neils's sequence [83 articles] Export

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	LIBRUS: Combined Machine Learning and Homology Information for Sequence-based Ligand-Binding Residue Prediction [My Copy] Bioinformatics (28 September 2009), btp561. by Chris Kauffman, George Karypis posted to sequence prediction machine-learning ligand homology binding by neils on 2009-09-30 00:52:38 as
	Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 450. by Marcelo Bertalan, Rodolpho Albano, Vania de Padua, et al.Luc Rouws, Cristian Rojas, Adriana Hemerly, Katia Teixeira, Stefan Schwab, Jean Araujo, Andre Oliveira, Leonardo Franca, Viviane Magalhaes, Sylvia Alqueres, Alexander Cardoso, Wellington Almeida, Marcio Loureiro, Eduardo Nogueira, Daniela Cidade, Denise Oliveira, Tatiana Simao, Jacyara Macedo, Ana Valadao, Marcela Dreschsel, Flavia Freitas, Marcia Vidal, Helma Guedes, Elisete Rodrigues, Carlos Meneses, Paulo Brioso, Luciana Pozzer, Daniel Figueiredo, Helena Montano, Jadier Junior, Goncalo de Souza Filho, Victor Martin Quintana Flores, Beatriz Ferreira, Alan Branco, Paula Gonzalez, Heloisa Guillobel, Melissa Lemos, Luiz Seibel, Jose Macedo, Marcio A. Ferreira, Gilberto S. Martins, Ana Coelho, Eidy Santos, Gilda Amaral, Anna Neves, Ana Pacheco, Daniela Carvalho, Leticia Lery, Paulo Bisch, Shaila Rossle, Turan Urmenyi, Alessandra R. Pereira, Rosane Silva, Edson Rondinelli, Wanda von Kruger, Orlando Martins, Jose Baldani, Paulo Ferreira posted to sugar_cane sequence nitrogen_fixation gluconacetobacter genome bacteria by neils on 2009-09-24 00:18:36 as along with 2 people scmelton druvus
	Genome sequence of the recombinant protein production host Pichia pastoris [My Copy] Nat Biotech, Vol. 27, No. 6. (June 2009), pp. 561-566. by Kristof De Schutter, Yao-Cheng Lin, Petra Tiels, et al.Annelies Van Hecke, Sascha Glinka, Jacqueline Weber-Lehmann, Pierre Rouze, Yves Van de Peer, Nico Callewaert posted to genomics methylotrophy pichia sequence yeast by neils on 2009-06-10 00:01:19 as along with 1 person kiekyon
	A methanogen hosted the origin of the genetic code. [My Copy] Journal of theoretical biology (3 June 2009) by Massimo Di Giulio posted to analysis archaea bioinformatics evolution methanogen sequence by neils on 2009-06-10 00:00:12 as
	Structure is three to ten times more conserved than sequence - A study of structural response in protein cores [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 3. (20 April 2009), pp. 499-508. by Kristoffer Illergård, David H. Ardell, Arne Elofsson posted to analysis bioinformatics conservation function sequence structure by neils on 2009-06-09 23:58:57 as along with 4 people and 1 group TRHvidsten AliC brianb reyez Orengo Group Journal Picks
	Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources [My Copy] PLoS ONE, Vol. 4, No. 5. (18 May 2009), e5584. by Stéphane Vuilleumier, Ludmila Chistoserdova, Ming-Chun Lee, et al.Françoise Bringel, Aurélie Lajus, Yang Zhou, Benjamin Gourion, Valérie Barbe, Jean Chang, Stéphane Cruveiller, Carole Dossat, Will Gillett, Christelle Gruffaz, Eric Haugen, Edith Hourcade, Ruth Levy, Sophie Mangenot, Emilie Muller, Thierry Nadalig, Marco Pagni, Christian Penny, Rémi Peyraud, David G. Robinson, David Roche, Zoé Rouy, Channakhone Saenampechek, Grégory Salvignol, David Vallenet, Zaining Wu, Christopher J. Marx, Julia A. Vorholt, Maynard V. Olson, Rajinder Kaul, Jean Weissenbach, Claudine Médigue, Mary E. Lidstrom posted to bacteria c1 genomics metabolism methylotrophy sequence by neils on 2009-05-18 00:41:50 as
