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neils's article-nar [17 articles]

Recent papers added to neils's library classified by the tag article-nar. You can also see everyone's article-nar.
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to algorithm database amino-acid transduction structure software sites signal sequence proteome protein phosphorylation motifs internet binding article-predikin article-nar analysis by neils on 2008-04-24 16:16:06 as ** along with 2 people Evangelia mloewer
  • GPS: a comprehensive www server for phosphorylation sites prediction.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187.
    by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
    posted to phosphoprotein kinase analysis article-nar article-predikin internet microfilament phosphorylation protein sequence software specificity substrate tissue by neils on 2007-12-04 03:22:14 as **
  • PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
    BMC Bioinformatics, Vol. 7 (2006)
    by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
    posted to kinase amino-acid alignment analysis article-nar article-predikin bayes binding data molecular phosphorylation protein sequence sites software theorem by neils on 2007-12-04 03:22:14 as **
  • The Bioperl toolkit: Perl modules for the life sciences.
    Genome Res, Vol. 12, No. 10. (Oct 2002), pp. 1611-1618.
    by Jason E Stajich, David Block, Kris Boulez, Steven E Brenner, Stephen A Chervitz, Chris Dagdigian, Georg Fuellen, James GR Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehväslaiho, Chad Matsalla, Chris J Mungall, Brian I Osborne, Matthew R Pocock, Peter Schattner, Martin Senger, Lincoln D Stein, Elia Stupka, Mark D Wilkinson, Ewan Birney
    posted to system human animal algorithm genetics article-nar article-predikin biological biology computational computer database design graphics integration internet management online perl sciences software by neils on 2007-12-04 03:22:14 as **
  • ROCR: visualizing classifier performance in R.
    Bioinformatics, Vol. 21, No. 20. (Oct 2005), pp. 3940-3941.
    by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    posted to statistics article-nar article-predikin automated computer curve data graphics interface interpretation languages pattern programming recognition roc software user-computer validation by neils on 2007-12-04 03:22:14 as **
  • Protein disorder prediction: implications for structural proteomics.
    Structure, Vol. 11, No. 11. (Nov 2003), pp. 1453-1459.
    by Rune Linding, Lars J Jensen, Francesca Diella, Peer Bork, Toby J Gibson, Robert B Russell
    posted to network ray ligand domain article-nar article-predikin circular computer conformation crystallography dichroism homology magnetic models neural protein proteome resonance sensitivity specificity spectroscopy src statistics temperature theoretical topic ultraviolet x-ray by neils on 2007-12-04 03:22:13 as **
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D257-D260.
    by Ivica Letunic, Richard R Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    posted to complex database alignment analysis article-nar article-pka-pkg article-predikin biological catalysis catalytic domain genomics interface internet models multiprotein protein sequence structure tertiary user-computer by neils on 2007-12-04 03:22:13 as **
  • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J Mol Biol, Vol. 305, No. 3. (Jan 2001), pp. 567-580.
    by A Krogh, B Larsson, G von Heijne, EL Sonnhammer
    posted to fungi chain signal porin database bacteria article-nar article-predikin computational design genome internet markov membrane of plant protein reproducibility research results secondary sensitivity software solubility sorting specificity structure by neils on 2007-12-04 03:22:13 as **
  • Substrate specificity of protein kinases and computational prediction of substrates.
    Biochim Biophys Acta, Vol. 1754, No. 1-2. (Dec 2005), pp. 200-209.
    by Bostjan Kobe, Thorsten Kampmann, Jade K Forwood, Pawel Listwan, Ross I Brinkworth
    posted to phosphatase peptide kinase article-nar article-predikin binding biology computational models molecular phosphoprotein phosphorylation protein secondary sites specificity structure substrate by neils on 2007-12-04 03:22:13 as **
  • Kinomics: methods for deciphering the kinome.
    Nat Methods, Vol. 2, No. 1. (Jan 2005), pp. 17-25.
    by Sam A Johnson, Tony Hunter
    posted to human animal kinase genetics mass-spec adenosine article-nar article-predikin biology computational computer-assisted genome image phosphorylation processing protein proteome software structure techniques tertiary triphosphate by neils on 2007-12-04 03:22:13 as **
  • KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W226-W229.
    by Hsien Da Huang, Tzong Y Lee, Shih W Tzeng, Jorng T Horng
    posted to phosphoprotein chain kinase analysis article-nar article-predikin biology computational internet markov phosphorylation protein sequence software by neils on 2007-12-04 03:22:12 as **
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to chain alignment article-nar article-predikin hmm library markov peptide sequence software by neils on 2007-12-04 03:22:12 as **
  • Sequence and structure-based prediction of eukaryotic protein phosphorylation sites.
    J Mol Biol, Vol. 294, No. 5. (Dec 1999), pp. 1351-1362.
    by N Blom, S Gammeltoft, S Brunak
    posted to network phosphoprotein animal cell amino-acid article-nar article-predikin binding computer consensus eukaryotic glycosylation models molecular motifs neural nuclear of phosphorylation phylogeny protein reproducibility results sensitivity sequence serine sites specificity structure substrate tertiary threonine trans-activators tyrosine by neils on 2007-12-04 03:22:11 as **
  • The PANTHER database of protein families, subfamilies, functions and pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D284-D288.
    by Huaiyu Mi, Betty L Ulitsky, Rozina Loo, Anish Kejariwal, Jody Vandergriff, Steven Rabkin, Nan Guo, Anushya Muruganujan, Olivier Doremieux, Michael J Campbell, Hiroaki Kitano, Paul D Thomas
    posted to article-nar article-pka-pkg database interface panther user-computer by neils on 2007-12-04 01:53:38 as **
  • A kinase sequence database: sequence alignments and family assignment
    Bioinformatics, Vol. 18, No. 9. (2002), pp. 1274-1275.
    by O Buzko, KM Shokat
    posted to sequence kinase article-nar article-pka-pkg database by neils on 2007-12-04 01:53:36 as **
  • Structural basis and prediction of substrate specificity in protein serine/threonine kinases.
    Proc Natl Acad Sci U S A, Vol. 100, No. 1. (Jan 2003), pp. 74-79.
    by Ross I Brinkworth, Robert A Breinl, Bostjan Kobe
    posted to article-nar article-pka-pkg specificity substrate by neils on 2007-12-04 01:53:36 as **
  • The PROSITE database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by N Hulo, A Bairoch, V Bulliard, L Cerutti, E De Castro, PS Langendijk-Genevaux, M Pagni, CJ Sigrist
    posted to article-nar article-pka-pkg bioinformatics database motif by neils on 2007-11-21 13:07:03 as ** along with 5 people and 1 group yas happy_manatee sriram_s massivemayhem siebertm T_lab
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