vol. 4, No. 9. (September 2005), pp. 1328-1340.
    by XJ Li, EC Yi, CJ Kemp, H Zhang, R Aebersold
    posted to mass-spectrometry protein-quantitation proteomics proteomics-software by nedwards on 2007-08-22 16:12:22 as ** along with 1 person Gehrke
  • Absolute Myoglobin Quantitation in Serum by Combining Two-Dimensional Liquid Chromatography-Electrospray Ionization Mass Spectrometry and Novel Data Analysis Algorithms
    J. Proteome Res., Vol. 5, No. 2. (3 February 2006), pp. 414-421.
    by BM Mayr, O Kohlbacher, K Reinert, M Sturm, C Gropl, E Lange, C Klein, CG Huber
    posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-08-22 16:06:09 as **
  • Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-Free Proteomics
    J. Proteome Res., Vol. 5, No. 2. (3 February 2006), pp. 277-286.
    by SJ Callister, RC Barry, JN Adkins, ET Johnson, WJ Qian, BJM Webb-Robertson, RD Smith, MS Lipton
    posted to label-free mass-spectrometry protein-quantitation protein-quantitation-statistics proteomics by nedwards on 2007-08-22 16:03:31 as **
  • A model for random sampling and estimation of relative protein abundance in shotgun proteomics.
    Anal Chem, Vol. 76, No. 14. (15 July 2004), pp. 4193-4201.
    by H Liu, RG Sadygov, JR Yates
    posted to peptide-identification peptide-identification-statistics protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-08-20 17:35:14 as ** along with 1 person kentsis
  • Quantitative MS for proteomics: teaching a new dog old tricks.
    Anal Chem, Vol. 77, No. 15. (1 August 2005)
    by MJ MacCoss, DE Matthews
    posted to protein-quantitation proteomics by nedwards on 2007-08-20 14:51:03 as **
  • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    Nat Biotech, Vol. 25, No. 1. (February 2007), pp. 117-124.
    by Peng Lu, Christine Vogel, Rong Wang, Xin Yao, Edward M Marcotte
    posted to mass-spectrometry protein-quantitation protein-quantitation-statistics proteomics by nedwards on 2007-08-14 20:33:12 as ** along with 9 people and 1 group ptrobajo caseybrown ihpark jyuh balabu nickluscombe aswin nicoleq dylan77 EBI-regulation
  • A review of quantitative methods for proteomic studies.
    J Chromatogr B Analyt Technol Biomed Life Sci, Vol. 855, No. 1. (1 August 2007), pp. 14-20.
    by C Fenselau
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2007-08-14 18:13:26 as ** along with 1 person jyuh
  • New algorithm for 15N/14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer.
    J Proteome Res, Vol. 5, No. 8. (August 2006), pp. 2039-2045.
    by VP Andreev, L Li, T Rejtar, Q Li, JG Ferry, BL Karger
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2007-08-14 16:11:15 as ** along with 1 person kentsis
  • Assessing bias in experiment design for large-scale mass spectrometry-based quantitative proteomics.
    Mol Cell Proteomics (7 July 2007)
    by Brian Piening, Jeff Whiteaker, Heidi Zhang, Scott A A Schaffer, Daniel Martin, Laura Hohmann, Kelly Cooke, James Olson, Stacey Hansen, Mark R R Flory, Hookeun Lee, Julian Watts, David R R Goodlett, Ruedi Aebersold, Amanda Paulovich, Benno Schwikowski, Amol Prakash
    posted to mass-spectrometry protein-quantitation protein-quantitation-statistics proteomics by nedwards on 2007-08-08 14:17:05 as *** along with 2 people jyuh kentsis
  • Reproducibility Assessment of Relative Quantitation Strategies for LC-MS Based Proteomics
    Anal. Chem. (20 June 2007)
    by YJ Kim, P Zhan, B Feild, SM Ruben, T He
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2007-08-08 14:03:43 as ** along with 1 person jyuh
  • A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1902-1909.
    by M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, J Eng, R Fang, C Lin, J Chen, D Goodlett, J Whiteaker, A Paulovich, M McIntosh
    posted to proteomics-software proteomics protein-quantitation peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2007-08-07 17:03:04 as *** along with 2 people olberd Gehrke
  • TOPP--the OpenMS proteomics pipeline.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, M Sturm
    posted to mass-spectrometry protein-quantitation proteomics proteomics-software by nedwards on 2007-08-07 17:02:23 as *** along with 2 people moborg Gehrke
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