neils's protein [149 articles] Export

Recent papers added to neils's library classified by the tag protein. You can also see everyone's protein.

	Robust-Linear-Model Normalization To Reduce Technical Variability in Functional Protein Microarrays [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Andrea Sboner, Alexander Karpikov, Gengxin Chen, et al.Michael Smith, Mattoon Dawn, Lisa Freeman-Cook, Barry Schweitzer, Mark B. Gerstein posted to statistics protein normalization microarray linear-model by neils on 2009-11-09 22:19:47 as
	Quantification of Membrane Proteins Using Nonspecific Protease Digestions [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Maria Bendz, Mirja C. Möller, Giorgio Arrigoni, et al.Åsa Wåhlander, Roberto Stella, Salvatore Cappadona, Fredrik Levander, Lars Hederstedt, Peter James posted to quantitation proteomics protein protease membrane mass-spec by neils on 2009-11-09 22:13:58 as
	FIGfams: yet another set of protein families [My Copy] Nucl. Acids Res. (17 September 2009), gkp698. by Folker Meyer, Ross Overbeek, Alex Rodriguez posted to protein family database curation classification by neils on 2009-09-21 00:36:03 as along with 3 people and 1 group kshameer timhubbard ppgardne Journal picks
	Algorithms for optimal protein structure alignment [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2751-2756. by Aleksandar Poleksic posted to structure protein alignment algorithms by neils on 2009-09-07 00:07:40 as along with 5 people and 1 group barry operon kshameer nickolay kevinzheng1983 structural_bioinformatics
	FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000485. by Oliver C. Redfern, Benoît H. Dessailly, Timothy J. Dallman, Ian Sillitoe, Christine A. Orengo posted to superfamily structure protein prediction function by neils on 2009-08-30 14:44:25 as along with 3 people and 1 group CorinYeats kiekyon TRHvidsten Orengo Group Journal Picks
	PDB_REDO: automated re-refinement of X-ray structure models in the PDB [My Copy] Journal of Applied Crystallography, Vol. 42, No. 3. (Jun 2009), pp. 376-384. by Robbie P. Joosten, Jean Salzemann, Vincent Bloch, et al.Heinz Stockinger, Ann C. Berglund, Christophe Blanchet, Erik B. Rudloff, Christophe Combet, Ana L. Da Costa, Gilbert Deleage, Matteo Diarena, Roberto Fabbretti, Géraldine Fettahi, Volker Flegel, Andreas Gisel, Vinod Kasam, Timo Kervinen, Eija Korpelainen, Kimmo Mattila, Marco Pagni, Matthieu Reichstadt, Vincent Breton, Ian J. Tickle, Gert Vriend posted to automation pdb protein refinement structure by neils on 2009-07-04 08:46:09 as
	Bacterial Ortholog of Mammalian Translocator Protein (TSPO) with Virulence Regulating Activity [My Copy] PLoS ONE, Vol. 4, No. 6. (30 June 2009), e6096. by Annelise Chapalain, Sylvie Chevalier, Nicole Orange, Laurence Murillo, Vassilios Papadopoulos, Marc G. Feuilloley posted to bacteria eukarya membrane orthology protein pseudomonas virulence by neils on 2009-07-01 00:22:53 as
	PSI-2: structural genomics to cover protein domain family space. [My Copy] Structure (London, England : 1993), Vol. 17, No. 6. (10 June 2009), pp. 869-881. by Benoît H. Dessailly, Rajesh Nair, Lukasz Jaroszewski, et al.J. Eduardo Fajardo, Andrei Kouranov, David Lee, Andras Fiser, Adam Godzik, Burkhard Rost, Christine Orengo posted to domain family protein psi structural-genomics by neils on 2009-06-17 00:10:25 as along with 2 people and 2 groups bdessailly AlexBateman Orengo Group Journal Picks Journal picks
	Structural motifs recurring in different folds recognize the same ligand fragments [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 182. by Gabriele Ausiello, Pier Gherardini, Elena Gatti, Ottaviano Incani, Manuela H. Citterich posted to binding function ligand motifs protein structure by neils on 2009-06-16 00:30:24 as along with 5 people and 2 groups cdsouthan sillitoe VGreiff TRHvidsten reyez Orengo Group Journal Picks Journal picks
	The SALAMI protein structure search server [My Copy] Nucl. Acids Res. (22 May 2009), gkp431. by Thomas Margraf, Gundolf Schenk, Andrew E. Torda posted to alignment protein search similarity structure webserver by neils on 2009-05-23 06:35:10 as along with 1 person and 1 group kshameer structural_bioinformatics
	The role of conserved water molecules in the catalytic domain of protein kinases [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by James D. R. Knight, Donald Hamelberg, Andrew J. Mccammon, Rashmi Kothary posted to catalytic domain function kinase protein structure water by neils on 2009-05-10 23:45:43 as
