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Quantification of Membrane Proteins Using Nonspecific Protease Digestions. Export

Journal of proteome research, Vol. 0, No. 0. (9 November 2009)

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mass-spec membrane protease protein proteomics quantitation

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We present a mass spectrometry-based method for the identification and quantification of membrane proteins using the low-specificity protease Proteinase K, at very high pH, to digest proteins isolated by a modified SDS-PAGE protocol. The resulting peptides are modified with a fragmentation-directing isotope labeled tag. We apply the method to quantify differences in membrane protein expression of Bacillus subtilis grown in the presence or absence of glucose.


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