	The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution [My Copy] Science, Vol. 324, No. 5926. (24 April 2009), pp. 522-528. by The Bovine Genome Sequencing and Analysis Consortium, Christine G. Elsik, Ross L. Tellam, et al.Kim C. Worley, Richard A. Gibbs, Donna M. Muzny, George M. Weinstock, David L. Adelson, Evan E. Eichler, Laura Elnitski, Roderic Guigo, Debora L. Hamernik, Steve M. Kappes, Harris A. Lewin, David J. Lynn, Frank W. Nicholas, Alexandre Reymond, Monique Rijnkels, Loren C. Skow, Evgeny M. Zdobnov, Lawrence Schook, James Womack, Tyler Alioto, Stylianos E. Antonarakis, Alex Astashyn, Charles E. Chapple, Hsiu-Chuan Chen, Jacqueline Chrast, Francisco Camara, Olga Ermolaeva, Charlotte N. Henrichsen, Wratko Hlavina, Yuri Kapustin, Boris Kiryutin, Paul Kitts, Felix Kokocinski, Melissa Landrum, Donna Maglott, Kim Pruitt, Victor Sapojnikov, Stephen M. Searle, Victor Solovyev, Alexandre Souvorov, Catherine Ucla, Carine Wyss, Juan M. Anzola, Daniel Gerlach, Eran Elhaik, Dan Graur, Justin T. Reese, Robert C. Edgar, John C. Mcewan, Gemma M. Payne, Joy M. Raison, Thomas Junier, Evgenia V. Kriventseva, Eduardo Eyras, Mireya Plass, Ravikiran Donthu, Denis M. Larkin, James Reecy, Mary Q. Yang, Lin Chen, Ze Cheng, Carol G. Chitko-Mckown, George E. Liu, Lakshmi K. Matukumalli, Jiuzhou Song, Bin Zhu, Daniel G. Bradley, Fiona S. L. Brinkman, Lilian P. L. Lau, Matthew D. Whiteside, Angela Walker, Thomas T. Wheeler, Theresa Casey, J. Bruce German, Danielle G. Lemay, Nauman J. Maqbool, Adrian J. Molenaar, Seongwon Seo, Paul Stothard, Cynthia L. Baldwin, Rebecca Baxter, Candice L. Brinkmeyer-Langford, Wendy C. Brown, Christopher P. Childers, Timothy Connelley, Shirley A. Ellis, Krista Fritz, Elizabeth J. Glass, Carolyn T. A. Herzig, Antti Iivanainen, Kevin K. Lahmers, Anna K. Bennett, C. Michael Dickens, James G. R. Gilbert, Darren E. Hagen, Hanni Salih, Jan Aerts, Alexandre R. Caetano, Brian Dalrymple, Jose F. Garcia, Clare A. Gill, Stefan G. Hiendleder, Erdogan Memili, Diane Spurlock, John L. Williams, Lee Alexander, Michael J. Brownstein, Leluo Guan, Robert A. Holt, Steven J. M. Jones, Marco A. Marra, Richard Moore, Stephen S. Moore, Andy Roberts, Masaaki Taniguchi, Richard C. Waterman, Joseph Chacko, Mimi M. Chandrabose, Andy Cree, Marvin D. Dao, Huyen H. Dinh, Ramatu A. Gabisi, Sandra Hines, Jennifer Hume, Shalini N. Jhangiani, Vandita Joshi, Christie L. Kovar, Lora R. Lewis, Yih-Shin Liu, John Lopez, Margaret B. Morgan, Ngoc B. Nguyen, Geoffrey O. Okwuonu, San J. Ruiz, Jireh Santibanez, Rita A. Wright, Christian Buhay, Yan Ding, Shannon Dugan-Rocha, Judith Herdandez, Michael Holder, Aniko Sabo, Amy Egan, Jason Goodell, Katarzyna Wilczek-Boney, Gerald R. Fowler, Matthew E. Hitchens, Ryan J. Lozado, Charles Moen, David Steffen, James T. Warren, Jingkun Zhang, Readman Chiu, Jacqueline E. Schein, K. James Durbin, Paul Havlak, Huaiyang Jiang, Yue