neils's interaction [97 articles] Export

Recent papers added to neils's library classified by the tag interaction. You can also see everyone's interaction.

	hPDI: a database of experimental human protein-DNA interactions [My Copy] Bioinformatics (9 November 2009), btp631. by Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian posted to protein-dna interaction human experimental database by neils on 2009-11-10 22:34:00 as along with 2 people roys frohike
	MINT, the molecular interaction database: 2009 update [My Copy] Nucl. Acids Res. (6 November 2009), gkp983. by Arnaud Ceol, Andrew Chatr Aryamontri, Luana Licata, et al.Daniele Peluso, Leonardo Briganti, Livia Perfetto, Luisa Castagnoli, Gianni Cesareni posted to protein-protein mint interaction database by neils on 2009-11-08 22:19:35 as along with 2 people aceol brianb
	STITCH 2: an interaction network database for small molecules and proteins [My Copy] Nucl. Acids Res. (6 November 2009), gkp937. by Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, et al.Monica Campillos, Christian von Mering, Lars J. Jensen, Andreas Beyer, Peer Bork posted to stitch protein-protein protein-ligand network interaction database by neils on 2009-11-08 22:18:17 as along with 1 person Yanno
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to protein-protein prediction machine-learning interface interaction energy by neils on 2009-11-02 04:17:49 as along with 6 people and 1 group sillitoe apaydin kshameer zwang phoenixzxl higueruelo Orengo Group Journal Picks
	Predictive rule inference for epistatic interaction detection in genome-wide association studies [My Copy] Bioinformatics (30 October 2009), btp622. by Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu posted to snp prediction interaction gwa epistasis by neils on 2009-11-02 04:16:37 as
	Predicting protein-protein binding sites in membrane proteins. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 312. by Andrew J. Bordner posted to random-forest protein-protein prediction membrane interaction by neils on 2009-09-25 00:17:27 as along with 4 people and 1 group sillitoe hryk niallhaslam reyez Orengo Group Journal Picks
	Complex discovery from weighted PPI networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1891-1897. by Guimei Liu, Limsoon Wong, Hon Nian N. Chua posted to discovery interaction network protein-protein statistics weights by neils on 2009-07-20 00:22:23 as along with 7 people kgutwin kiekyon zwang friendpine poirel tmmurali grahamc
	ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs [My Copy] Bioinformatics (14 July 2009), btp424. by J. A. Encinar, G. Fernandez-Ballester, I. E. Sanchez, et al.E. Hurtado-Gomez, F. Stricher, P. Beltrao, L. Serrano posted to database domain interaction linear module motifs protein-protein by neils on 2009-07-16 00:52:54 as along with 1 person robfsouza
	Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity [My Copy] Cell, Vol. 138, No. 1. (2009) by Tanya Vavouri, Jennifer I. Semple, Rosa G. Verdugo, Ben Lehner posted to disorder dosage gene humdisease interaction protein-protein toxicity by neils on 2009-07-16 00:39:04 as
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to complex evolution interaction network protein-protein by neils on 2009-07-14 00:25:11 as along with 11 people and 1 group carlk chica saket dakelley tomhebbron davidalee leemond31 druvus kiekyon tmmurali grahamc Orengo Group Journal Picks
	Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 288. by Stefanie De Bodt, Sebastian Proost, Klaas Vandepoele, Pierre Rouze, Yves Van de Peer posted to arabidopsis data integration interaction plant prediction protein-protein by neils on 2009-06-30 00:12:25 as along with 2 people kiekyon barriot
	High-sensitivity real-time imaging of dual protein-protein interactions in living subjects using multicolor luciferases. [My Copy] PloS one, Vol. 4, No. 6. (12 June 2009), e5868. by N. Hida, M. Awais, M. Takeuchi, et al.N. Ueno, M. Tashiro, C. Takagi, T. Singh, M. Hayashi, Y. Ohmiya, T. Ozawa posted to binary imaging interaction luciferase microscopy protein-protein real-time by neils on 2009-06-13 04:41:13 as along with 1 person guhjy
	SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W109-114. by Pablo Minguez, Stefan Gotz, David Montaner, Fatima Al-Shahrour, Joaquin Dopazo posted to analysis interaction network protein-protein software statistics webserver by neils on 2009-05-21 00:48:47 as along with 9 people sgoetz guhjy yaredo Scis0000002 kiekyon daforerog renatomilani sjcockell kshameer
