neils's article-predikin [51 articles] Export

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	Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641. by John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as along with 3 people chica mloewer Evangelia
	Identification of Phosphorylation Sites in Protein Kinase A Substrates Using Artificial Neural Networks and Mass Spectrometry [My Copy] J. Proteome Res., Vol. 3, No. 3. (14 June 2004), pp. 426-433. by M. Hjerrild, A. Stensballe, T. E. Rasmussen, et al.C. B. Kofoed, N. Blom, T. Sicheritz-Ponten, M. R. Larsen, S. Brunak, O. N. Jensen, S. Gammeltoft posted to article-predikin bioinformatics netphosk neural-network phosphorylation prediction mass-spec by neils on 2008-04-16 04:05:30 as
	Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment. [My Copy] Cell Cycle, Vol. 4, No. 1. (Jan 2005), pp. 52-56. by Guozhi Zhu, Yin Liu, Stephen Shaw posted to activation article-predikin enzyme fragments interaction mapping peptide phosphorylation protein sequence signal specificity substrate transduction amino-acid kinase human by neils on 2007-12-04 03:22:14 as
	GPS: a comprehensive www server for phosphorylation sites prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187. by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao posted to analysis article-nar article-predikin internet microfilament phosphorylation protein sequence software specificity substrate tissue kinase phosphoprotein by neils on 2007-12-04 03:22:14 as
	PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao posted to alignment analysis article-nar article-predikin bayes binding data molecular phosphorylation protein sequence sites software theorem amino-acid kinase by neils on 2007-12-04 03:22:14 as
	Calcium/calmodulin-dependent protein kinase II (CaMKII) localization acts in concert with substrate targeting to create spatial restriction for phosphorylation. [My Copy] J Biol Chem, Vol. 280, No. 10. (Mar 2005), pp. 9210-9216. by Jennifer Tsui, Masaki Inagaki, Howard Schulman posted to article-predikin calcium-calmodulin-dependent cell chain fusion kinase kinetics line membrane microdomains phosphorylation polymerase protein reaction recombinant signal transduction transfection transport type human by neils on 2007-12-04 03:22:14 as
	The Bioperl toolkit: Perl modules for the life sciences. [My Copy] Genome Res, Vol. 12, No. 10. (Oct 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. R. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehväslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to article-nar article-predikin biological biology computational computer database design graphics integration internet management online perl sciences software human algorithm genetics animal system by neils on 2007-12-04 03:22:14 as
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics, Vol. 21, No. 20. (Oct 2005), pp. 3940-3941. by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to article-nar article-predikin automated computer curve data graphics interface interpretation languages pattern programming recognition roc software user-computer validation statistics by neils on 2007-12-04 03:22:14 as
	Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450. [My Copy] J Mol Biol, Vol. 322, No. 4. (Sep 2002), pp. 785-797. by James E. Sillibourne, Diane M. Milne, Mikiko Takahashi, Yoshitaka Ono, David W. Meek posted to adaptor aethiops anchor article-predikin carrier casein catalysis centrosome cercopithecus cos cytoskeletal data fractions fragments fusion isoenzymes kinase male molecular peptide precipitin protein recombinant sequence signal specificity structure subcellular substrate tertiary tests transducing amino-acid rat cell animal human by neils on 2007-12-04 03:22:14 as
	Phosphorylation of p90 ribosomal S6 kinase (RSK) regulates extracellular signal-regulated kinase docking and RSK activity. [My Copy] Mol Cell Biol, Vol. 23, No. 14. (Jul 2003), pp. 4796-4804. by Philippe P. Roux, Stephanie A. Richards, John Blenis posted to 90-kda article-predikin binding cultured data epidermal extracellular growth homology isoenzymes kinase matrix mitogen-activated mitogens molecular mutation phosphorylation protein ribosomal s6 sequence serine signal sites structure tertiary transduction factors amino-acid cell human by neils on 2007-12-04 03:22:14 as
