neils's phosphorylation [101 articles] Export

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	PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update [My Copy] Nucl. Acids Res. (30 October 2009), gkp810. by Pawel Durek, Robert Schmidt, Joshua L. Heazlewood, et al.Alexandra Jones, Daniel MacLean, Axel Nagel, Birgit Kersten, Waltraud X. Schulze posted to plant phosphorylation database arabidopsis by neils on 2009-11-02 04:18:46 as
	Global Analysis of Cdk1 Substrate Phosphorylation Sites Provides Insights into Evolution [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1682-1686. by Liam J. Holt, Brian B. Tuch, Judit Villen, Alexander D. Johnson, Steven P. Gygi, David O. Morgan posted to phosphorylation kinase evolution cdk analysis by neils on 2009-09-25 00:17:38 as along with 5 people nzm brianb walshtp djkt jjray
	Increased Confidence in Large-Scale Phosphoproteomics Data by Complementary Mass Spectrometric Techniques and Matching of Phosphopeptide Data Sets [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Maria P. Alcolea, Oliver Kleiner, Pedro R. Cutillas posted to confidence dataset mass-spec phosphorylation proteomics statistics by neils on 2009-07-14 00:23:52 as
	Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. [My Copy] PLoS biology, Vol. 7, No. 6. (16 June 2009), e1000134. by Pedro Beltrao, Jonathan C. Trinidad, Dorothea Fiedler, et al.Assen Roguev, Wendell A. Lim, Kevan M. Shokat, Alma L. Burlingame, Nevan J. Krogan posted to evolution phosphorylation proteomics regulation transcription yeast by neils on 2009-06-25 07:19:49 as along with 14 people psique dakelley robfsouza emptyhb mingzhi leemond31 chica tmmurali biomcgary kiekyon bpcusack djkt renatomilani ematsen
	McsB Is a Protein Arginine Kinase That Phosphorylates and Inhibits the Heat-Shock Regulator CtsR [My Copy] Science, Vol. 324, No. 5932. (5 June 2009), pp. 1323-1327. by Jakob Fuhrmann, Andreas Schmidt, Silvia Spiess, et al.Anita Lehner, Kursad Turgay, Karl Mechtler, Emmanuelle Charpentier, Tim Clausen posted to arginine bacillus bacteria heat-shock kinase phosphorylation regulation by neils on 2009-06-05 00:57:02 as along with 1 person absterga
	Robust MS quantification method for phospho-peptides using 18O/16O labeling [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 141. by Claus Andersen, Stefano Gotta, Letizia Magnoni, Roberto Raggiaschi, Andreas Kremer, Georg Terstappen posted to isotope labelling ms-ms phosphorylation proteomics quantitation by neils on 2009-05-11 23:38:20 as along with 1 person renatomilani
	Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non-pathogenic Pseudomonas species. [My Copy] Proteomics (29 April 2009) by Ayshwarya Ravichandran, Naoyuki Sugiyama, Masaru Tomita, Sanjay Swarup, Yasushi Ishihama posted to bacteria kinase pathogenesis phosphorylation proteomics pseudomonas by neils on 2009-05-02 01:55:13 as
	Twice upon a time: PI3K's secret double life exposed [My Copy] Trends in Biochemical Sciences (17 April 2009) by Emilio Hirsch, Laura Braccini, Elisa Ciraolo, Fulvio Morello, Alessia Perino posted to function kinase phosphorylation pi3k review by neils on 2009-04-22 00:33:39 as
	Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction. [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 117. by Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther posted to phosphorylation prediction signature structure by neils on 2009-04-22 00:31:09 as along with 2 people oelemento reyez
	Ser/Thr/Tyr Protein Phosphorylation in the Archaeon <italic>Halobacterium salinarum</italic>—A Representative of the Third Domain of Life [My Copy] PLoS ONE, Vol. 4, No. 3. (10 March 2009), e4777. by Michalis Aivaliotis, Boris Macek, Florian Gnad, Peter Reichelt, Matthias Mann, Dieter Oesterhelt posted to archaea halobacterium kinase phosphorylation proteomics by neils on 2009-03-10 22:27:47 as
	Quantitative Phosphoproteomics of Tomato Mounting a Hypersensitive Response Reveals a Swift Suppression of Photosynthetic Activity and a Differential Role for Hsp90 Isoforms [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Iris J. Stulemeijer, Matthieu H. Joosten, Ole N. Jensen posted to hsp90 pathogen phosphorylation plant proteomics regulation response tomato by neils on 2009-02-01 07:29:00 as
	Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases [My Copy] Nucl. Acids Res. (12 January 2009), gkn1008. by Gil-Mi Ryu, Pamela Song, Kyu-Won Kim, Kyung-Soo Oh, Keun-Joon Park, Jong H. Kim posted to analysis genomics kinase phosphorylation protein sequence variation by neils on 2009-01-14 02:00:37 as along with 1 person renatomilani
	Phosphorylation Site Mapping of Endogenous Proteins: A Combined MS and Bioinformatics Approach [My Copy] Journal of Proteome Research, Vol. 0, No. 0. by Jeffrey M. Sundstrom, Christopher J. Sundstrom, Scott A. Sundstrom, et al.Patrice E. Fort, Richard, Thomas W. Gardner, David A. Antonetti posted to bioinformatics maldi mapping ms phosphorylation protein by neils on 2009-01-07 23:30:16 as
	Pellino Proteins Contain a Cryptic FHA Domain that Mediates Interaction with Phosphorylated IRAK1 [My Copy] Vol. 16, No. 12. (12 December 2008), pp. 1806-1816. by Chun-Chi Lin, Yu-San Huoh, Karl R. Schmitz, Liselotte E. Jensen, Kathryn M. Ferguson posted to domain fha interaction irak pellino phosphorylation protein-protein signaling by neils on 2008-12-11 01:39:47 as
	Ecto-Phosphorylation of CD98 Regulates Cell-Cell Interactions [My Copy] PLoS ONE, Vol. 3, No. 12. (December 2008), e3895. by Hang T. Nguyen, Guillaume Dalmasso, Yutao Yan, Tracy S. Obertone, Shanthi V. Sitaraman, Didier Merlin posted to cd98 cell interaction phosphorylation by neils on 2008-12-10 00:23:05 as
	PhosphoPep - a database of protein phosphorylation sites in model organisms [My Copy] Vol. 26, No. 12. (December 2008), pp. 1339-1340. by Bernd Bodenmiller, David Campbell, Bertran Gerrits, et al.Henry Lam, Marko Jovanovic, Paola Picotti, Ralph Schlapbach, Ruedi Aebersold posted to database model organism phosphorylation by neils on 2008-12-06 01:59:48 as
	Prediction of kinase-specific phosphorylation sites using Conditional Random Fields. [My Copy] Bioinformatics (Oxford, England) (20 October 2008) by Thanh Hai H. Dang, Koenraad Van V. Leemput, Alain Verschoren, Kris Laukens posted to bioinformatics kinase phosphorylation prediction random-fields specificity by neils on 2008-12-05 01:11:06 as along with 3 people gulkur coela guhjy
	Hypo-Phosphorylation of Salivary Peptidome as a Clue to the Molecular Pathogenesis of Autism Spectrum Disorders [My Copy] J. Proteome Res. (7 November 2008) by Massimo Castagnola, Irene Messana, Rosanna Inzitari, et al.Chiara Fanali, Tiziana Cabras, Alessandra Morelli, Anna M. Pecoraro, Giovanni Neri, Maria G. Torrioli, Fiorella Gurrieri posted to autism disease peptide phosphorylation proteomics salivary by neils on 2008-11-09 01:39:04 as
	Phosphorylation Analysis of Primary Human T Lymphocytes Using Sequential IMAC and Titanium Oxide Enrichment [My Copy] J. Proteome Res. (6 November 2008) by Montserrat Carrascal, David Ovelleiro, Vanessa Casas, Marina Gay, Joaquin Abian posted to human imac lymphocyte phosphorylation proteomics purification by neils on 2008-11-07 01:59:56 as
	P3DB: a plant protein phosphorylation database [My Copy] Nucl. Acids Res. (17 October 2008), gkn733. by Jianjiong Gao, Ganesh K. Agrawal, Jay J. Thelen, Dong Xu posted to database phosphorylation plant by neils on 2008-10-18 10:43:43 as along with 1 person lptolik
	Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 453-456. by Chris Bakal, Rune Linding, Flora Llense, et al.Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, Norbert Perrimon posted to high-throughput jnk network phosphorylation rnai screen by neils on 2008-10-16 23:56:26 as along with 5 people roys lptolik renatomilani zwang marck
	Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes [My Copy] Genome Biology, Vol. 9 (01 October 2008), R144. by Jos Boekhorst, Bas van Breukelen, Albert J. R. Heck, Berend Snel posted to conservation eukarya evolution phosphorylation proteomics by neils on 2008-10-02 00:46:42 as along with 2 people rsaito guhjy
