neils's microarray [46 articles] Export

Recent papers added to neils's library classified by the tag microarray. You can also see everyone's microarray.

	Robust-Linear-Model Normalization To Reduce Technical Variability in Functional Protein Microarrays [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Andrea Sboner, Alexander Karpikov, Gengxin Chen, et al.Michael Smith, Mattoon Dawn, Lisa Freeman-Cook, Barry Schweitzer, Mark B. Gerstein posted to statistics protein normalization microarray linear-model by neils on 2009-11-09 22:19:47 as
	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan Garibaldi, Natalio Krasnogor posted to web statistics software microarray data-mining analysis by neils on 2009-10-28 23:00:22 as along with 1 person heliopais
	Exon Array Analyzer: a web interface for Affymetrix exon array analysis [My Copy] Bioinformatics (12 October 2009), btp577. by Pascal Gellert, Shizuka Uchida, Thomas Braun posted to webserver microarray exon analysis affymetrix by neils on 2009-10-25 01:33:18 as
	Serrated carcinomas form a subclass of colorectal cancer with distinct molecular basis [My Copy] Oncogene, Vol. 26, No. 2. (03 July 2006), pp. 312-320. by P. Laiho, A. Kokko, S. Vanharanta, et al.R. Salovaara, H. Sammalkorpi, H. Jarvinen, J. P. Mecklin, T. J. Karttunen, K. Tuppurainen, V. Davalos, S. Schwartz, D. Arango, M. J. Makinen, L. A. Aaltonen posted to transcriptomics serrated microarray colorectal classification carcinoma cancer by neils on 2009-09-25 02:59:11 as along with 1 person Terkko
	RCMAT: a regularized covariance matrix approach to testing gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 300. by Phillip Yates, Mark Reimers posted to statistics multivariate microarray dataset covariance by neils on 2009-09-22 00:21:20 as along with 5 people and 1 group dipenps rdiaz stajich heliopais barriot Mycology
	A first principles approach to differential expression in microarray data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 292. by Robert Rubin posted to statistics microarray expression differential by neils on 2009-09-21 00:41:29 as along with 5 people dswan brianb renatomilani rdiaz torfinnnome
	Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation [My Copy] BMC Genomics, Vol. 10, No. 1. (8 September 2009), 420. by Tamara A. Pavlidis, Pavlos Pavlidis, Tonis Timmusk posted to statistics microarray meta-analysis brain by neils on 2009-09-09 00:21:19 as along with 2 people sophiya ptrobajo
	Changes in transcript abundance relating to colony collapse disorder in honey bees (Apis mellifera) [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 35. (1 September 2009), pp. 14790-14795. by Reed M. Johnson, Jay D. Evans, Gene E. Robinson, May R. Berenbaum posted to virus microarray genomics colony-collapse-disorder bee apis by neils on 2009-08-25 01:59:13 as along with 1 person and 1 group stajich Mycology
	Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine [My Copy] PLoS ONE, Vol. 4, No. 8. (20 August 2009), e6669. by Marcus J. Claesson, Orla O'Sullivan, Qiong Wang, et al.Janne Nikkilä, Julian R. Marchesi, Hauke Smidt, Willem M. de Vos, R. Paul Ross, Paul W. O'Toole posted to pyrosequencing next-generation microbiology microarray metagenomics human gut comparison by neils on 2009-08-21 03:34:19 as
	GWAS meets microarray: are the results of genome-wide association studies and gene-expression profiling consistent? Prostate cancer as an example. [My Copy] PloS one, Vol. 4, No. 8. (4 August 2009), e6511. by Ivan P. Gorlov, Gary E. Gallick, Olga Y. Gorlova, Christopher Amos, Christopher J. Logothetis posted to cancer comparison gwa meta-analysis microarray statistics by neils on 2009-08-06 04:08:23 as along with 7 people and 1 group daforerog rdiaz pkonings frohike kimorley brianb kshameer Journal picks
	Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies [My Copy] Genome Biology, Vol. 10, No. 7. (2009), R77. by Essi Laajala, Tero Aittokallio, Riitta Lahesmaa, Laura Elo posted to affymetrix differential exon microarray splicing statistics by neils on 2009-07-17 00:39:38 as along with 3 people ericrpaquet lwaldron djkt
	WebArrayDB: cross-platform microarray data analysis and public data repository [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2425-2429. by Xiao-Qin Xia, Michael McClelland, Steffen Porwollik, Wenzhi Song, Xianling Cong, Yipeng Wang posted to analysis database microarray repository software webserver by neils on 2009-07-16 00:50:59 as along with 8 people ptrobajo lwaldron daforerog dswan natstreet guhjy brianb rschulz