	Docking interactions in protein kinase and phosphatase networks. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 6. (Dec 2006), pp. 676-685. by Attila Reményi, Matthew C. Good, Wendell A. Lim posted to allosteric article-predikin binding biological conformation design drug kinase map models molecular multiprotein phosphoprotein protein regulation signal signaling sites structure system tertiary transduction complex phosphatase by neils on 2007-12-04 03:22:14 as
	R: A Language and Environment for Statistical Computing [My Copy] (2007) by R-Foundation posted to article-predikin by neils on 2007-12-04 03:22:14 as
	A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases. [My Copy] J Mol Biol, Vol. 361, No. 2. (Aug 2006), pp. 312-326. by Michelle Pirruccello, Holger Sondermann, Jeffrey G. Pelton, et al.Patricia Pellicena, André Hoelz, Jonathan Chernoff, David E. Wemmer, John Kuriyan posted to activation article-predikin binding catalysis catalytic conformation crystallography data dimerization domain enzyme folding homology kinetics models molecular mutation p21-activated phosphopeptides phosphorylation protein protein-serine-threonine sequence sites structure tertiary x-ray amino-acid kinase human by neils on 2007-12-04 03:22:14 as
	How do protein kinases recognize their substrates? [My Copy] Biochim Biophys Acta, Vol. 1314, No. 3. (Dec 1996), pp. 191-225. by L. A. Pinna, M. Ruzzene posted to article-predikin consensus data library molecular peptide phosphorylation protein sequence specificity substrate amino-acid kinase animal by neils on 2007-12-04 03:22:14 as
	Protein kinase inhibitors: insights into drug design from structure. [My Copy] Science, Vol. 303, No. 5665. (Mar 2004), pp. 1800-1805. by Martin E. M. Noble, Jane A. Endicott, Louise N. Johnson posted to adenosine agents antineoplastic article-predikin as binding catalytic clinical conformation design domain drug enzyme kinase models molecular protein relationship signal sites structure structure-activity tertiary topic transduction trials triphosphate human inhibitor by neils on 2007-12-04 03:22:14 as
	pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model. [My Copy] Biol Direct, Vol. 2 (2007) by Georg Neuberger, Georg Schneider, Frank Eisenhaber posted to article-predikin by neils on 2007-12-04 03:22:14 as
	Active Ca2+/calmodulin-dependent protein kinase II gamma B impairs positive selection of T cells by modulating TCR signaling. [My Copy] J Immunol, Vol. 175, No. 2. (Jul 2005), pp. 656-664. by Maureen A. Mcgargill, Leslie L. Sharp, Jack D. Bui, Stephen M. Hedrick, Sébastien Calbo posted to article-predikin c57bl ca2-calmodulin calcium cd3 cell dependent differentiation female fluid homology inbred intracellular isoenzymes kinase knockout line lymphocyte male mice p56lck phosphorylation protein protein-tyrosine-phosphatase signal signaling specific src t-cell t-lymphocyte transduction transgenic tumor tyrosine domain human receptor animal antigen subset peptide by neils on 2007-12-04 03:22:14 as
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (Jun 2007), pp. 1415-1426. by Rune Linding, Lars J. Jensen, Gerard J. Ostheimer, et al.Marcel A. T. M. van Vugt, Claus Jørgensen, Ioana M. Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin G. Park, Leona D. Samson, James R. Woodgett, Robert B. Russell, Peer Bork, Michael B. Yaffe, Tony Pawson posted to article-predikin binding biology cdc2 cell computational cycle damage dna dna-binding factors glycogen intracellular kinase phosphorylation protein protein-serine-threonine proteomics repair repressor signal signaling sites software suppressor synthase transcription transduction tumor enzyme human phosphoprotein peptide by neils on 2007-12-04 03:22:14 as
	Protein disorder prediction: implications for structural proteomics. [My Copy] Structure, Vol. 11, No. 11. (Nov 2003), pp. 1453-1459. by Rune Linding, Lars J. Jensen, Francesca Diella, Peer Bork, Toby J. Gibson, Robert B. Russell posted to article-nar article-predikin circular computer conformation crystallography dichroism homology magnetic models neural protein proteome resonance sensitivity specificity spectroscopy src statistics temperature theoretical topic ultraviolet x-ray domain ray ligand network by neils on 2007-12-04 03:22:13 as