	Progress and challenges in predicting protein-protein interaction sites [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 233-246. by Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress posted to interaction interface prediction protein-protein review by neils on 2009-04-22 00:32:06 as along with 9 people and 1 group flbarroso biomcgary nanonan apaydin marti reyez barry renatomilani iakes McCammon
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to helix interaction membrane prediction protein protein-protein by neils on 2009-04-09 00:04:32 as along with 6 people xdeupi ChanghuiYan george_g friendpine zwang phoenixzxl
	Evolutionary conservation in multiple faces of protein interaction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 1. (2009), pp. 14-25. by Yoon S. Choi, Jae-Seong Yang, Yonghwan Choi, Sung H. Ryu, Sanguk Kim posted to conservation interaction interface prediction protein-protein structure by neils on 2009-04-08 00:55:01 as along with 2 people and 1 group AliC paulschlesinger Orengo Group Journal Picks
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted to interaction peptide prediction protein-protein structure surface by neils on 2009-03-30 02:27:13 as along with 8 people and 1 group dfdong higueruelo pablocarb nickolay phoenixzxl idoerg sobolevnrm paulschlesinger baker-group
	Structure Based Prediction of the S. cerevisiae SH3-Ligand Interactions. [My Copy] Journal of molecular biology (23 March 2009) by Gregorio Fernandez-Ballester, Pedro Beltrao, Jose Manuel M. Gonzalez, et al.Young-Hwa H. Song, Matthias Wilmanns, Alfonso Valencia, Luis Serrano posted to homology interaction modelling prediction protein-protein sh3 structure by neils on 2009-03-29 12:51:13 as along with 1 person kgutwin
	Crystal structure of AFV1-102, a protein from the acidianus filamentous virus 1. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 4. (10 February 2009), pp. 845-849. by Jenny Keller, Nicolas Leulliot, Bruno Collinet, et al.Valerie Campanacci, Christian Cambillau, David Pranghisvilli, Herman van V. Tilbeurgh posted to archaea crystallography interaction protein protein-protein structural-genomics structure virus by neils on 2009-03-26 22:30:52 as
	Essential Core of Protein−Protein Interaction Network in Escherichia coli [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Chen-Ching Lin, Hsueh-Fen Juan, Jen-Tsung Hsiang, Yih-Chii Hwang, Hirotada Mori, Hsuan-Cheng Huang posted to ecoli interaction network protein-protein by neils on 2009-03-15 11:01:00 as along with 1 person sergiun
	A feature-based approach to modeling protein-protein interaction hot spots [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), pp. 2672-2687. by Kyu-Il Cho, Dongsup Kim, Doheon Lee posted to feature interaction modelling prediction protein-protein by neils on 2009-03-10 22:30:40 as along with 5 people pablocarb higueruelo flbarroso phoenixzxl zwang
	Disease candidate gene identification and prioritization using protein interaction networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 73. by Jing Chen, Bruce Aronow, Anil Jegga posted to analysis candidate disease interaction network protein-protein by neils on 2009-03-03 00:59:47 as along with 12 people and 1 group carlk zufar guhjy jfr daforerog saket provero mitko barriot grahamc renatomilani rjazwiec Bioinformatics
	A Method for Investigating Protein−Protein Interactions Related to Salmonella Typhimurium Pathogenesis [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Saiful M. Chowdhury, Liang Shi, Hyunjin Yoon, et al.Charles Ansong, Leah M. Rommereim, Angela D. Norbeck, Kenneth J. Auberry, Ronald J. Moore, Joshua N. Adkins, Fred Heffron, Richard D. Smith posted to interaction pathogen protein-protein proteomics salmonella tap by neils on 2009-02-11 23:08:31 as
	Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000278. by Mile Šikić, Sanja Tomić, Kristian Vlahoviček posted to interaction prediction protein-protein random-forest sequence structure by neils on 2009-01-30 01:49:03 as along with 7 people and 2 groups roys svozil marti barry grahamc higueruelo kshameer structural_bioinformatics McCammon
	ProtorP: A Protein-Protein Interaction Analysis Server [My Copy] Bioinformatics (11 November 2008), btn584. by Christopher Reynolds, David Damerell, Susan Jones posted to analysis interaction protein-protein structure webserver by neils on 2009-01-29 23:47:59 as along with 7 people and 1 group idoerg bicko barry chad_davis behindtherabbit kshameer hugowill structural_bioinformatics
	Prediction of protein-protein interaction types using association rule based classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Sung H. Park, Jose Reyes, David Gilbert, Ji W. Kim, Sangsoo Kim posted to bioinformatics classification interaction prediction protein-protein by neils on 2009-01-28 23:18:46 as along with 4 people anf renatomilani grahamc higueruelo