Liu, Xiang Qin, Yanru Ren, Yufeng Shen, Henry Song, Stephanie N. Bell, Clay Davis, Angela J. Johnson, Sandra Lee, Lynne V. Nazareth, Bella M. Patel, Ling-Ling Pu, Selina Vattathil, Rex L. Williams, Stacey Curry, Cerissa Hamilton, Erica Sodergren, David A. Wheeler, Wes Barris, Gary L. Bennett, Andre Eggen, Ronnie D. Green, Gregory P. Harhay, Matthew Hobbs, Oliver Jann, John W. Keele, Matthew P. Kent, Sigbjorn Lien, Stephanie D. Mckay, Sean Mcwilliam, Abhirami Ratnakumar, Robert D. Schnabel, Timothy Smith, Warren M. Snelling, Tad S. Sonstegard, Roger T. Stone, Yoshikazu Sugimoto, Akiko Takasuga, Jeremy F. Taylor, Curtis P. Van Tassell, Michael D. Macneil, Antonio R. R. Abatepaulo, Colette A. Abbey, Virpi Ahola, Iassudara G. Almeida, Ariel F. Amadio, Elen Anatriello, Suria M. Bahadue, Fernando H. Biase, Clayton R. Boldt, Jeffery A. Carroll, Wanessa A. Carvalho, Eliane P. Cervelatti, Elsa Chacko, Jennifer E. Chapin, Ye Cheng, Jungwoo Choi, Adam J. Colley, Tatiana A. de Campos, Marcos De Donato, Isabel K. Santos, Carlo J. F. de Oliveira, Heather Deobald, Eve Devinoy, Kaitlin E. Donohue, Peter Dovc, Annett Eberlein, Carolyn J. Fitzsimmons, Alessandra M. Franzin, Gustavo R. Garcia, Sem Genini, Cody J. Gladney, Jason R. Grant, Marion L. Greaser, Jonathan A. Green, Darryl L. Hadsell, Hatam A. Hakimov, Rob Halgren, Jennifer L. Harrow, Elizabeth A. Hart, Nicola Hastings, Marta Hernandez, Zhi-Liang Hu, Aaron Ingham, Terhi Iso-Touru, Catherine Jamis, Kirsty Jensen, Dimos Kapetis, Tovah Kerr, Sari S. Khalil, Hasan Khatib, Davood Kolbehdari, Charu G. Kumar, Dinesh Kumar, Richard Leach, Justin C. M. Lee, Changxi Li, Krystin M. Logan, Roberto Malinverni, Elisa Marques, William F. Martin, Natalia F. Martins, Sandra R. Maruyama, Raffaele Mazza, Kim L. Mclean, Juan F. Medrano, Barbara T. Moreno, Daniela D. More, Carl T. Muntean, Hari P. Nandakumar, Marcelo F. G. Nogueira, Ingrid Olsaker, Sameer D. Pant, Francesca Panzitta, Rosemeire C. P. Pastor, Mario A. Poli, Nathan Poslusny, Satyanarayana Rachagani, Shoba Ranganathan, Andrej Razpet, Penny K. Riggs, Gonzalo Rincon, Nelida Rodriguez-Osorio, Sandra L. Rodriguez-Zas, Natasha E. Romero, Anne Rosenwald, Lillian Sando, Sheila M. Schmutz, Libing Shen, Laura Sherman, Bruce R. Southey, Ylva S. Lutzow, Jonathan V. Sweedler, Imke Tammen, Bhanu P. Telugu, Jennifer M. Urbanski, Yuri T. Utsunomiya, Chris P. Verschoor, Ashley J. Waardenberg, Zhiquan Wang, Robert Ward, Rosemarie Weikard, Thomas H. Welsh, Stephen N. White, Laurens G. Wilming, Kris R. Wunderlich, Jianqi Yang, Feng-Qi Zhao posted to agriculture bovine cow genomics sequence by neils on 2009-04-24 01:10:26 as along with 5 people pengchy samgj jbhiatt djkt natstreet
	The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota [My Copy] BMC Genomics, Vol. 10 (02 April 2009), 145. by Iain, Nikos Kyrpides posted to analysis archaea crenarchaea genome metabolism sequence staphylothermus by neils on 2009-04-03 08:30:06 as
	The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats. [My Copy] PLoS genetics, Vol. 5, No. 3. (March 2009) by P. C. Woo, S. K. Lau, H. Tse, et al.J. L. Teng, S. O. Curreem, A. K. Tsang, R. Y. Fan, G. K. Wong, Y. Huang, N. J. Loman, L. A. Snyder, J. J. Cai, J. D. Huang, W. Mak, M. J. Pallen, S. Lok, K. Y. Yuen posted to adaptation bacteria genome laribacter pathogen sequence thermal by neils on 2009-03-15 21:42:13 as