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to helix interaction membrane prediction protein protein-protein by neils on 2009-04-09 00:04:32 as along with 6 people xdeupi ChanghuiYan george_g friendpine zwang phoenixzxl
	Crystal structure of AFV1-102, a protein from the acidianus filamentous virus 1. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 4. (10 February 2009), pp. 845-849. by Jenny Keller, Nicolas Leulliot, Bruno Collinet, et al.Valerie Campanacci, Christian Cambillau, David Pranghisvilli, Herman van V. Tilbeurgh posted to archaea crystallography interaction protein protein-protein structural-genomics structure virus by neils on 2009-03-26 22:30:52 as
	S-layer, Surface-Accessible, and Concanavalin A Binding Proteins of Methanosarcina acetivorans and Methanosarcina mazei [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Deborah R. Francoleon, Pinmanee Boontheung, Yanan Yang, et al.Unmi Kim, Jimmy A. Ytterberg, Patricia A. Denny, Paul C. Denny, Joseph A. Loo, Robert P. Gunsalus, Ogorzalek posted to archaea methanosarcinaceae protein proteomics s-layer surface by neils on 2009-03-15 11:00:04 as
	High-resolution multi-dimensional NMR spectroscopy of proteins in human cells [My Copy] Nature, Vol. 458, No. 7234. (5 March 2009), pp. 106-109. by Kohsuke Inomata, Ayako Ohno, Hidehito Tochio, et al.Shin Isogai, Takeshi Tenno, Ikuhiko Nakase, Toshihide Takeuchi, Shiroh Futaki, Yutaka Ito, Hidekazu Hiroaki, Masahiro Shirakawa posted to in-vivo nmr protein spectroscopy structure by neils on 2009-03-08 22:19:25 as along with 5 people sebk flbarroso cactus alexknight absterga
	Protein structure determination in living cells by in-cell NMR spectroscopy [My Copy] Nature, Vol. 458, No. 7234. (5 March 2009), pp. 102-105. by Daisuke Sakakibara, Atsuko Sasaki, Teppei Ikeya, et al.Junpei Hamatsu, Tomomi Hanashima, Masaki Mishima, Masatoshi Yoshimasu, Nobuhiro Hayashi, Tsutomu Mikawa, Markus Walchli, Brian O. Smith, Masahiro Shirakawa, Peter Guntert, Yutaka Ito posted to in-vivo nmr protein spectroscopy structure by neils on 2009-03-08 22:18:57 as along with 9 people and 1 group sebk flbarroso eallain cactus barry cychen_cite ts3435 alexknight absterga McCammon
	Evolution of the Antibiotic Resistance Protein, FosA, Is Linked to a Catalytically Promiscuous Progenitor† [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Daniel W. Brown, Matthew R. Schaab, William R. Birmingham, Richard N. Armstrong posted to antibiotic enzymology evolution fosfomycin mesorhizobium protein resistance by neils on 2009-02-15 02:49:15 as
	Prion Protein Modulates Cellular Iron Uptake: A Novel Function with Implications for Prion Disease Pathogenesis [My Copy] PLoS ONE, Vol. 4, No. 2. (12 February 2009), e4468. by Ajay Singh, Maradumane L. Mohan, Alfred O. Isaac, et al.Xiu Luo, Jiri Petrak, Daniel Vyoral, Neena Singh posted to function iron pathogenesis prion protein transport by neils on 2009-02-13 01:45:34 as along with 1 person applebyb
	Structural genomics is the largest contributor of novel structural leverage [My Copy] Journal of Structural and Functional Genomics by Rajesh Nair, Jinfeng Liu, Ta-Tsen Soong, et al.Thomas Acton, John Everett, Andrei Kouranov, Andras Fiser, Adam Godzik, Lukasz Jaroszewski, Christine Orengo, Gaetano Montelione, Burkhard Rost posted to discovery protein review structural-genomics structure by neils on 2009-02-07 08:52:56 as along with 1 person shwu
	Revisiting the missing protein-coding gene catalog of the domestic dog [My Copy] BMC Genomics, Vol. 10, No. 1. (2009) by Thomas Derrien, Julien Theze, Amaury Vaysse, et al.Catherine Andre, Elaine Ostrander, Francis Galibert, Christophe Hitte posted to annotation dog genomics protein sequence by neils on 2009-02-04 23:51:14 as
	Sequence-based feature prediction and annotation of proteins. [My Copy] Genome biology, Vol. 10, No. 2. (2 February 2009) by Agnieszka S. Juncker, Lars J. Jensen, Andrea Pierleoni, et al.Andreas Bernsel, Michael L. Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A. Ouzounis, Rita Casadio, Søren Brunak posted to annotation bioinformatics methods prediction protein review sequence by neils on 2009-02-02 23:24:56 as along with 5 people larsjuhljensen kgutwin nyyu shwu druvus