	Identification of residues which regulate activity of the STE20-related kinase hMINK. [My Copy] Biochem Biophys Res Commun, Vol. 300, No. 3. (Jan 2003), pp. 694-698. by Jaeseung Lim, Andrew Lennard, Paul W. Sheppard, Stuart Kellie posted to antibody article-predikin cell cerevisiae cloning data jnk kidney line mitogen-activated molecular mutagenesis organ phosphorylation potassium protein protein-serine-threonine relationship saccharomyces sequence site-directed specificity structure structure-activity tertiary voltage-gated amino-acid kinase channel human by neils on 2007-12-04 03:22:13 as
	SMART 5: domains in the context of genomes and networks. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D257-D260. by Ivica Letunic, Richard R. Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork posted to alignment analysis article-nar article-pka-pkg article-predikin biological catalysis catalytic domain genomics interface internet models multiprotein protein sequence structure tertiary user-computer database complex by neils on 2007-12-04 03:22:13 as
	The active conformation of the PAK1 kinase domain. [My Copy] Structure, Vol. 13, No. 5. (May 2005), pp. 769-778. by Ming Lei, Michael A. Robinson, Stephen C. Harrison posted to adenosine article-predikin binding data diffraction molecular mutation protein protein-serine-threonine sequence sites structure tertiary triphosphate x-ray kinase human by neils on 2007-12-04 03:22:13 as
	Machine learning in bioinformatics. [My Copy] Brief Bioinform, Vol. 7, No. 1. (Mar 2006), pp. 86-112. by Pedro Larrañaga, Borja Calvo, Roberto Santana, et al.Concha Bielza, Josu Galdiano, Iñaki Inza, José A. Lozano, Rubén Armañanzas, Guzmán Santafé, Aritz Pérez, Victor Robles posted to article-predikin by neils on 2007-12-04 03:22:13 as
	Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases. [My Copy] J Mol Biol, Vol. 339, No. 5. (Jun 2004), pp. 1025-1039. by A. Krupa, G. Preethi, N. Srinivasan posted to activation adenosine alignment article-predikin catalytic data domain enzyme models molecular phosphorylation protein protein-serine-threonine protein-tyrosine sequence signal structure tertiary transduction triphosphate amino-acid kinase by neils on 2007-12-04 03:22:13 as
	Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. [My Copy] J Mol Biol, Vol. 305, No. 3. (Jan 2001), pp. 567-580. by A. Krogh, B. Larsson, G. von Heijne, E. L. Sonnhammer posted to article-nar article-predikin computational design genome internet markov membrane of plant protein reproducibility research results secondary sensitivity software solubility sorting specificity structure bacteria chain fungi database porin signal by neils on 2007-12-04 03:22:13 as
	Substrate specificity of protein kinases and computational prediction of substrates. [My Copy] Biochim Biophys Acta, Vol. 1754, No. 1-2. (Dec 2005), pp. 200-209. by Bostjan Kobe, Thorsten Kampmann, Jade K. Forwood, Pawel Listwan, Ross I. Brinkworth posted to article-nar article-predikin binding biology computational models molecular phosphoprotein phosphorylation protein secondary sites specificity structure substrate kinase peptide phosphatase by neils on 2007-12-04 03:22:13 as
	Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. [My Copy] Plant J, Vol. 44, No. 6. (Dec 2005), pp. 939-949. by Yuhko Kobayashi, Michiharu Murata, Hideyuki Minami, et al.Shuhei Yamamoto, Yasuaki Kagaya, Tokunori Hobo, Akiko Yamamoto, Tsukaho Hattori posted to abscisic activation article-predikin basic-leucine data elements enzyme expression factors gene growth kinetics molecular oryza osmotic phosphorylation plant pressure protein-serine-threonine recombinant regulation response sativa sequence serine signal transcription transduction zipper amino-acid kinase protein regulator by neils on 2007-12-04 03:22:13 as
	Prediction of phosphorylation sites using SVMs. [My Copy] Bioinformatics, Vol. 20, No. 17. (Nov 2004), pp. 3179-3184. by Jong H. Kim, Juyoung Lee, Bermseok Oh, Kuchan Kimm, Insong Koh posted to alignment analysis article-predikin artificial binding chemical computer intelligence models molecular phosphorylation protein relationship sequence simulation sites structure-activity algorithm phosphotransferase by neils on 2007-12-04 03:22:13 as