	Revisiting the missing protein-coding gene catalog of the domestic dog [My Copy] BMC Genomics, Vol. 10, No. 1. (2009) by Thomas Derrien, Julien Theze, Amaury Vaysse, et al.Catherine Andre, Elaine Ostrander, Francis Galibert, Christophe Hitte posted to annotation dog genomics protein sequence by neils on 2009-02-04 23:51:14 as
	Sequence-based feature prediction and annotation of proteins. [My Copy] Genome biology, Vol. 10, No. 2. (2 February 2009) by Agnieszka S. Juncker, Lars J. Jensen, Andrea Pierleoni, et al.Andreas Bernsel, Michael L. Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A. Ouzounis, Rita Casadio, Søren Brunak posted to annotation bioinformatics methods prediction protein review sequence by neils on 2009-02-02 23:24:56 as along with 5 people larsjuhljensen kgutwin nyyu shwu druvus
	Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000278. by Mile Šikić, Sanja Tomić, Kristian Vlahoviček posted to interaction prediction protein-protein random-forest sequence structure by neils on 2009-01-30 01:49:03 as along with 7 people and 2 groups roys svozil marti barry grahamc higueruelo kshameer structural_bioinformatics McCammon
	The Sorghum bicolor genome and the diversification of grasses [My Copy] Nature, Vol. 457, No. 7229. (29 January 2009), pp. 551-556. by Andrew H. Paterson, John E. Bowers, Remy Bruggmann, et al.Inna Dubchak, Jane Grimwood, Heidrun Gundlach, Georg Haberer, Uffe Hellsten, Therese Mitros, Alexander Poliakov, Jeremy Schmutz, Manuel Spannagl, Haibao Tang, Xiyin Wang, Thomas Wicker, Arvind K. Bharti, Jarrod Chapman, Alex F. Feltus, Udo Gowik, Igor V. Grigoriev, Eric Lyons, Christopher A. Maher, Mihaela Martis, Apurva Narechania, Robert P. Otillar, Bryan W. Penning, Asaf A. Salamov, Yu Wang, Lifang Zhang, Nicholas C. Carpita, Michael Freeling, Alan R. Gingle, Thomas C. Hash, Beat Keller, Patricia Klein, Stephen Kresovich, Maureen C. Mccann, Ray Ming, Daniel G. Peterson, Mehboob-Ur-Rahman, Doreen Ware, Peter Westhoff, Klaus F. Mayer, Joachim Messing, Daniel S. Rokhsar posted to adaptation evolution genome plant sequence sorghum by neils on 2009-01-28 23:16:07 as along with 3 people natstreet Neeperando soberhaensli
	The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions [My Copy] Science, Vol. 318, No. 5848. (12 October 2007), pp. 245-250. by Sabeeha S. Merchant, Simon E. Prochnik, Olivier Vallon, et al.Elizabeth H. Harris, Steven J. Karpowicz, George B. Witman, Astrid Terry, Asaf Salamov, Lillian K. Fritz-Laylin, Laurence Marechal-Drouard, Wallace F. Marshall, Liang-Hu Qu, David R. Nelson, Anton A. Sanderfoot, Martin H. Spalding, Vladimir V. Kapitonov, Qinghu Ren, Patrick Ferris, Erika Lindquist, Harris Shapiro, Susan M. Lucas, Jane Grimwood, Jeremy Schmutz, Pierre Cardol, Heriberto Cerutti, Guillaume Chanfreau, Chun-Long Chen, Valerie Cognat, Martin T. Croft, Rachel Dent, Susan Dutcher, Emilio Fernandez, Hideya Fukuzawa, David Gonzalez-Ballester, Diego Gonzalez-Halphen, Armin Hallmann, Marc Hanikenne, Michael Hippler, William Inwood, Kamel Jabbari, Ming Kalanon, Richard Kuras, Paul A. Lefebvre, Stephane