	Accurate domain identification with structure-anchored hidden Markov models, saHMMs. [My Copy] Proteins, Vol. 76, No. 2. (11 December 2008), pp. 343-352. by Jeanette E. Tångrot, Bo Kågström, Uwe H. Sauer posted to bioinformatics domain hmm prediction protein by neils on 2009-01-28 23:17:36 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolution [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Debanu Das, Piotr Kozbial, Herbert L. Axelrod, et al.Mitchell D. Miller, Daniel Mcmullan, Sri S. Krishna, Polat Abdubek, Claire Acosta, Tamara Astakhova, Prasad Burra, Dennis Carlton, Connie Chen, Hsiu-Ju Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Ylva Elias, Marc-André Elsliger, Dustin Ernst, Carol Farr, Julie Feuerhelm, Anna Grzechnik, Slawomir K. Grzechnik, Joanna Hale, Gye W. Han, Lukasz Jaroszewski, Kevin K. Jin, Hope A. Johnson, Heath E. Klock, Mark W. Knuth, Abhinav Kumar, David Marciano, Andrew T. Morse, Kevin D. Murphy, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Silvya Oommachen, Jessica Paulsen, Christina Puckett, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Sebastian Sudek, Henry Tien, Christine Trame, Christina V. Trout, Henry van den Bedem, Dana Weekes, Aprilfawn White, Qingping Xu, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson posted to bacteria crystallography metagenomics phage protein sm structure by neils on 2009-01-28 23:17:01 as along with 2 people htn4g panghouse
	VASCo: computation and visualization of annotated protein surface contacts [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 32. by Georg Steinkellner, Robert Rader, Gerhard Thallinger, Christoph Kratky, Karl Gruber posted to contact protein software structure surface by neils on 2009-01-26 03:21:15 as along with 5 people richardbickerton superpyrin higueruelo kshameer svozil
	Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases [My Copy] Nucl. Acids Res. (12 January 2009), gkn1008. by Gil-Mi Ryu, Pamela Song, Kyu-Won Kim, Kyung-Soo Oh, Keun-Joon Park, Jong H. Kim posted to analysis genomics kinase phosphorylation protein sequence variation by neils on 2009-01-14 02:00:37 as along with 1 person renatomilani
	Relationship between Expression of the Family of M Proteins and Lipoteichoic Acid to Hydrophobicity and Biofilm Formation in Streptococcus pyogenes [My Copy] PLoS ONE, Vol. 4, No. 1. (Jan 2009) by Harry S. Courtney, Itzhak Ofek, Thomas Penfound, et al.Victor Nizet, Morgan A. Pence, Bernd Kreikemeyer, Andreas Podbielbski, David L. Hasty, James B. Dale posted to bacteria biofilm protein streptococcus surface by neils on 2009-01-10 02:05:37 as
	Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins [My Copy] BMC Genomics, Vol. 10, No. 1. (2009) by Raghu, Boojala posted to analysis bacteria comparative mesophily protein psychrophily sequence by neils on 2009-01-08 23:04:51 as along with 3 people idoerg gpcr kshameer
	Phosphorylation Site Mapping of Endogenous Proteins: A Combined MS and Bioinformatics Approach [My Copy] Journal of Proteome Research, Vol. 0, No. 0. by Jeffrey M. Sundstrom, Christopher J. Sundstrom, Scott A. Sundstrom, et al.Patrice E. Fort, Richard, Thomas W. Gardner, David A. Antonetti posted to bioinformatics maldi mapping ms phosphorylation protein by neils on 2009-01-07 23:30:16 as
	Large-scale prediction of long disordered regions in proteins using random forests [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Pengfei Han, Xiuzhen Zhang, Raymond Norton, Zhi P. Feng posted to bioinformatics disorder prediction protein random-forest by neils on 2009-01-07 23:27:39 as
	Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data. [My Copy] Nature biotechnology (14 December 2008) by W Nicholson N. Price Ii, Yang Chen, Samuel K K. Handelman, et al.Helen Neely, Philip Manor, Richard Karlin, Rajesh Nair, Jinfeng Liu, Michael Baran, John Everett, Saichiu N N. Tong, Farhad Forouhar, Swarup S S. Swaminathan, Thomas Acton, Rong Xiao, Joseph R R. Luft, Angela Lauricella, George T T. Detitta, Burkhard Rost, Gaetano T T. Montelione, John F F. Hunt posted to analysis biophysics crystallography data-mining protein statistics by neils on 2008-12-18 04:03:41 as along with 5 people anwazo betainverse kevinchannon allysonlister egonw
	Thermus thermophilus-derived protein tags that aid in preparation of insoluble viral proteins. [My Copy] Analytical biochemistry (19 November 2008) by Naoyuki Kondo, Akio Ebihara, Heng Ru, et al.Seiki Kuramitsu, Aikichi Iwamoto, Zihe Rao, Zene Matsuda posted to expression in-vitro protein solubility tag thermus virus by neils on 2008-12-18 04:02:13 as along with 1 person taikoo
	SPOCTOPUS: A combined predictor of signal peptides and membrane protein topology. [My Copy] Bioinformatics (Oxford, England) (22 October 2008) by Hâkan Viklund, Andreas Bernsel, Marcin Skwark, Arne Elofsson posted to bioinformatics membrane peptide prediction protein signal software by neils on 2008-12-05 01:09:48 as along with 1 person grahamc