	Detection of cancer with serum miRNAs on an oligonucleotide microarray. [My Copy] PloS one, Vol. 4, No. 7. (14 July 2009), e6229. by Michael J. Lodes, Marcelo Caraballo, Dominic Suciu, Sandra Munro, Amit Kumar, Brooke Anderson posted to cancer detection microarray mirna serum by neils on 2009-07-15 00:31:19 as along with 2 people guhjy ericrpaquet
	Using high-density exon arrays to profile gene expression in closely related species [My Copy] Nucl. Acids Res., Vol. 37, No. 12. (1 July 2009), e90. by Lan Lin, Song Liu, Heather Brockway, et al.Junhee Seok, Peng Jiang, Wing H. Wong, Yi Xing posted to comparison evolution exon expression microarray species by neils on 2009-07-14 00:26:10 as along with 1 person guhjy
	puma: a Bioconductor package for propagating uncertainty in microarray analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 211. by Richard Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil Lawrence, Magnus Rattray posted to bioconductor microarray r-project statistics uncertainty by neils on 2009-07-10 01:15:31 as along with 8 people and 1 group zufar rdiaz bertelsen Stew guhjy lwaldron brianb barriot Bioinformatics - CRUK
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to affymetrix comparison methods microarray normalization statistics by neils on 2009-07-09 00:51:06 as along with 22 people jperkins vplagnol brianb ipark-kaist shikin michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Digital Signal Processing Reveals Circadian Baseline Oscillation in Majority of Mammalian Genes [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (15 June 2007), e120. by Andrey A. Ptitsyn, Sanjin Zvonic, Jeffrey M. Gimble posted to circadian expression gene mammal microarray oscillation by neils on 2009-07-03 02:57:47 as along with 1 person GeeSharpMinor
	Gradient lasso for Cox proportional hazards model [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1775-1781. by Insuk Sohn, Jinseog Kim, Sin-Ho Jung, Changyi Park posted to hazard lasso microarray statistics survival by neils on 2009-07-03 01:01:45 as along with 2 people rdiaz reconnie
	A-MADMAN: annotation-based microarray data meta-analysis tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 June 2009), 201. by Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, et al.Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi posted to annotation meta-analysis microarray software web by neils on 2009-06-30 00:09:53 as along with 6 people and 1 group daforerog ptrobajo dswan bertelsen guhjy shikin Bioinformatics
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to affymetrix copy-number estimation microarray r-project statistics by neils on 2009-06-19 02:25:14 as along with 5 people shikin djkt pkonings rdiaz daforerog
	Assessing statistical significance in microarray experiments using the distance between microarrays. [My Copy] PloS one, Vol. 4, No. 6. (16 June 2009), e5838. by Douglas Hayden, Peter Lazar, David Schoenfeld, Inflammation and the Host Response to Injury Investigators posted to distance microarray r-project significance software statistics by neils on 2009-06-17 00:19:40 as along with 4 people guhjy rdiaz renatomilani arsyed
	Overestimation of alternative splicing caused by variable probe characteristics in exon arrays [My Copy] Nucl. Acids Res. (15 June 2009), gkp508. by Dimos Gaidatzis, Kirsten Jacobeit, Edward J. Oakeley, Michael B. Stadler posted to exon microarray probe splicing statistics variation by neils on 2009-06-17 00:15:36 as
	Importing ArrayExpress datasets into R/Bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2092-2094. by Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, et al.Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber posted to arrayexpress bioconductor database ebi microarray software r-project by neils on 2009-06-09 23:57:39 as along with 11 people and 2 groups daforerog jperkins shikin ealloza pkonings lwaldron dswan guhjy chrisamiller nuin phoenixzxl Orengo Group Journal Picks Bioinformatics
	Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 253. by Tristan Coram, Matthew Settles, Xianming Chen posted to affymetrix antisense microarray transcriptomics wheat by neils on 2009-05-31 02:32:39 as