D. Lemaire, Alexey V. Lobanov, Martin Lohr, Andrea Manuell, Iris Meier, Laurens Mets, Maria Mittag, Telsa Mittelmeier, James V. Moroney, Jeffrey Moseley, Carolyn Napoli, Aurora M. Nedelcu, Krishna Niyogi, Sergey V. Novoselov, Ian T. Paulsen, Greg Pazour, Saul Purton, Jean-Philippe Ral, Diego M. Riano-Pachon, Wayne Riekhof, Linda Rymarquis, Michael Schroda, David Stern, James Umen, Robert Willows, Nedra Wilson, Sara L. Zimmer, Jens Allmer, Janneke Balk, Katerina Bisova, Chong-Jian Chen, Marek Elias, Karla Gendler, Charles Hauser, Mary R. Lamb, Heidi Ledford, Joanne C. Long, Jun Minagawa, M. Dudley Page, Junmin Pan, Wirulda Pootakham, Sanja Roje, Annkatrin Rose, Eric Stahlberg, Aimee M. Terauchi, Pinfen Yang, Steven Ball, Chris Bowler, Carol L. Dieckmann, Vadim N. Gladyshev, Pamela Green, Richard Jorgensen, Stephen Mayfield, Bernd Mueller-Roeber, Sathish Rajamani, Richard T. Sayre, Peter Brokstein, Inna Dubchak, David Goodstein, Leila Hornick, Y. Wayne Huang, Jinal Jhaveri, Yigong Luo, Diego Martinez, Wing C. Ngau, Bobby Otillar, Alexander Poliakov, Aaron Porter, Lukasz Szajkowski, Gregory Werner, Kemin Zhou, Igor V. Grigoriev, Daniel S. Rokhsar, Arthur R. Grossman posted to algae analysis chlamydomonas evolution genome plant sequence by neils on 2009-01-21 07:26:46 as along with 8 people rshe thegoose2 operon dragonrez zwang dandaman tharris JeremyZucker
	Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum [My Copy] PLoS ONE, Vol. 4, No. 1. (16 January 2009), e4207. by Dongying Wu, Jason Raymond, Martin Wu, et al.Sourav Chatterji, Qinghu Ren, Joel E. Graham, Donald A. Bryant, Frank Robb, Albert Colman, Luke J. Tallon, Jonathan H. Badger, Ramana Madupu, Naomi L. Ward, Jonathan A. Eisen posted to bacteria genome sequence thermomicrobium thermophily by neils on 2009-01-17 02:22:57 as along with 2 people kiekyon AaronDarling
	Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4192. by Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, et al.Athanasios Lykidis, Sean D. Hooper, Hui Sun, Victor Kunin, Alla Lapidus, Philip Hugenholtz, Bharat Patel, Nikos C. Kyrpides posted to analysis bacteria genomics halophile halothermothrix sequence thermophily by neils on 2009-01-15 23:46:43 as
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted to compression data genome sequence software by neils on 2009-01-15 23:38:12 as along with 26 people and 3 groups daforerog hzoltan idonaldson kshameer operon guhjy druvus n00c dnewburger djkt mmartin sobolevnrm jfr psique cisevol GeeSharpMinor dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley baker-group BergmanLab Bioinformatics
	The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus) [My Copy] Genome Research (2009) by Webb Miller, Daniela I. Drautz, Jan E. Janecka, et al.Arthur M. Lesk, Aakrosh Ratan, Lynn P. Tomsho, Mike Packard, Yeting Zhang, Lindsay R. mcclellan, Ji Qi, Fangqing Zhao, Thomas, Love Dalén, Juan L. Arsuaga, Per, Daniel H. Huson, Kristofer M. Helgen, William J. Murphy, Anders Götherström, Stephan C. Schuster posted to australia genome mitochondria sequence thylacine by neils on 2009-01-14 03:46:14 as
	Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases [My Copy] Nucl. Acids Res. (12 January 2009), gkn1008. by Gil-Mi Ryu, Pamela Song, Kyu-Won Kim, Kyung-Soo Oh, Keun-Joon Park, Jong H. Kim posted to analysis genomics kinase phosphorylation protein sequence variation by neils on 2009-01-14 02:00:37 as along with 1 person renatomilani
	Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins [My Copy] BMC Genomics, Vol. 10, No. 1. (2009) by Raghu, Boojala posted to analysis bacteria comparative mesophily protein psychrophily sequence by neils on 2009-01-08 23:04:51 as along with 3 people idoerg gpcr kshameer
	The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea [My Copy] J. Bacteriol. (5 January 2009), JB.01448-08. by Camilla L. Nesbo, Eric Bapteste, Bruce Curtis, et al.Hakon Dahle, Philippe Lopez, Dave Macleod, Marlena Dlutek, Sharen Bowman, Olga Zhaxybayeva, Nils-Kare Birkeland, Ford W. Doolittle posted to archaea bacteria genome lgt phylogeny sequence thermosipho by neils on 2009-01-07 23:34:45 as
	Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 3. by Mark McClain, Carrie Shaffer, Dawn Israel, Richard Peek, Timothy Cover posted to analysis bacteria cancer disease genomics helicobacter human sequence by neils on 2009-01-05 23:56:10 as along with 2 people disrael imtechnology
	Acidithiobacillus ferrooxidans Metabolism: From Genome Sequence to Industrial Applications [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Jorge Valdes, Inti Pedroso, Raquel Quatrini, et al.Robert Dodson, Herve Tettelin, Robert Blake, Jonathan Eisen, David Holmes posted to acidithiobacillus bacteria bioleaching genomics industry sequence by neils on 2008-12-11 13:13:02 as
	Insights into the genome sequence of a free-living Kinetoplastid: Bodo saltans (Kinetoplastida: Euglenozoa). [My Copy] BMC Genomics, Vol. 9 (09 December 2008), 594. by Andrew, Matthew Berriman posted to bodo euglena genome kinetoplastid sequence by neils on 2008-12-10 00:21:25 as
	c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Katerina Kechris, Hao Li posted to bioinformatics correlation expression motif sequence by neils on 2008-11-29 05:55:22 as along with 6 people tmarscha heliopais GustavoLacerda maximilianh druvus Md_2007
	The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [My Copy] Nucl. Acids Res. (12 November 2008), gkn879. by J. R. Cole, Q. Wang, E. Cardenas, et al.J. Fish, B. Chai, R. J. Farris, A. S. Kulam-Syed-Mohideen, D. M. Mcgarrell, T. Marsh, G. M. Garrity, J. M. Tiedje posted to 16s bioinformatics database ribosome sequence software by neils on 2008-11-13 10:38:27 as along with 1 person vpittet
	A genomic analysis of the archaeal system Ignicoccus hospitalis: Nanoarchaeum equitans [My Copy] Genome Biology, Vol. 9, No. 11. (2008) by Mircea Podar, Iain Anderson, Kira Makarova, et al.James Elkins, Natalia Ivanova, Mark Wall, Athanasios Lykidis, Konstantinos Mavrommatis, Hui Sun, Matthew Hudson, Wenqiong Chen, Cosmin Deciu, Don Hutchison, Jonathan Eads, Abraham Anderson, Fillipe Fernandes, Ernest Szeto, Alla Lapidus, Nikos Kyrpides, Milton Saier, Paul Richardson, Reinhard Rachel, Harald Huber, Jonathan Eisen, Eugene Koonin, Martin Keller, Karl Stetter posted to archaea genomics ignicoccus nanoarcheum sequence symbiosis by neils on 2008-11-10 23:37:29 as