	Mistranslation of Membrane Proteins and Two-Component System Activation Trigger Antibiotic-Mediated Cell Death [My Copy] Cell, Vol. 135, No. 4. (14 November 2008), pp. 679-690. by M. Kohanski, D. Dwyer, J. Wierzbowski, G. Cottarel, J. Collins posted to antibiotic membrane protein ribosome systems-biology two-component by neils on 2008-11-26 23:33:40 as along with 2 people gwenknight dswan
	Prediction of specificity-determining residues for small-molecule kinase inhibitors [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Daniel Caffrey, Elizabeth Lunney, Deborah Moshinsky posted to bioinformatics inhibitor kinase prediction protein residue specificity by neils on 2008-11-26 01:00:24 as along with 2 people reyez renatomilani
	Expression Patterns of Protein Kinases Correlate with Gene Architecture and Evolutionary Rates [My Copy] PLoS ONE, Vol. 3, No. 10. (31 October 2008), e3599. by Aleksey Y. Ogurtsov, Leonardo Mariño-Ramírez, Gibbes R. Johnson, David Landsman, Svetlana A. Shabalina, Nikolay A. Spiridonov posted to evolution expression genomics kinase protein by neils on 2008-11-02 09:17:31 as
	Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast [My Copy] Nature, Vol. 455, No. 7217. (28 September 2008), pp. 1251-1254. by Lyris M. F. de Godoy, Jesper V. Olsen, Jurgen Cox, et al.Michael L. Nielsen, Nina C. Hubner, Florian Frohlich, Tobias C. Walther, Matthias Mann posted to mass-spec protein proteomics quantitation yeast by neils on 2008-10-29 23:55:19 as along with 11 people and 2 groups alyssaporter mhiromi nzm xingxu raiyar oelemento stajich caseybrown dullhunk brianb thomaskelder Mycology microbiology_nijmegen
	SDR: a database of predicted specificity-determining residues in proteins [My Copy] Nucl. Acids Res. (16 October 2008), gkn716. by Jason E. Donald, Eugene I. Shakhnovich posted to bioinformatics database function prediction protein residue specificity structure by neils on 2008-10-17 09:05:36 as
	Formation of an Unfolding Intermediate State of Soluble Chloride Intracellular Channel Protein CLIC1 at Acidic pH [My Copy] Biochemistry (14 October 2008) by Sylvia Fanucchi, Roslin J. Adamson, Heini W. Dirr posted to channel clic folding intermediate membrane protein by neils on 2008-10-15 03:03:45 as along with 1 person paulschlesinger
	HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot [My Copy] Nucl. Acids Res. (11 October 2008), gkn661. by Tania Lima, Andrea H. Auchincloss, Elisabeth Coudert, et al.Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard de Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch posted to curation database family microbial protein proteome sequence by neils on 2008-10-12 23:45:04 as along with 1 person brianb
	"Forbidden" disulfides: their role as redox switches. [My Copy] Current protein & peptide science, Vol. 8, No. 5. (October 2007), pp. 484-495. by M. A. Wouters, R. A. George, N. L. Haworth posted to disulphide protein redox review structure by neils on 2008-10-07 00:49:19 as
	Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role. [My Copy] Extremophiles : life under extreme conditions, Vol. 13, No. 1. (30 January 2009), pp. 11-20. by G. Saelensminde, Ø. Halskau, I. Jonassen posted to contact mesophily protein psychrophily structure temperature thermophily by neils on 2008-10-02 00:06:48 as along with 2 people nyyu merj
	MetaMQAP: a meta-server for the quality assessment of protein models [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Marcin Pawlowski, Michal Gajda, Ryszard Matlak, Janusz Bujnicki posted to bioinformatics models protein quality structure webserver by neils on 2008-09-30 00:11:57 as along with 1 person pjcite
	Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Theresa A. Ramelot, Srivatsan Raman, Alexandre P. Kuzin, et al.Rong Xiao, Li-Chung Ma, Thomas B. Acton, John F. Hunt, Gaetano T. Montelione, David Baker, Michael A. Kennedy posted to nmr protein refinement rosetta structure by neils on 2008-09-26 01:25:03 as along with 2 people pansapiens sunhwan
	Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families. [My Copy] Protein Sci, Vol. 15, No. 9. (September 2006), pp. 2120-2128. by A. del Sol, H. Fujihashi, D. Amoros, R. Nussinov posted to analysis bioinformatics centrality enzyme function network protein residue structure by neils on 2008-09-17 07:37:18 as along with 4 people bicko drastic choonpeng massivemayhem
	Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (15 June 2007), e117. by Zengjian Hu, Donnell Bowen, William M. Southerland, et al. Del, Yongping Pan, Ruth Nussinov, Buyong Ma posted to analysis dhfr interaction network protein structure by neils on 2008-09-17 07:33:17 as
	Improved prediction of critical residues for protein function based on network and phylogenetic analyses. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by B. Thibert, D. E. Bredesen, G. del Rio posted to bioinformatics function network phylogeny prediction protein structure by neils on 2008-09-17 07:30:55 as along with 3 people and 1 group pansapiens Einat sriram_s structural_bioinformatics
	How accurate and statistically robust are catalytic site predictions based on closeness centrality? [My Copy] BMC Bioinformatics, Vol. 8 (11 May 2007), 153. by Eric Chea, Dennis R. Livesay posted to bioinformatics catalytic centrality network prediction protein structure-activity by neils on 2008-09-17 07:28:00 as along with 3 people and 1 group pablocarb Einat massivemayhem structural_bioinformatics
	The Protein Data Bank: a historical perspective [My Copy] Acta Crystallographica Section A, Vol. 64, No. 1. (Jan 2008), pp. 88-95. by Helen M. Berman posted to history pdb protein review stucture by neils on 2008-09-10 03:25:12 as
	Widespread changes in protein synthesis induced by microRNAs [My Copy] Nature, Vol. 455, No. 7209. (30 July 2008), pp. 58-63. by Matthias Selbach, Bjorn Schwanhausser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky posted to expression ncrna protein proteomics by neils on 2008-09-04 00:19:05 as along with 24 people and 2 groups inesdesantiago lwaldron danaiancu fishtank dswan TRHvidsten pengchy valeriehilgers druvus guhjy martin-novak cajunsushi heliopais vertikalist jfr caizhiqiang psique megraw j_rodriguez erel10 maralena reyez mtagaya gdb microRNA BTS-PT-AS-CS
	Alignment of protein structures in the presence of domain motions [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Roberto Mosca, Barbara Brannetti, Thomas Schneider posted to alignment bioinformatics domain motion protein structure by neils on 2008-08-28 00:46:10 as along with 4 people viktor21614 dimka reyez vinithepooh

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bioinformatics	196
protein	149
genomics	137
structure	130
kinase	127
prediction	111
phosphorylation	101
interaction	96
software	96
protein-protein	85
database	83
sequence	83
analysis	82
proteomics	80
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review	69
evolution	67
statistics	63
archaea	58
human	53
article-predikin	51
microarray	46
network	45
genome	44
metagenomics	38
data	37
sequencing	36
webserver	36
specificity	35
peptide	34
domain	33
substrate	33
mass-spec	32
genetics	31
phylogeny	30
binding	29
expression	29
virus	29
article-pka-pkg	25
function	25
regulation	25
annotation	24
enzyme	24
signal	24
amino-acid	23
pathogen	23
r-project	23
molecular	22
psychrophily	21
signaling	21
complex	20
crystallography	20
disease	20
alignment	19
gene	19
localisation	19
next-generation	19
transcriptomics	19
yeast	19
animal	18
ecology	18
article-nar	17
comparative	17
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transduction	17
cell	16
membrane	16
nuclear	16
nls	15
prokaryotic	15
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transcription	15
classification	14
integration	14
phosphoprotein	14
plant	14
protein-serine-threonine	14
sites	14
homology	13
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internet	13
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camp	12
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computational	12
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phosphatase	10
rna	10
x-ray	10
affymetrix	9
algorithm	9
browser	9
cgmp	9
differential	9
for-thuber	9
metabolomics	9
motifs	9
proteome	9
recruitment	9
screen	9
subcellular	9
svm	9
visualisation	9
akap	8
bird	8
conformation	8
conservation	8
curation	8
data-mining	8
design	8
drug	8
eukarya	8
microbiome	8
mutation	8
nmr	8
paracoccus	8
plasmodium	8
research	8
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standards	8
structural-genomics	8
thermal	8
assembly	7
biology	7
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mitochondria	6
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phosphopeptides	6
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rat	6
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serine	6
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surface	6
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iron	5