	Differential splicing using whole-transcript microarrays. [My Copy] BMC bioinformatics, Vol. 10 (22 May 2009), 156. by M. D. Robinson, T. P. Speed posted to affymetrix analysis differential exon microarray splicing transcriptomics by neils on 2009-05-23 06:34:24 as along with 5 people and 1 group guhjy dswan lwaldron chrisamiller humburg Bioinformatics
	MIMAS 3.0 is a Multiomics Information Management and Annotation System. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 151. by Alexandre Gattiker, Leandro Hermida, Robin Liechti, et al.Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig posted to annotation data information management microarray software by neils on 2009-05-19 00:14:10 as along with 9 people frohike daforerog guhjy ddunbar druvus allysonlister AlexBateman kshameer barriot
	Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 221. by Joshua Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy Caudy posted to comparison expression gene illumina microarray next-generation quantitation sequencing by neils on 2009-05-12 23:59:36 as along with 8 people and 1 group heliopais GustavoLacerda GeeSharpMinor n00c TRHvidsten natstreet druvus dswan Bioinformatics
	Probe selection and expression index computation of affymetrix exon arrays. [My Copy] PLoS ONE, Vol. 1 (2006) by Y. Xing, K. Kapur, W. H. Wong posted to affymetrix analysis design exon microarray probe selection by neils on 2009-04-15 04:37:25 as along with 2 people jfr waszak
	Matching methods for observational microarray studies [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 904-909. by Ruth Heller, Elisabetta Manduchi, Dylan S. Small posted to comparative differential expression microarray statistics r-project by neils on 2009-03-25 21:50:29 as along with 3 people and 1 group jfr guhjy renatomilani Bioinformatics
	DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2026-2034. by D. P. Kreil, N. A. Karp, K. S. Lilley posted to 2d-dige electrophoresis expression microarray normalization proteomics statistics by neils on 2009-03-16 11:34:47 as along with 3 people and 1 group Fsilvestre urbo baldigroup ecotoxurbo
	A suite of Perl modules for handling microarray data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 8. (15 April 2008), pp. 1102-1103. by J. A. Morris, S. A. Gayther, I. J. Jacobs, C. Jones posted to bioinformatics microarray module perl software by neils on 2009-03-13 01:45:47 as along with 7 people isimpson daforerog guhjy wisdom_love brianb jfr AlexanderPico
	Papers on Normalization, Variable Selection, Classification, or Clustering of Microarray Data. [My Copy] Bioinformatics (Oxford, England) (10 February 2009) by David M M. Rocke, Trey Ideker, Olga Troyanskaya, John Quackenbush, Joaquin Dopazo posted to analysis editorial microarray statistics by neils on 2009-03-12 22:14:48 as along with 5 people rdiaz djkt dswan Zephyrus renatomilani
	ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses. [My Copy] BMC bioinformatics, Vol. 9 Suppl 6 (2008) by Todd H. Stokes, J. T. Torrance, Henry Li, May D. Wang posted to meta-analysis microarray public repository software wiki by neils on 2009-03-12 04:40:41 as along with 9 people daforerog PaoloRomano shikin jfr lptolik yas guhjy thomaskelder GeeSharpMinor
	Submission of microarray data to public repositories. [My Copy] PLoS Biol, Vol. 2, No. 9. (September 2004) by C. A. Ball, A. Brazma, H. Causton, et al.S. Chervitz, R. Edgar, P. Hingamp, J. C. Matese, H. Parkinson, J. Quackenbush, M. Ringwald, S. A. Sansone, G. Sherlock, P. Spellman, C. Stoeckert, Y. Tateno, R. Taylor, J. White, N. Winegarden posted to database microarray opinion public repository by neils on 2009-03-12 04:39:14 as along with 2 people daforerog hpiwowar
	GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. [My Copy] Bioinformatics (12 May 2007) by Sean Davis, Paul S S. Meltzer posted to bioconductor geo microarray software statistics r-project by neils on 2009-03-09 04:58:49 as along with 10 people and 1 group brianb dswan shikin guhjy jfr ugengma giovenko ablejec zhouyu bertelsen Bioinformatics
	Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours. [My Copy] BMC genomics, Vol. 10, No. 1. (26 February 2009), 93. by Ruping Sun, Xuping Fu, Yao Li, Yi Xie, Yumin Mao posted to analysis cancer candidate expression microarray microrna prostate by neils on 2009-03-03 01:02:32 as along with 5 people and 1 group mkiyer jfr heliopais natstreet provero microRNA
	Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by A. Annest, R. E. Bumgarner, A. E. Raftery, K. Y. Yeung posted to analysis bayesian microarray statistics survival by neils on 2009-03-03 01:00:37 as along with 4 people and 1 group jfr rdiaz fpattyn pkonings Bioinformatics