	Protein kinases and protein phosphatases in prokaryotes: a genomic perspective. [My Copy] FEMS Microbiol Lett, Vol. 206, No. 1. (Jan 2002), pp. 1-8. by Peter J. Kennelly posted to article-predikin phosphoprotein phosphorylation prokaryotic protein cell kinase phosphatase by neils on 2007-12-04 03:22:13 as
	Archaeal protein kinases and protein phosphatases: insights from genomics and biochemistry. [My Copy] Biochem J, Vol. 370, No. Pt 2. (Mar 2003), pp. 373-389. by Peter J. Kennelly posted to activation archaea article-predikin enzyme phosphoprotein phosphorus phylogeny protein radioisotope kinase phosphatase by neils on 2007-12-04 03:22:13 as
	Biochemical characterization of the tobacco 42-kD protein kinase activated by osmotic stress. [My Copy] Plant Physiol, Vol. 136, No. 2. (Oct 2004), pp. 3255-3265. by Anna Kelner, Izabela Pekala, Szymon Kaczanowski, Grazyna Muszynska, Grahame D. Hardie, Grazyna Dobrowolska posted to activation adenosine article-predikin calcium chlorides data enzyme evolution homology kinase magnesium manganese molecular monophosphate osmotic phylogeny pressure protein sequence specificity substrate tobacco water amino-acid inhibitor by neils on 2007-12-04 03:22:13 as
	A cyclin-dependent kinase that promotes cytokinesis through modulating phosphorylation of the carboxy terminal domain of the RNA Pol II Rpb1p sub-unit. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by Jim Karagiannis, Mohan K. Balasubramanian posted to article-predikin by neils on 2007-12-04 03:22:13 as
	C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats. [My Copy] J Biol Chem, Vol. 279, No. 24. (Jun 2004), pp. 24957-24964. by Janice C. Jones, Hemali P. Phatnani, Timothy A. Haystead, Justin A. Macdonald, Munir S. Alam, Arno L. Greenleaf posted to article-predikin data molecular monoclonal phosphorylation polymerase protein repetitive rna saccharomycetales sequence serine specificity substrate amino-acid kinase antibody by neils on 2007-12-04 03:22:13 as
	Kinomics: methods for deciphering the kinome. [My Copy] Nat Methods, Vol. 2, No. 1. (Jan 2005), pp. 17-25. by Sam A. Johnson, Tony Hunter posted to adenosine article-nar article-predikin biology computational computer-assisted genome image phosphorylation processing protein proteome software structure techniques tertiary triphosphate mass-spec human kinase genetics animal by neils on 2007-12-04 03:22:13 as
	KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W226-W229. by Hsien Da Huang, Tzong Y. Lee, Shih W. Tzeng, Jorng T. Horng posted to analysis article-nar article-predikin biology computational internet markov phosphorylation protein sequence software chain kinase phosphoprotein by neils on 2007-12-04 03:22:12 as
	Amino acid substitution matrices from protein blocks. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 22. (Nov 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to article-predikin caenorhabditis data drosophila elegans homology lod mathematics molecular probability score sequence software amino-acid algorithm protein animal by neils on 2007-12-04 03:22:12 as
	Induction of apoptosis by the Ste20-like kinase SLK, a germinal center kinase that activates apoptosis signal-regulating kinase and p38. [My Copy] J Biol Chem, Vol. 281, No. 6. (Feb 2006), pp. 3075-3084. by Wen Hao, Tomoko Takano, Julie Guillemette, Joan Papillon, Guohui Ren, Andrey V. Cybulsky posted to activation aethiops apoptosis article-predikin calcium caspase catalytic cell cercopithecus complementary cos cycle densitometry dimerization dna domain endoplasmic enzyme eukaryotic factor-2 glucose growth heat-shock hepatocyte hsp70 immunoblotting immunoprecipitation initiation injury ionophores jnk kinase line map membrane mitogen-activated nerve p38 phosphorylation protein protein-serine-threonine proto-oncogene reperfusion reticulum structure tertiary tissue tunicamycin factors rat dog animal cytochrome by neils on 2007-12-04 03:22:12 as
