nedwards's string-indexing [13 articles] Export

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	Effect of the mutation rate and background size on the quality of pathogen identification [My Copy] Bioinformatics, Vol. 23, No. 20. (19 September 2007), pp. btm420-2671. by Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov posted to dna-based microorganism-identification sequence-alignment string-indexing string-matching by nedwards on 2007-12-14 17:02:58 as along with 1 person druvus
	Comprehensive DNA Signature Discovery and Validation [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e98. by Adam M. Phillippy, Jacquline A. Mason, Kunmi Ayanbule, et al.Daniel D. Sommer, Elisa Taviani, Anwar Huq, Rita R. Colwell, Ivor T. Knight, Steven L. Salzberg posted to microorganism-identification string-indexing unique-oligonucleotides by nedwards on 2007-09-13 18:17:22 as
	YASS: enhancing the sensitivity of DNA similarity search. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by L. Noé, G. Kucherov posted to gapped-seeds locality-sensitive-hashing string-indexing string-matching by nedwards on 2007-09-05 16:11:36 as along with 1 person bozdagd
	Generalized correlation functions and their applications in selection of optimal multiple spaced seeds for homology search. [My Copy] J Comput Biol, Vol. 14, No. 2. (March 2007), pp. 238-254. by Y. Kong posted to gapped-seeds locality-sensitive-hashing sequence-alignment string-indexing string-matching by nedwards on 2007-09-05 16:09:43 as
	On spaced seeds for similarity search [My Copy] Discrete Applied Mathematics, Vol. 138, No. 3. (15 April 2004), pp. 253-263. by Uri Keich, Ming Li, Bin Ma, John Tromp posted to gapped-seeds seed-strategies sequence-alignment string-indexing by nedwards on 2007-09-05 14:00:50 as along with 1 person n00c
	Space-efficient whole genome comparisons with Burrows-Wheeler transforms. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 4. (May 2005), pp. 407-415. by Ross A. Lippert posted to burrows-wheeler seed-strategies sequence-alignment string-indexing string-matching by nedwards on 2007-08-30 16:08:16 as along with 3 people and 1 group polivares n00c antonkratz BergmanLab
	Algorithms on strings, trees, and sequences : computer science and computational biology [My Copy] (15 January 2007) by Dan Gusfield posted to inexact-string-matching sequence-alignment string-indexing string-matching suffix-trees by nedwards on 2007-08-22 14:20:28 as along with 20 people and 2 groups abergeron n00c stharward enricos Scis0000002 Neeperando mircea renewang timflutre ujh creswick tijl grzegorz luispedro emranmohdtamil hoangmit thonnardo pool007 ep161302 reyez Centre de Recherches Interdisciplinaires Pattern-Analysis
	PatternHunter: faster and more sensitive homology search [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 440-445. by Bin Ma, John Tromp, Ming Li posted to gapped-seeds inexact-string-matching locality-sensitive-hashing sequence-alignment string-indexing string-matching by nedwards on 2007-08-20 15:01:41 as along with 11 people n00c druvus maria_hauser mmartin umit nuke2005 catmat treangen natstreet DickSilver bozdagd
	The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 91-93. by James W. Kent, Alan M. Zahler posted to alignment-anchors seed-strategies sequence-alignment string-indexing by nedwards on 2007-08-17 18:39:58 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data [My Copy] Journal of Computational Biology, Vol. 12, No. 7. (September 2005), pp. 943-951. by Ross .. Lippert,, Clark .. Mobarry,, Brian .. Walenz, posted to burrows-wheeler seed-strategies sequence-alignment string-indexing by nedwards on 2007-08-17 15:04:15 as along with 4 people lianping n00c antonkratz dleinhaeuser
	Reducing the space requirement of suffix trees [My Copy] Software: Practice and Experience, Vol. 29, No. 13. (November 1999), pp. 1149-1171. by Stefan Kurtz posted to sequence-alignment string-indexing suffix-trees by nedwards on 2007-08-17 14:46:20 as along with 3 people n00c dleinhaeuser ep161302
	Designing multiple simultaneous seeds for DNA similarity search [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology (2004), pp. 76-84. by Yanni Sun, Jeremy Buhler posted to gapped-seeds sequence-alignment string-indexing string-matching by nedwards on 2007-08-14 17:25:12 as
	Efficient large-scale sequence comparison by locality-sensitive hashing. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 5. (1 May 2001), pp. 419-428. by J. Buhler posted to gapped-seeds sequence-alignment string-indexing string-matching by nedwards on 2007-08-14 17:12:49 as along with 2 people and 1 group ghattem RamuAnandakrishnan SIMR bioinformatics