	Literature-curated protein interaction datasets [My Copy] Nature Methods, Vol. 6, No. 1. (30 December 2008), pp. 39-46. by Michael E. Cusick, Haiyuan Yu, Alex Smolyar, et al.Kavitha Venkatesan, Anne-Ruxandra Carvunis, Nicolas Simonis, Jean-François Rual, Heather Borick, Pascal Braun, Matija Dreze, Jean Vandenhaute, Mary Galli, Junshi Yazaki, David E. Hill, Joseph R. Ecker, Frederick P. Roth, Marc Vidal posted to curation dataset interaction literature protein-protein reliability statistics by neils on 2009-01-28 01:48:51 as along with 15 people fgibson allysonlister carlk aramesh2 ocs reyez kshameer daforerog lesikv sjcockell dullhunk icq242500260 guhjy zwang hmk
	GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction [My Copy] Source Code for Biology and Medicine, Vol. 4, No. 1. (2009) by Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje posted to bioinformatics dataset interaction prediction protein-protein web by neils on 2009-01-26 23:11:26 as
	Pellino Proteins Contain a Cryptic FHA Domain that Mediates Interaction with Phosphorylated IRAK1 [My Copy] Vol. 16, No. 12. (12 December 2008), pp. 1806-1816. by Chun-Chi Lin, Yu-San Huoh, Karl R. Schmitz, Liselotte E. Jensen, Kathryn M. Ferguson posted to domain fha interaction irak pellino phosphorylation protein-protein signaling by neils on 2008-12-11 01:39:47 as
	Prediction of Protein-Protein Interface Sequence Diversity Using Flexible Backbone Computational Protein Design [My Copy] Vol. 16, No. 12. (12 December 2008), pp. 1777-1788. by Elisabeth L. Humphris, Tanja Kortemme posted to backbone bioinformatics interaction interface prediction protein-protein proteins by neils on 2008-12-11 01:38:19 as
	Detection of Functionally Important Regions in Hypothetical Proteins of Known Structure [My Copy] Vol. 16, No. 12. (12 December 2008), pp. 1755-1763. by Guy Nimrod, Maya Schushan, David M. Steinberg, Nir Ben-Tal posted to bioinformatics function interaction prediction protein-protein proteins by neils on 2008-12-11 01:35:57 as
	Ecto-Phosphorylation of CD98 Regulates Cell-Cell Interactions [My Copy] PLoS ONE, Vol. 3, No. 12. (December 2008), e3895. by Hang T. Nguyen, Guillaume Dalmasso, Yutao Yan, Tracy S. Obertone, Shanthi V. Sitaraman, Didier Merlin posted to cd98 cell interaction phosphorylation by neils on 2008-12-10 00:23:05 as
	SCOPPI: a structural classification of protein-protein interfaces [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (2006), pp. D310-314. by Christof Winter, Andreas Henschel, Wan K. Kim, Michael Schroeder posted to bioinformatics database domain interaction protein-protein scop structure by neils on 2008-11-20 02:59:00 as
	Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species [My Copy] Nucl. Acids Res. (4 October 2008), gkn619. by Kiyoung Lee, Han-Yu Chuang, Andreas Beyer, et al.Min-Kyung Sung, Won-Ki Huh, Bonghee Lee, Trey Ideker posted to bioinformatics interaction localisation network prediction protein-protein subcellular by neils on 2008-11-13 10:50:54 as along with 5 people carlk brianb grahamc giovenko ptrobajo
	MPI-LIT: A literature-curated dataset of microbial binary protein-protein interactions. [My Copy] Bioinformatics (Oxford, England) (11 September 2008) by Seesandra V V. Rajagopala, Johannes Goll, Nd Deve D. Gowda, et al.Kumar C C. Sunil, Björn Titz, Arnab Mukherjee, Sharmilla S S. Mary, Naresh Raviswaran, Chetan S S. Poojari, Srinivas Ramachandra, Svetlana Shtivelband, Stephen M M. Blazie, Julia Hofmann, Peter Uetz posted to binary curation database interaction microbial protein-protein by neils on 2008-11-06 00:58:47 as along with 3 people barriot bicko higueruelo
	3did Update: domain-domain and peptide-mediated interactions of known 3D structure. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (25 January 2009), gkn690. by Amelie Stein, Alejandro Panjkovich, Patrick Aloy posted to curation database domain interaction peptide protein-protein structure by neils on 2008-10-30 23:14:11 as along with 4 people lptolik higueruelo zdai barriot
	Identification of hot-spot residues in protein-protein interactions by computational docking. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Solène Grosdidier, Juan Fernández-Recio posted to bioinformatics docking interaction prediction protein-protein residue by neils on 2008-10-21 10:09:22 as along with 6 people ubcg08l pablocarb bicko grahamc higueruelo i000
	Transducer Binding Establishes Localized Interactions to Tune Sensory Rhodopsin II [My Copy] Structure, Vol. 16, No. 8. (06 August 2008), pp. 1206-1213. by D. Cisneros, L. Oberbarnscheidt, A. Pannier, et al.J. Klare, J. Helenius, M. Engelhard, F. Oesterhelt, D. Muller posted to archaea interaction natronomonas protein-protein rhodopsin single-molecule by neils on 2008-10-08 02:43:20 as
