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neils's network [20 articles]

Recent papers added to neils's library classified by the tag network. You can also see everyone's network.
  • Revealing unique properties of the ribosome using a network based analysis
    Nucl. Acids Res. (14 July 2008), gkn433.
    by Hilda David-Eden, Yael Mandel-Gutfreund
    posted to structure ribosome network modelling analysis by neils on 2008-07-15 04:45:46 as **
  • InteroPorc: Automated Inference of Highly Conserved Protein Interaction Networks.
    Bioinformatics (Oxford, England) (28 May 2008)
    by Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe C Aude, Pierre Legrain
    posted to network protein-protein prediction interaction bioinformatics by neils on 2008-07-07 14:13:12 as ** along with 3 people cerca renatomilani cabbagesofdoom
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to network topology protein-protein interaction bioinformatics by neils on 2008-07-04 00:29:49 as ** along with 2 people brianb renatomilani
  • The topology of the bacterial co-conserved protein network and its implications for predicting protein function
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Anis K Fard, Sonia Leach, Lawrence Hunter, Ryan Gill
    posted to topology protein-protein network interaction bacteria by neils on 2008-07-01 00:32:28 as **
  • PageRank without hyperlinks: reranking with PubMed related article networks for biomedical text retrieval
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jimmy Lin
    posted to network publication pubmed pagerank literature by neils on 2008-06-08 08:57:17 as ** along with 8 people and 1 group jyuh irenas chad_davis reyez msampson dullhunk Gaetan sobolevnrm baker-group
  • NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Nucl. Acids Res. (4 June 2008), gkn336.
    by Sylvain Brohee, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden
    posted to network webserver software pathways cluster bioinformatics by neils on 2008-06-05 02:58:50 as ** along with 2 people balicea brianb
  • Evolution and dynamics of protein interactions and networks
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Emmanuel D Levy, Jose B Pereira-Leal
    posted to network review protein-protein interaction evolution by neils on 2008-05-15 07:54:50 as ** along with 4 people marck paolomarcatili cabbagesofdoom jyuh
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to protein-protein prediction network interactome interaction human bioinformatics by neils on 2008-05-14 04:39:31 as ** along with 19 people dragonrez chad_davis Evangelia balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 zwang roys brianb friendpine Ema tmmurali phoenixzxl
  • NetworKIN: a resource for exploring cellular phosphorylation networks
    Nucl. Acids Res., Vol. 36 (2008), pp. D695-699.
    by Rune Linding, Lars J Jensen, Adrian Pasculescu, Marina Olhovsky, Karen Colwill, Peer Bork, Michael B Yaffe, Tony Pawson
    posted to network transduction signal prediction phosphorylation bioinformatics by neils on 2008-04-24 16:22:01 as **
  • Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, Trey Ideker
    posted to network complex genetics bioinformatics interaction prediction protein-protein by neils on 2008-04-21 03:13:52 as **
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to network bacteria evolution regulation by neils on 2008-04-17 04:43:16 as ** along with 17 people and 4 groups aheilbut chad_davis michaelbarton austin AbnerCYH hryk margaritis cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to bioinformatics interaction network protein-protein structure by neils on 2008-04-11 01:44:07 as ** along with 5 people zwang phoenixzxl paolomarcatili grahamc Evangelia
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Byung-Chul Lee, Keunwan Park, Dongsup Kim
    posted to residue amino-acid bioinformatics coevolution function network by neils on 2008-04-10 13:28:46 as ** along with 7 people and 2 groups wilbur friendpine barry sobolevnrm mingzhi penpen926 scienbox structural_bioinformatics baker-group
  • Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks
    Genome Biology, Vol. 9, No. 3. (2008)
    by Adam Kun, Balazs Papp, Eors Szathmary
    posted to network bioinformatics catalysis metabolomics by neils on 2008-03-10 22:26:04 as ** along with 3 people fernan grahamc roys
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to network editorial interaction protein-protein by neils on 2008-01-12 03:27:37 as ** along with 14 people and 1 group paolomarcatili Yanno jyuh tmmurali jfr balicea dullhunk mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai GeneGo
  • Evolutionary cores of domain co-occurrence networks.
    BMC Evol Biol, Vol. 5, No. 1. (2005)
    by S Wuchty, E Almaas
    posted to network domain co-occurrence evolution interaction by neils on 2008-01-10 05:36:03 as ** along with 2 people tny stajich
  • Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 535-545.
    by R Jansen, M Gerstein
    posted to network protein bioinformatics prediction by neils on 2007-12-10 00:09:13 as ** along with 5 people and 2 groups carlk okarsligil lfriedl wnpx grahamc kdl Bioinformatics
  • Computational methods for protein-protein interaction and their application.
    Curr Protein Pept Sci, Vol. 6, No. 5. (October 2005), pp. 443-449.
    by TL Shi, YX Li, YD Cai, KC Chou
    posted to network protein bioinformatics interaction prediction by neils on 2007-12-10 00:07:11 as ** along with 1 person bicko
  • Protein disorder prediction: implications for structural proteomics.
    Structure, Vol. 11, No. 11. (Nov 2003), pp. 1453-1459.
    by Rune Linding, Lars J Jensen, Francesca Diella, Peer Bork, Toby J Gibson, Robert B Russell
    posted to network ray ligand domain article-nar article-predikin circular computer conformation crystallography dichroism homology magnetic models neural protein proteome resonance sensitivity specificity spectroscopy src statistics temperature theoretical topic ultraviolet x-ray by neils on 2007-12-04 03:22:13 as **
  • Sequence and structure-based prediction of eukaryotic protein phosphorylation sites.
    J Mol Biol, Vol. 294, No. 5. (Dec 1999), pp. 1351-1362.
    by N Blom, S Gammeltoft, S Brunak
    posted to network phosphoprotein animal cell amino-acid article-nar article-predikin binding computer consensus eukaryotic glycosylation models molecular motifs neural nuclear of phosphorylation phylogeny protein reproducibility results sensitivity sequence serine sites specificity structure substrate tertiary threonine trans-activators tyrosine by neils on 2007-12-04 03:22:11 as **
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