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proteomics	327
tandem-mass-spectrometry	183
peptide-identification	143
mass-spectrometry	98
microorganism-identification	52
protein-quantitation	51
systems-biology	51
sequence-alignment	46
string-matching	40
peptide-identification-statistics	38
gapped-seeds	33
denovo-interpretation	30
n-terminal-peptides	28
genome-annotation	24
label-free	24
top-down	19
phosphorylation	16
heterogeneous-data-sources	16
peak-detection	16
isotope-cluster-modeling	15
proteomics-software	14
protein-protein-interactions	14
string-indexing	13
bacillus	13
data-integration	11
bchb-583-review	11
oligonucleotide-design	11
nopdf	11
spectral-matching	10
high-accuracy	9
serum-profiling	8
cancer-biomarkers	8
seed-strategies	8
alternative-splicing	7
isotope-label	7
bchb-583	7
biomarkers	7
protein-quantitation-statistics	7
protein-identification	7
machine-learning	7
proteomics-data-standards	6
antibiotic-resistance	6
sequencing-by-hybridization-graph	6
gene-expression	6
review	6
genome-assembly	6
sequence-database	6
dna-based	6
locality-sensitive-hashing	6
peptide-spectrum-score	6
post-translational-modifications	6
ft-ms	5
c-terminal-peptides	5
acid-cleavage	5
membrane	5
proteomics-data-repository	5
proteomics-data	5
proteolytic-trimming	5
unique-oligonucleotides	5
peptide-atlas	4
proteomics-workflows	4
inexact-string-matching	4
msblast	4
stable-isotope-labeling	4
breast-cancer	4
protein-homology	3
short-read-sequencing	3
mascot	3
motif-finding	3
tandem	3
malaria	3
translation-initiation	3
haplotypes	3
alignment-anchors	3
algorithms	3
cancer	3
glycomics	3
prosight-score	3
glycoproteins	3
ribosomal-proteins	3
cadmium	3
hupo-ppp	2
species-signatures	2
tandem-mass-spectra	2
organelle	2
peptide-identification-combiners	2
external-algorithms	2
estrogen	2
graph-algorithms	2
gene-finders	2
hidden-markov-models	2
suffix-trees	2
spectral-counting	2
approximate-graph-matching	2
subtractive-proteomics	2
mudpit	2
proteoimcs	2
burrows-wheeler	2
signal-peptide	2
phasing	2
omssa	2
proteomics-projects	2
subcelluar-fractionation	1
plasma	1
gycomics	1
ovarian-cancer	1
approximation-algorithms	1
genetic-engineering	1
protoemics	1
staphylococcus-aureus	1
sequest	1
acetylation	1
androgen	1
multiplexed-pcr	1
histones	1
protein-isoforms	1
sequencing-technologies	1
drug-resistance	1
multidrug-resistance	1
proteomcs	1
prostate-cancer	1
phosphopeptide	1
orbitrap	1
ubiquitination	1
applied-statistics	1
biomarker	1
glyomics	1
partial-digest-problem	1
spectral-processing	1
randomized-algorithms	1
dynamic-exclusion	1
profile-correlation	1
proteogenomics	1
statistical-significance	1
electron-transfer-dissociation	1
sensitivity	1
correlation	1
fractionation	1
protomics	1
codon-adaption-index	1
shotgun	1
peptide-enumeration	1
specificity	1
alzheimers-disease	1
protein-motif-statistics	1
digest-specificity	1
protein-families	1
phylogenetic-analysis	1
metabolomics	1
combinatorics	1
protein-informatics	1
gas-phase-fractionation	1
hd-exchange	1
prosight	1
beta-lactamase	1
maldi	1
middle-down	1
data-resources	1
optimization	1
shutgun-proteomics	1
cloud-computing	1

nedwards's string-indexing [13 articles] Export

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