	BRSK2 is activated by cyclic AMP-dependent protein kinase A through phosphorylation at Thr260. [My Copy] Biochem Biophys Res Commun, Vol. 347, No. 4. (Sep 2006), pp. 867-871. by Zekun Guo, Wenwen Tang, Jian Yuan, et al.Xinya Chen, Bo Wan, Xiuting Gu, Kuntian Luo, Yingli Wang, Long Yu posted to activation alignment amp-dependent article-predikin cyclic data enzyme molecular phosphorylation protein protein-serine-threonine sequence threonine amino-acid kinase by neils on 2007-12-04 03:22:12 as
	Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors. [My Copy] J Biol Chem, Vol. 279, No. 6. (Feb 2004), pp. 4612-4624. by Katrin de Graaf, Paul Hekerman, Oliver Spelten, et al.Andreas Herrmann, Len C. Packman, Konrad Büssow, Gerhard M. Newen, Walter Becker posted to arginine article-predikin base cell complementary cos data dna factors fusion male mice molecular nucleus phosphorylation protein protein-serine-threonine protein-tyrosine recombinant rna sequence serine specificity splicing structure substrate tertiary transcription amino-acid rat kinase animal human cyclin by neils on 2007-12-04 03:22:12 as
	Pfam: clans, web tools and services. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D247-D251. by Robert D. Finn, Jaina Mistry, Benjamin S. Böckler, et al.Sam G. Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman posted to alignment article-predikin computer graphics interface internet markov protein sequence software structure tertiary user-computer chain database by neils on 2007-12-04 03:22:12 as
	ROC graphs: Notes and practical considerations for data mining researchers [My Copy] (January 2003) by Tom Fawcett posted to article-predikin by neils on 2007-12-04 03:22:12 as
	Profile hidden Markov models. [My Copy] Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763. by S. R. Eddy posted to alignment article-nar article-predikin hmm library markov peptide sequence software chain by neils on 2007-12-04 03:22:12 as
	The kinase Grk2 regulates Nedd4/Nedd4-2-dependent control of epithelial Na+ channels. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 32. (Aug 2004), pp. 11886-11890. by Anuwat Dinudom, Andrew B. Fotia, Robert J. Lefkowitz, John A. Young, Sharad Kumar, David I. Cook posted to amp-dependent article-predikin beta-adrenergic biochemical cattle chemical cultured cyclic electrophysiology epithelial feedback g-protein-coupled hypertension ligases male mice models phosphorylation protein receptor salivary sodium ubiquitin-protein cell kinase animal channel duct by neils on 2007-12-04 03:22:12 as
	Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. [My Copy] BMC Bioinformatics, Vol. 5 (Jun 2004) by Francesca Diella, Scott Cameron, Christine Gemünd, et al.Rune Linding, Allegra Via, Bernhard Kuster, Thomas S. Pontén, Nikolaj Blom, Toby J. Gibson posted to article-predikin binding design mice phosphorylation post-translational processing protein research sites software rat database animal human by neils on 2007-12-04 03:22:12 as
	Phosphorylation of the mitochondrial protein Sab by stress-activated protein kinase 3. [My Copy] Biochem Biophys Res Commun, Vol. 319, No. 1. (Jun 2004), pp. 130-137. by Naomi W. Court, Ivana Kuo, Oonagh Quigley, Marie A. Bogoyevitch posted to adaptor article-predikin binding cardiac carrier cell glutathione jnk kinase line map mitochondria mitogen-activated mutagenesis mutation myocytes phosphorylation protein serine signal signaling site-directed specificity structure substrate system tertiary transducing transferase rat human animal by neils on 2007-12-04 03:22:12 as
	ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (Jul 2006), pp. W362-W365. by Edouard de Castro, Christian J. A. Sigrist, Alexandre Gattiker, et al.Virginie Bulliard, Petra, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo posted to analysis article-predikin homology interface internet protein sequence software structure tertiary user-computer amino-acid database by neils on 2007-12-04 03:22:12 as
	A kinase sequence database: sequence alignments and family assignment. [My Copy] Bioinformatics, Vol. 18, No. 9. (Sep 2002), pp. 1274-1275. by Oleksandr Buzko, Kevan M. Shokat posted to alignment analysis article-predikin cluster database homology information internet management protein retrieval sequence storage kinase system by neils on 2007-12-04 03:22:12 as