	PiSite: a database of protein interaction sites using multiple binding states in the PDB. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (4 January 2009), gkn659. by Miho Higurashi, Takashi Ishida, Kengo Kinoshita posted to binding database interaction pdb protein-protein sites by neils on 2008-10-05 10:09:38 as along with 4 people arifor semin robfsouza kintoki
	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2608-2614. by Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost posted to bioinformatics interaction microarray prediction protein-protein svm by neils on 2008-10-04 01:44:54 as along with 12 people jperkins kiekyon jfr cgaugain guhjy saket iris_2001 pengchy natstreet grahamc phoenixzxl renatomilani
	Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication [My Copy] PLoS ONE, Vol. 3, No. 10. (1 October 2008), e3299. by Ji'an Pan, Xiaoxue Peng, Yajing Gao, et al.Zhilin Li, Xiaolu Lu, Yingzhao Chen, Musarat Ishaq, Dan Liu, Marta L. Dediego, Luis Enjuanes, Deyin Guo posted to genomics interaction protein-protein sars virus by neils on 2008-10-02 00:58:34 as along with 1 person cabbagesofdoom
	The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains [My Copy] BMC Genomics, Vol. 9 (01 October 2008), 452. by Siyuan Ren, Guang Yang, Youyu He, Yiguo Wang, Yixue Li, Zhengjun Chen posted to conservation domain interaction linear motif protein-protein by neils on 2008-10-02 00:53:33 as along with 2 people hryk barriot
	Protein Phosphatase-1 Is Targeted to DNA Polymerase δ via an Interaction with the p68 Subunit [My Copy] Biochemistry (1 October 2008) by Yan Gao, Yajing Zhou, Bin Xie, et al.Sufang Zhang, Amal Rahmeh, Hua-Shan Huang, Marietta Y. Lee, Ernest Y. Lee posted to interaction phosphatase polymerase protein-protein by neils on 2008-10-01 11:12:30 as
	iRefIndex: A consolidated protein interaction database with provenance [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Sabry Razick, George Magklaras, Ian Donaldson posted to bioinformatics database interaction protein-protein by neils on 2008-09-30 08:34:23 as along with 3 people guhjy grahamc barriot
	Modifying the DPClus algorithm for identifying protein complexes based on new topological structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen posted to bioinformatics complex interaction prediction protein-protein topology by neils on 2008-09-25 02:20:03 as along with 2 people diamantis chad_davis
	A combinatorial score to distinguish biological and nonbiological protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64 (2006), pp. 68-78. by Shiyong Liu, Qingliang Li, Luhua Lai posted to bioinformatics contact interaction interface prediction protein-protein by neils on 2008-09-24 06:13:00 as
	Interspecies data mining to predict novel ING-protein interactions in human [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Paul Gordon, Mohamed Soliman, Pinaki Bose, Quang Trinh, Christoph Sensen, Karl Riabowol posted to bioinformatics data-mining interaction prediction protein-protein by neils on 2008-09-19 01:21:50 as
	Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (15 June 2007), e117. by Zengjian Hu, Donnell Bowen, William M. Southerland, et al. Del, Yongping Pan, Ruth Nussinov, Buyong Ma posted to analysis dhfr interaction network protein structure by neils on 2008-09-17 07:33:17 as
	The structural basis for an essential subunit interaction in influenza virus RNA polymerase [My Copy] Nature, Vol. 454, No. 7208. (27 July 2008), pp. 1127-1131. by Eiji Obayashi, Hisashi Yoshida, Fumihiro Kawai, et al.Naoya Shibayama, Atsushi Kawaguchi, Kyosuke Nagata, Jeremy R. H. Tame, Sam-Yong Park posted to interaction polymerase protein-protein subunit virus by neils on 2008-08-28 00:47:44 as along with 1 person dfdong
	Predicting PDZ domain-peptide interactions from primary sequences [My Copy] Nat Biotech, Vol. 26 (2008), pp. 1041-1045. by Jiunn R. Chen, Bryan H. Chang, John E. Allen, Michael A. Stiffler, Gavin Macbeath posted to bioinformatics domain interaction pdz peptide prediction protein-protein by neils on 2008-08-19 00:19:29 as

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bioinformatics	196
protein	152
genomics	143
structure	132
kinase	129
prediction	113
phosphorylation	101
interaction	97
software	96
database	90
protein-protein	86
analysis	84
sequence	83
proteomics	80
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review	71
evolution	67
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metagenomics	38
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peptide	34
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zymomonas	1

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