	Linear motif atlas for phosphorylation-dependent signaling. [My Copy] Science signaling, Vol. 1, No. 35. (2 September 2008), ra2. by Martin Lee L. Miller, Lars Juhl J. Jensen, Francesca Diella, et al.Claus Jørgensen, Michele Tinti, Lei Li, Marilyn Hsiung, Sirlester A. Parker, Jennifer Bordeaux, Thomas Sicheritz-Ponten, Marina Olhovsky, Adrian Pasculescu, Jes Alexander, Stefan Knapp, Nikolaj Blom, Peer Bork, Shawn Li, Gianni Cesareni, Tony Pawson, Benjamin E. Turk, Michael B. Yaffe, Søren Brunak, Rune Linding posted to bioinformatics motifs netphorest phosphorylation prediction signaling by neils on 2008-09-16 04:24:47 as along with 5 people hryk nzm guhjy noraziz renatomilani
	Gain and loss of phosphorylation sites in human cancer [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i241-247. by Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney posted to cancer human mutation phosphorylation substrate by neils on 2008-08-11 00:38:19 as along with 3 people oelemento chunjean brianb
	Global analysis of protein phosphorylation in yeast [My Copy] Nature, Vol. 438, No. 7068., pp. 679-684. by Jason Ptacek, Geeta Devgan, Gregory Michaud, et al.Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R. Mccartney, Martin C. Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S. Mah, Lihao Meng, Michael J. R. Stark, David F. Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F. Predki, Michael Snyder posted to analysis phosphorylation proteomics yeast by neils on 2008-07-12 13:04:47 as along with 11 people and 1 group rsaito nedwards coela nzm MarcJungbluth tmmurali tuck balabu nickluscombe koller carlk EBI-regulation
	Immunomodulatory Effects of Polar Lichens on the Function of Macrophages In Vitro. [My Copy] Marine biotechnology (New York, N.Y.) (9 July 2008) by Hye-Sook S. Choi, Joung H. Yim, Hong K. Lee, Suhkneung Pyo posted to antarctic immunology lichen macrophage pathway phosphorylation by neils on 2008-07-11 00:20:06 as
	Non-functional phosphorylations? [My Copy] Trends in Biochemical Sciences, Vol. In Press, Corrected Proof by Gustav E. Lienhard posted to evolution hypothesis phosphorylation specificity by neils on 2008-07-06 07:44:14 as along with 1 person brianb
	Serine/threonine kinase (pk-1) is a component of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) very late gene transcription complex and it phosphorylates a 102kDa polypeptide of the complex. [My Copy] Virus research (21 June 2008) by Gourav Mishra, Pooja Chadha, Rakha H H. Das posted to autographa kinase phosphorylation virus complex by neils on 2008-06-27 00:37:33 as
	Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis [My Copy] J. Proteome Res. (19 June 2008) by Samuel H. Payne, Margaret Yau, Marcus B. Smolka, Stephen Tanner, Huilin Zhou, Vineet Bafna posted to bioinformatics ms-ms phosphorylation proteome scoring phosphoprotein by neils on 2008-06-19 09:14:49 as along with 2 people nedwards brianb
	Global Impact of Oncogenic Src on a Phosphotyrosine Proteome [My Copy] J. Proteome Res. (19 June 2008) by Weifeng Luo, Robbert J. Slebos, Salisha Hill, et al.Ming Li, Jan Brábek, Ramars Amanchy, Raghothama Chaerkady, Akhilesh Pandey, Amy-Joan L. Ham, Steven K. Hanks posted to oncogene phosphorylation proteomics src tyrosine by neils on 2008-06-19 09:13:38 as
	Phosphorylation of Protein Phosphatase 2Cζ by c-Jun NH2-Terminal Kinase at Ser92 Attenuates Its Phosphatase Activity [My Copy] Biochemistry (14 June 2008) by Kenjiro Awano, Kazutaka Amano, Yuko Nagaura, et al.Shin-Ichiro Kanno, Seishi Echigo, Shinri Tamura, Takayasu Kobayashi posted to activity c-jun phosphorylation phosphatase by neils on 2008-06-14 07:29:38 as
	PhosphoScan: A Probability-Based Method for Phosphorylation Site Prediction Using MS2/MS3 Pair Information [My Copy] J. Proteome Res. (13 June 2008) by Yunhu Wan, Diane Cripps, Stefani Thomas, et al.Patricia Campbell, Nicholas Ambulos, Ting Chen, Austin Yang posted to phosphorylation prediction probability mass-spec by neils on 2008-06-13 14:53:58 as
	PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSn Data [My Copy] J. Proteome Res. (11 June 2008) by Brian E. Ruttenberg, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert posted to analysis opensource phosphorylation software mass-spec by neils on 2008-06-11 13:05:16 as along with 3 people guhjy brianb woaizuqiu