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male	5
marine	5
mesophily	5
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methanococcoides	5
mitogen-activated	5
module	5
motif	5
openaccess	5
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palaeontology	5
parasitism	5
pathway	5
pdb	5
protein-tyrosine	5
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quality	5
quantitation	5
random-forest	5
reductase	5
residue	5
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secondary	5
service	5
sharing	5
splicing	5
technology	5
text-mining	5
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two-component	5
amp-dependent	4
antibiotic	4
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composition	4
conference	4
cos	4
cyanobacteria	4
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methanosarcinaceae	4
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nitrite	4
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p110	4
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perl	4
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report	4
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spectroscopy	4
src	4
streptococcus	4
techniques	4
tools	4
topology	4
triphosphate	4
tyrosine	4
virulence	4
wiki	4
2d-dige	3
affinity	3
agriculture	3
apis	3
autism	3
bacillus	3
base	3
beta-adrenergic	3
biochemical	3
biofilm	3
biogenesis	3
biophysics	3
brain	3
career	3
cassette	3
chemical	3
clinical	3
cluster	3
collaboration	3
computational-biology	3
contact	3
correspondence	3
cultured	3
degradation	3
dimerization	3
dinosaur	3
diversity	3
dna-binding	3
drosophila	3
dynamics	3
ecoli	3
electron-microscopy	3
errors	3
fish	3
graphics	3
heat-shock	3
helicobacter	3
helix	3
hgt	3
high-throughput	3
humour	3
image	3
impact-factor	3
import	3
inbred	3
introduction	3
isoenzymes	3
isoforms	3
kegg	3
lims	3
linear	3
macrophage	3
malaria	3
methanococcus	3
migration	3
mouse	3
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nitric	3
normalization	3
npc	3
of	3
ontology	3
orfan	3
orthology	3
phylogenetics	3
physiology	3
pipeline	3
population	3
post-translational	3
probability	3
processing	3
programming	3
protein-dna	3
psychrobacter	3
public	3
publishing	3
pyrosequencing	3
relationship	3
response	3
results	3
retrieval	3
roc	3
saccharomyces	3
sensitivity	3
serine-protease	3
signature	3
streptomyces	3
sulfolobus	3
synthesis	3
systems-biology	3
tag	3
target	3
temperature	3
thermus	3
tissue	3
transfer	3
translation	3
transport	3
ubiquitin	3
variation	3
water	3
xml	3
adaptor	2
aethiops	2
agents	2
ajax	2
algae	2
anchor	2
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api	2
arginine	2
artificial	2
arxiv	2
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avian	2
bayesian	2
bee	2
behaviour	2
biomart	2
biotechnology	2
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c57bl	2
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carrier	2
cdk	2
centrality	2
cercopithecus	2
cerevisiae	2
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checkpoint	2
chip	2
citations	2
climate	2
cloning	2
cloud-computing	2
coevolution	2
cold	2
coli	2
colorectal	2
complementary	2
complex-i	2
compounds	2
computer-assisted	2
consensus	2
context	2
control	2
co-occurrence	2
copy-number	2
correlation	2
covariance	2
cow	2
cryo-em	2
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cycle	2
dengue	2
detection	2
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dog	2
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ebi	2
electron	2
electrophoresis	2
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embryo	2
endoplasmic	2
enterococcus	2
escherichia	2
evaluation	2
extracellular	2
feature	2
female	2
fragments	2
framework	2
friendfeed	2
global	2
glycosylation	2
gmp-dependent	2
g-protein-coupled	2
graph	2
haloferax	2
histone	2
history	2
horizontal	2
hupo	2
identification	2
ignicoccus	2
illumina	2
immunology	2
industry	2
infrastructure	2
insect	2
intelligence	2
intracellular	2
introns	2
in-vivo	2
ismb	2
javascript	2
journals	2
lead	2
leucine	2
lgt	2
lichen	2
lie	2
ligases	2
lrr	2
lymphocyte	2
maldi	2
mammal	2
matrix	2
md	2
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medicine	2
metadata	2
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mobile	2
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modification	2
ms-ms	2
multiprotein	2
muscle	2
myxobacteria	2
neural	2
neural-network	2
nitrous	2
nnr	2
obesity	2
operon	2
optimisation	2
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organism	2
osmotic	2
p21-activated	2
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pattern	2