	Use of high-density tiling microarrays to globally identify mutations and elucidate mechanisms of drug resistance in Plasmodium falciparum [My Copy] Genome Biology, Vol. 10, No. 2. (2009) by Neekesh Dharia, Amar, Maria B. Cassera, et al.Scott Westenberger, Selina Bopp, Rich Eastman, David Plouffe, Serge Batalov, Daniel Park, Sarah Volkman, Dyann Wirth, Yingyao Zhou, David Fidock, Elizabeth Winzeler posted to drug microarray plasmodium resistance tiling by neils on 2009-02-15 02:45:06 as along with 4 people JoeDunckley tmmurali GeeSharpMinor behindtherabbit
	Outcome prediction based on microarray analysis: a critical perspective on methods. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Michalis Zervakis, Michalis E. Blazadonakis, Georgia Tsiliki, Vasiliki Danilatou, Manolis Tsiknakis, Dimitris Kafetzopoulos posted to analysis microarray prediction review statistics transcriptomics by neils on 2009-02-11 07:52:33 as along with 5 people TRHvidsten guhjy rdiaz renatomilani GeeSharpMinor
	The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 281-283. by Oliver S. Davis, Robert Plomin, Leonard C. Schalkwyk posted to association bioinformatics genomics microarray software statistics r-project by neils on 2009-01-15 23:47:28 as along with 7 people maren jfr Zephyrus daforerog guhjy djkt pkonings
	GPAT: retrieval of genomic annotation from large genomic position datasets. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by A. Krebs, M. Frontini, L. Tora posted to annotation chip genomics microarray software transcriptomics webserver by neils on 2008-12-16 03:04:37 as along with 5 people and 1 group guhjy abizar druvus ghattem fhalbrit SIMR bioinformatics
	Comprehensive analysis of affymetrix exon arrays using BioConductor. [My Copy] PLoS computational biology, Vol. 4, No. 2. (February 2008) by M. J. Okoniewski, C. J. Miller posted to affymetrix analysis bioconductor bioinformatics microarray software r-project by neils on 2008-12-02 04:49:49 as along with 7 people daveGerrard floatingpoint guhjy giovenko jfr chrisamiller eskay
	Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments. [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Stefano Parodi, Vito Pistoia, Marco Muselli posted to analysis curve differential expression microarray roc by neils on 2008-10-04 01:46:06 as along with 2 people guhjy barriot
	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2608-2614. by Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost posted to bioinformatics interaction microarray prediction protein-protein svm by neils on 2008-10-04 01:44:54 as along with 12 people jperkins kiekyon jfr cgaugain guhjy saket iris_2001 pengchy natstreet grahamc phoenixzxl renatomilani
	Apparently low reproducibility of true differential expression discoveries in microarray studies. [My Copy] Bioinformatics (Oxford, England) (16 July 2008) by Min Zhang, Chen Yao, Zheng Guo, et al.Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li posted to bioinformatics differential expression microarray reproducibility statistics by neils on 2008-09-06 10:48:09 as along with 8 people surajitray Zephyrus VGreiff jfr guhjy renatomilani GeeSharpMinor shigepong
	Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection [My Copy] BMC Genomics, Vol. 9 (25 June 2008), 301. by M. Navajas, A. Migeon, C. Alaux, et al. Ml, G. E. Robinson, J. D. Evans, S. Cros-Arteil, D. Crauser, Y. Le Conte posted to apis differential expression microarray mites parasitism bee by neils on 2008-06-26 02:18:23 as

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bioinformatics	196
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kinase	127
prediction	111
phosphorylation	101
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motion	1
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ms	1
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names	1
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negative	1
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nih	1
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nitrosomonas	1
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opsin	1
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rpon	1
s6	1
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zimmer	1
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znf	1
zoarces	1
zymomonas	1

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