	Protein kinases associated with the yeast phosphoproteome. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by Ross I. Brinkworth, Alan L. Munn, Bostjan Kobe posted to alignment analysis article-predikin cerevisiae data interaction mapping molecular phosphorylation protein proteome saccharomyces sequence specificity substrate amino-acid fungi kinase phosphoprotein by neils on 2007-12-04 03:22:12 as
	Uses for JNK: the many and varied substrates of the c-Jun N-terminal kinases. [My Copy] Microbiol Mol Biol Rev, Vol. 70, No. 4. (Dec 2006), pp. 1061-1095. by Marie A. Bogoyevitch, Bostjan Kobe posted to article-predikin biological jnk mitogen-activated models protein signal specificity substrate transduction human kinase animal by neils on 2007-12-04 03:22:11 as
	Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. [My Copy] J Mol Biol, Vol. 294, No. 5. (Dec 1999), pp. 1351-1362. by N. Blom, S. Gammeltoft, S. Brunak posted to article-nar article-predikin binding computer consensus eukaryotic glycosylation models molecular motifs neural nuclear of phosphorylation phylogeny protein reproducibility results sensitivity sequence serine sites specificity structure substrate tertiary threonine trans-activators tyrosine amino-acid cell animal phosphoprotein network by neils on 2007-12-04 03:22:11 as

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bioinformatics	196
protein	149
genomics	139
structure	130
kinase	127
prediction	111
phosphorylation	101
interaction	97
software	96
database	86
protein-protein	86
sequence	83
analysis	82
proteomics	80
bacteria	76
review	69
evolution	67
statistics	63
archaea	58
human	54
article-predikin	51
microarray	46
network	45
genome	44
metagenomics	38
data	37
sequencing	36
webserver	36
specificity	35
peptide	34
domain	33
substrate	33
mass-spec	32
genetics	31
phylogeny	30
binding	29
expression	29
virus	29
article-pka-pkg	25
function	25
regulation	25
signal	25
annotation	24
enzyme	24
amino-acid	23
pathogen	23
r-project	23
molecular	22
psychrophily	21
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complex	20
crystallography	20
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alignment	19
gene	19
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next-generation	19
transcriptomics	19
yeast	19
animal	18
ecology	18
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cell	16
membrane	16
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classification	14
integration	14
modelling	14
phosphoprotein	14
plant	14
protein-serine-threonine	14
sites	14
docking	13
homology	13
interface	13
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models	13
pi3k	13
activation	12
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camp	12
cancer	12
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methods	12
microbiology	12
prokaryote	12
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phosphatase	10
rna	10
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affymetrix	9
algorithm	9
cgmp	9
differential	9
for-thuber	9
metabolomics	9
motifs	9
proteome	9
recruitment	9
screen	9
subcellular	9
svm	9
visualisation	9
akap	8
bird	8
conformation	8
conservation	8
curation	8
data-mining	8
design	8
drug	8
eukarya	8
microbiome	8
mutation	8
nmr	8
paracoccus	8
pathways	8
plasmodium	8
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ribosome	8
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report	4
reproducibility	4
selection	4
semantic	4
simulation	4
single-molecule	4
spectroscopy	4
src	4
streptococcus	4
techniques	4
tools	4
topology	4
triphosphate	4
tyrosine	4
virulence	4
wiki	4
2d-dige	3
affinity	3
agriculture	3
api	3
apis	3
autism	3
bacillus	3
base	3
beta-adrenergic	3
biochemical	3
biofilm	3
biogenesis	3
biophysics	3
brain	3
career	3
cassette	3
chemical	3
clinical	3
cluster	3
collaboration	3
computational-biology	3
contact	3
correspondence	3
cultured	3
degradation	3
dimerization	3
dinosaur	3
diversity	3
dna-binding	3
drosophila	3
dynamics	3
ecoli	3
electron-microscopy	3
errors	3
fish	3
graphics	3
heat-shock	3
helicobacter	3
helix	3
hgt	3
high-throughput	3
humour	3
image	3
impact-factor	3
import	3
inbred	3
introduction	3
isoenzymes	3
isoforms	3
lims	3
linear	3
macrophage	3
malaria	3
methanococcus	3
migration	3