	AMPK phosphorylation of raptor mediates a metabolic checkpoint. [My Copy] Molecular cell, Vol. 30, No. 2. (25 April 2008), pp. 214-226. by D. M. Gwinn, D. B. Shackelford, D. F. Egan, et al.M. M. Mihaylova, A. Mery, D. S. Vasquez, B. E. Turk, R. J. Shaw posted to amp-dependent checkpoint kinase phosphorylation raptor by neils on 2008-06-05 00:45:34 as along with 1 person guhjy
	Statistics of cellular signal transduction as a race to the nucleus by multiple random walkers in compartment/phosphorylation space [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16752-16757. by Ting Lu, Tongye Shen, Chenghang Zong, Jeff Hasty, Peter G. Wolynes posted to analysis phosphorylation scl signal transduction statistics by neils on 2008-05-28 01:07:14 as along with 1 person brianb
	Fibroblast growth factor receptor 2 phosphorylation on serine 779 couples to 14-3-3 and regulates cell survival and proliferation. [My Copy] Molecular and cellular biology, Vol. 28, No. 10. (May 2008), pp. 3372-3385. by A. Lonic, E. F. Barry, C. Quach, B. Kobe, N. Saunders, M. A. Guthridge posted to 14-3-3 fgfr fibroblast phosphorylation by neils on 2008-05-11 10:06:01 as
	Phosphorylation of Retinoblastoma Protein by Viral Protein with Cyclin-Dependent Kinase Function [My Copy] Science, Vol. 320, No. 5877. (9 May 2008), pp. 797-799. by Adam J. Hume, Jonathan S. Finkel, Jeremy P. Kamil, Donald M. Coen, Michael R. Culbertson, Robert F. Kalejta posted to cyclin-dependent kinase phosphorylation retinoblastoma virus by neils on 2008-05-09 00:33:27 as along with 4 people feltesm biomcgary mclarenv Petersarkies
	Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Naoyuki Sugiyama, Hirofumi Nakagami, Keiichi Mochida, et al.Arsalan Daudi, Masaru Tomita, Ken Shirasu, Yasushi Ishihama posted to arabidopsis phosphorylation proteomics tyrosine mass-spec by neils on 2008-05-06 23:39:40 as along with 5 people hryk coela kengg zwang Ema
	NetworKIN: a resource for exploring cellular phosphorylation networks [My Copy] Nucl. Acids Res., Vol. 36 (2008), pp. D695-699. by Rune Linding, Lars J. Jensen, Adrian Pasculescu, et al.Marina Olhovsky, Karen Colwill, Peer Bork, Michael B. Yaffe, Tony Pawson posted to bioinformatics phosphorylation prediction signal transduction network by neils on 2008-04-24 16:22:01 as
	Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641. by John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as along with 3 people chica mloewer Evangelia
	Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis [My Copy] J. Proteome Res. (24 April 2008) by Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, et al.Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J. Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, Heribert Hirt posted to arabidopsis chip peptide phosphorylation plant mass-spec protein by neils on 2008-04-24 06:46:05 as along with 3 people lptolik cjhall brianb
	Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications [My Copy] J. Proteome Res. (19 April 2008) by Xiuxia Du, Feng Yang, Nathan P. Manes, et al.David L. Stenoien, Matthew E. Monroe, Joshua N. Adkins, David J. States, Samuel O. Purvine, Ii Camp, Richard D. Smith posted to analysis phosphopeptides phosphorylation proteomics mass-spec statistics by neils on 2008-04-19 07:51:23 as along with 2 people brianb nedwards
	Global Changes in and Characterization of Specific Sites of Phosphorylation in Mouse and Human Histone H1 Isoforms upon CDK Inhibitor Treatment Using Mass Spectrometry [My Copy] J. Proteome Res. (17 April 2008) by Leesa J. Deterding, Maureen K. Bunger, Geoffrey C. Banks, Kenneth B. Tomer, Trevor K. Archer posted to cdk human inhibitor mouse phosphorylation mass-spec histone by neils on 2008-04-17 06:32:57 as
	Identification of Phosphorylation Sites in Protein Kinase A Substrates Using Artificial Neural Networks and Mass Spectrometry [My Copy] J. Proteome Res., Vol. 3, No. 3. (14 June 2004), pp. 426-433. by M. Hjerrild, A. Stensballe, T. E. Rasmussen, et al.C. B. Kofoed, N. Blom, T. Sicheritz-Ponten, M. R. Larsen, S. Brunak, O. N. Jensen, S. Gammeltoft posted to article-predikin bioinformatics netphosk neural-network phosphorylation prediction mass-spec by neils on 2008-04-16 04:05:30 as