pdz	2
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personalised	2
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pichia	2
platypus	2
polo	2
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pressure	2
probe	2
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protein-ligand	2
proteins	2
psi	2
psychology	2
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python	2
reaction	2
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region	2
repair	2
repressor	2
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rhodopsin	2
rice	2
ruby	2
salivary	2
salmon	2
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screening	2
selenocysteine	2
sensing	2
serpin	2
sh3	2
short-read	2
similarity	2
site-directed	2
snake	2
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squid	2
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twitter	2
ubiquitin-protein	2
vertebrate	2
virtual	2
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xanthomonas	2
14-3-3	1
145-trisphosphate	1
16s	1
2008	1
23andme	1
2d-page	1
454	1
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abl	1
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as	1
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circular	1
citrate	1
c-jun	1
class-i	1
class-ii	1
cleavage	1
clic	1
clinical_trial	1
clock	1
cm552	1
cms	1
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cnv	1
codon	1
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coexpression	1
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colwellia	1
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complexity	1
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copy	1
core	1
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culture	1
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cyclin	1
cyclin-dependent	1
cysteine	1
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cytoskeletal	1
cytosol	1
dal5	1
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dhfr	1
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dipz	1
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encode	1
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engineering	1
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environmental	1
envz	1
enyzme	1
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foldx	1
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freezing	1
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gecko	1
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glucose	1
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google	1
gos	1
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gui	1
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halorhabdus	1
halothermothrix	1
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herminiimonas	1
histidine-kinase	1
hiv	1
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hsp90	1
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icat	1
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ignobel	1
imac	1
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img	1
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india	1
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insulin	1
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integron	1
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intestine	1
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irs	1
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kernel	1
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koryarchaeum	1
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laccaria	1
lactase	1
lactobacillus	1
lake-vostok	1
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laribacter	1
lasso	1
leishmania	1
leptospira	1
letter	1
ligand-gated	1
limosa	1
lincrna	1
linear-model	1
linkage	1
liquid	1
liver	1
lod	1
loop	1
lsid	1
luciferase	1
m2	1
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magnetic	1
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mapk	1
mapreduce	1
mark	1
markup	1
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masking	1
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maturation	1
medline	1
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metal	1
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methanocaldococcus	1
methanogenesis	1
methanogenium	1
methanogens	1
methylation	1
microbio	1
microblogging	1
microdomains	1
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mint	1
mites	1
mitogens	1
moby	1
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monophosphate	1
motion	1
mpsk1	1
ms	1
mutant	1
mycorrhizae	1
myocytes	1