mouse	3
mutagenesis	3
nitric	3
normalization	3
npc	3
of	3
ontology	3
orfan	3
orthology	3
phylogenetics	3
physiology	3
pipeline	3
population	3
post-translational	3
probability	3
processing	3
programming	3
psychrobacter	3
public	3
publishing	3
pyrosequencing	3
relationship	3
response	3
results	3
retrieval	3
roc	3
saccharomyces	3
sensitivity	3
serine-protease	3
signature	3
streptomyces	3
sulfolobus	3
synthesis	3
systems-biology	3
tag	3
target	3
temperature	3
thermus	3
tissue	3
transfer	3
translation	3
transport	3
ubiquitin	3
variation	3
water	3
xml	3
adaptor	2
aethiops	2
agents	2
ajax	2
algae	2
anchor	2
anthropology	2
antibody	2
arginine	2
artificial	2
arxiv	2
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avian	2
bayesian	2
bee	2
behaviour	2
biomart	2
biotechnology	2
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bos-taurus	2
breast-cancer	2
c57bl	2
cardiac	2
carrier	2
cdk	2
centrality	2
cercopithecus	2
cerevisiae	2
chaperone	2
checkpoint	2
chip	2
citations	2
climate	2
cloning	2
cloud-computing	2
coevolution	2
cold	2
coli	2
colorectal	2
complementary	2
complex-i	2
compounds	2
computer-assisted	2
consensus	2
context	2
control	2
co-occurrence	2
copy-number	2
correlation	2
covariance	2
cow	2
cryo-em	2
curve	2
cycle	2
dengue	2
detection	2
development	2
disulphide	2
dog	2
duplication	2
ebi	2
electron	2
electrophoresis	2
electrophysiology	2
embryo	2
endoplasmic	2
enterococcus	2
escherichia	2
evaluation	2
extracellular	2
feature	2
female	2
fragments	2
framework	2
friendfeed	2
global	2
glycosylation	2
gmp-dependent	2
google	2
g-protein-coupled	2
graph	2
haloferax	2
histone	2
history	2
horizontal	2
hupo	2
identification	2
ignicoccus	2
illumina	2
immunology	2
industry	2
infrastructure	2
insect	2
intelligence	2
intracellular	2
introns	2
in-vivo	2
ismb	2
javascript	2
journals	2
lead	2
leucine	2
lgt	2
lichen	2
lie	2
ligases	2
lrr	2
lymphocyte	2
maldi	2
mammal	2
matrix	2
md	2
mechanism	2
medicine	2
metadata	2
metalloprotein	2
methylotrophy	2
mobile	2
model	2
modification	2
ms-ms	2
multiprotein	2
muscle	2
myxobacteria	2
neural	2
neural-network	2
nitrous	2
nnr	2
obesity	2
operon	2
optimisation	2
organisation	2
organism	2
osmotic	2
p21-activated	2
pagerank	2
pattern	2
pdz	2
peptidase	2
peroxidase	2
personalised	2
phosphopeptide	2
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pichia	2
platypus	2
polo	2
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predikin	2
pressure	2
probe	2
promoter	2
protease	2
protein-ligand	2
proteins	2
psi	2
psychology	2
pwm	2
python	2
reaction	2
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refinement	2
region	2
repair	2
repressor	2
reticulum	2
rhodopsin	2
rice	2
ruby	2
salivary	2
salmon	2
sciences	2
screening	2
selenocysteine	2
sensing	2
serpin	2
sh3	2
short-read	2
similarity	2
site-directed	2
snake	2
solubility	2
sorting	2
squid	2
structural	2
superfamily	2
survival	2
synthase	2
targeting	2
t-cell	2
teaching	2
threonine	2
tomography	2
topic	2
toxin	2
transducing	2
translocation	2
t-rex	2
tumor	2
twitter	2
ubiquitin-protein	2
vertebrate	2
virtual	2
workflow	2
xanthomonas	2
14-3-3	1
145-trisphosphate	1
16s	1
2008	1
23andme	1
2d-page	1
454	1
90-kda	1
abiogenesis	1
abl	1
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arrayexpress	1
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as	1
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astrobiology	1
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auc	1
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blood	1
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book	1
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bull	1
business	1
c1	1
c-552	1
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calcium-calmodulin-dependent	1
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cd98	1
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circadian	1
circular	1
citrate	1
c-jun	1
class-i	1
class-ii	1
cleavage	1
clic	1
clinical_trial	1
clock	1
cm552	1
cms	1
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cnv	1
codon	1
coenzyme	1
coexpression	1
colon	1
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colwellia	1
communication	1
complexity	1
compression	1
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controlled	1