	An online literature mining tool for protein phosphorylation. [My Copy] Bioinformatics (27 April 2006) by X Yuan, Z Z Z. Hu, H T T. Wu, et al.M Torii, M Narayanaswamy, K E E. Ravikumar, K Vijay-Shanker, C H H. Wu posted to bioinformatics phosphorylation software text-mining webserver by neils on 2008-04-07 01:57:56 as along with 2 people and 2 groups irenas yas dbk-lab T_lab
	Beyond the clause: extraction of phosphorylation information from medline abstracts. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by M. Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker posted to bioinformatics medline phosphorylation text-mining by neils on 2008-04-07 01:51:53 as along with 3 people Enro miguel zlu
	Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection. [My Copy] Nucleic Acids Res, Vol. 36, No. 4. (March 2008) by J. Wan, S. Kang, C. Tang, et al.J. Yan, Y. Ren, J. Liu, X. Gao, A. Banerjee, L. B. Ellis, T. Li posted to bioinformatics meta-prediction phosphorylation prediction by neils on 2008-03-10 07:23:25 as
	Advances in the analysis of protein phosphorylation. [My Copy] Journal of proteome research, Vol. 7, No. 5. (8 May 2008), pp. 1809-1818. by Alberto Paradela, Juan Pablo P. Albar posted to analysis methods phosphorylation proteomics review by neils on 2008-03-10 02:28:00 as along with 4 people shikin carlosjavierna coela guhjy
	Phosphoproteome Analysis of Drosophila melanogaster Embryos [My Copy] J. Proteome Res. (8 March 2008) by Bo Zhai, Vill&#xe9, Judit, Sean A. Beausoleil, Julian Mintseris, Steven P. Gygi posted to drosophila embryo phosphorylation proteomics phosphoprotein by neils on 2008-03-10 02:26:33 as
	In situ observation of protein phosphorylation by high-resolution NMR spectroscopy [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 3. (24 February 2008), pp. 321-329. by Philipp Selenko, Dominique P. Frueh, Simon J. Elsaesser, Wilhelm Haas, Steven P. Gygi, Gerhard Wagner posted to in-situ nmr phosphorylation spectroscopy xenopus by neils on 2008-03-06 23:27:25 as along with 1 person cafeandaman

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bioinformatics	196
protein	149
genomics	137
structure	130
kinase	127
prediction	111
phosphorylation	101
interaction	96
software	96
protein-protein	85
database	83
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peptide	34
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substrate	33
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genetics	31
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animal	18
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cell	16
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cgmp	9
differential	9
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screen	9
subcellular	9
svm	9
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bird	8
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conservation	8
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female	2
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friendfeed	2
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graph	2
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histone	2
history	2
horizontal	2
hupo	2
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illumina	2
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rice	2
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14-3-3	1
145-trisphosphate	1
16s	1
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454	1
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opsin	1
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rfam	1
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rhodothermus	1
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rpon	1
s6	1
saac	1
saccharomycetales	1
salmonella	1
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sativa	1
scent	1
schema	1
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scop	1
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scrubwren	1
sea-slug	1
sec	1
secis	1
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sh2	1
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silica	1
single-cell	1
situ	1
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sm	1
smad7	1
small	1
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xenopus	1
zebrafinch	1
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zimmer	1
zipper	1
znf	1
zoarces	1
zymomonas	1

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