myod	1
names	1
natronomonas	1
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nb-arc	1
ncbi	1
neandertal	1
neanderthal	1
negative	1
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neisseria	1
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netphosk	1
neurochemistry	1
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newzealand	1
nih	1
nir	1
nirs	1
nirx	1
nitrification	1
nitrogen_fixation	1
nitrosomonas	1
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nosx	1
notebook	1
nsrr	1
nucleation	1
nucleolus	1
nucleoporin	1
nucleotide	1
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number	1
nup	1
ocean	1
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ogt	1
oligomeric	1
oligotrophy	1
oncogene	1
online	1
opsin	1
oreilly	1
orf	1
orfs	1
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origin	1
oryza	1
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outreach	1
owl	1
p38	1
p56lck	1
p85	1
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par1	1
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pb2	1
pca	1
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pellino	1
peptidoglycan	1
periodicity	1
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perspective	1
pfam	1
phage	1
phenylobacterium	1
phone	1
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pkc	1
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pks	1
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porin	1
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prostate	1
protein-tyrosine-phosphatase	1
protocol	1
proto-oncogene	1
prozac	1
pseudoalteromonas	1
psi-blast	1
pssm	1
psychromonas	1
ptm	1
pubmed	1
pyrobaculum	1
pyrococcus	1
qc	1
quail	1
quaternary	1
queensland	1
query	1
quick-guide	1
radiation	1
radioisotope	1
ran	1
random-fields	1
rank	1
raptor	1
rast	1
ray	1
rdf	1
reads	1
real-time	1
recognition	1
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redox	1
refseq	1
regulator	1
reliability	1
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repetitive	1
replication	1
resolution	1
resonance	1
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rest	1
retinoblastoma	1
retroelement	1
reverse-transcriptase	1
rfam	1
rhinovirus	1
rhizobia	1
rhodothermus	1
ribonuclease	1
ribosomal	1
rigid-body	1
rnai	1
rnasep	1
roc_curve	1
rosetta	1
rpon	1
s6	1
saac	1
saccharomycetales	1
salmonella	1
sars	1
sativa	1
scent	1
schema	1
schistosoma	1
scop	1
score	1
scoring	1
scrubwren	1
sea-slug	1
sec	1
secis	1
serrated	1
serum	1
sex-determination	1
sh2	1
shewanella	1
significance	1
silac	1
silica	1
single-cell	1
situ	1
s-layer	1
sm	1
smad7	1
small	1
smoking	1
smooth	1
snorkel	1
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social-networking	1
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solexa	1
song	1
sorghum	1
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species	1
specific	1
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srp	1
staphylococcus	1
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stitch	1
storage	1
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stress	1
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student	1
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subunit	1
sugar_cane	1
sulfur	1
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svn	1
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tap	1
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taxonomy	1
tests	1
tet	1
theorem	1
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thermococcus	1
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thylacine	1
tiling	1
t-lymphocyte	1
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tomato	1
toxicity	1
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transcript	1
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transferase	1
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trigger	1
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type	1
type-iii	1
type-iv	1
type-vi	1
tyrannosaurus	1
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ultraviolet	1
uncertainty	1
unicellular	1
univariate	1
uptake	1
uq	1
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usage	1
utrs	1
uv	1
vaccination	1
validation	1
variome	1
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vasodilator	1
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viking	1
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weights	1
wheat	1
workplace	1
wortmannin	1
wwpdb	1
xenopus	1
zebrafinch	1
zebrafish	1
zimmer	1
zipper	1
znf	1
zoarces	1
zymomonas	1

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