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copy	1
core	1
cost	1
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culture	1
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cyclin	1
cyclin-dependent	1
cysteine	1
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cytoskeletal	1
cytosol	1
dal5	1
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decision-tree	1
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dgs	1
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dipz	1
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encode	1
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engineering	1
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environmental	1
envz	1
enyzme	1
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epithelial	1
epr	1
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ethylene	1
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experimental	1
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factor	1
factor-2	1
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fkbp	1
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fluid	1
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foldx	1
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freezing	1
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gecko	1
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geo	1
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glucose	1
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godwit	1
gos	1
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histidine-kinase	1
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insulin	1
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integron	1
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irs	1
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kernel	1
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koryarchaeum	1
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lactase	1
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lake-vostok	1
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lasso	1
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leptospira	1
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ligand-gated	1
limosa	1
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linear-model	1
linkage	1
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liver	1
lod	1
loop	1
lsid	1
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mapk	1
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mark	1
markup	1
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masking	1
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medline	1
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mites	1
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motion	1
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ms	1
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myod	1
names	1
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nitrosomonas	1
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nucleoporin	1
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number	1
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ogt	1
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opsin	1
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pubmed	1
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rfam	1
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rhodothermus	1
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rigid-body	1
rnai	1
rnasep	1
roc_curve	1
rosetta	1
rpon	1
s6	1
saac	1
saccharomycetales	1
salmonella	1
sars	1
sativa	1
scent	1
schema	1
schistosoma	1
scop	1
score	1
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scrubwren	1
sea-slug	1
sec	1
secis	1
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sh2	1
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silac	1
silica	1
single-cell	1
situ	1
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sm	1
smad7	1
small	1
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smooth	1
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wwpdb	1
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zebrafinch	1
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zimmer	1
zipper	1
znf	1
zoarces	1
zymomonas	1

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