	Identification of the idiosyncratic bacterial protein tyrosine kinase (BY-kinase) family signature [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2427-2430. by Fanny Jadeau, Emmanuelle Bechet, Alain J. Cozzone, Gilbert Deleage, Christophe Grangeasse, Christophe Combet posted to bacteria bioinformatics kinase protein-tyrosine sequence signature by neils on 2008-10-21 00:15:57 as
	HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot [My Copy] Nucl. Acids Res. (11 October 2008), gkn661. by Tania Lima, Andrea H. Auchincloss, Elisabeth Coudert, et al.Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard de Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch posted to curation database family microbial protein proteome sequence by neils on 2008-10-12 23:45:04 as along with 1 person brianb
	Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures [My Copy] BMC Genomics, Vol. 9 (17 September 2008), 420. by David T. Pride, Thomas Schoenfeld posted to analysis archaea metagenomics sequence thermophily virus by neils on 2008-09-18 13:51:45 as
	Identification and correction of abnormal, incomplete and mispredicted proteins in public databases [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Alinda Nagy, Hedi Hegyi, Krisztina Farkas, et al.Hedvig Tordai, Evelin Kozma, Laszlo Banyai, Laszlo Patthy posted to bioinformatics database errors prediction protein sequence structure by neils on 2008-08-28 00:42:01 as along with 2 people grahamc piergiorgioduca
	Extracting sequence features to predict protein-DNA interactions: a comparative study [My Copy] Nucl. Acids Res., Vol. 36, No. 12. (1 July 2008), pp. 4137-4148. by Qing Zhou, Jun S. Liu posted to bioinformatics interaction prediction protein-dna sequence by neils on 2008-07-11 00:31:23 as along with 1 person maximilianh
	PROMALS3D web server for accurate multiple protein sequence and structure alignments [My Copy] Nucl. Acids Res. (24 May 2008), gkn322. by Jimin Pei, Ming Tang, Nick V. Grishin posted to alignment bioinformatics protein sequence structure webserver by neils on 2008-05-29 04:29:21 as
	Prediction of enzyme function by combining sequence similarity and protein interactions [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Jordi Espadaler, Narayanan Eswar, Enric Querol, et al.Francesc Aviles, Andrej Sali, Marc M. Renom, Baldomero Oliva posted to bioinformatics enzyme function interaction prediction protein-protein sequence by neils on 2008-05-28 01:05:07 as along with 2 people and 1 group shung aprildh31 Proteasome
	Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia [My Copy] Genome Res. (May 2008) by Claire Amadou, Geraldine Pascal, Sophie Mangenot, et al.Michelle Glew, Cyril Bontemps, Delphine Capela, Sebastien Carrere, Stephane Cruveiller, Carole Dossat, Aurelie Lajus, Marta Marchetti, Verena Poinsot, Zoe Rouy, Bertrand Servin, Maged Saad, Chantal Schenowitz, Valerie Barbe, Jacques Batut, Claudine Medigue, Catherine M. Boivin posted to cupriavidus genome genomics rhizobia sequence by neils on 2008-05-20 03:53:46 as
	The cytochromes c-550 of Paracoccus denitrificans and Thiosphaera pantotropha: a need for re-evaluation of the history of Paracoccus cultures [My Copy] FEMS Microbiology Letters, Vol. 137, No. 1. (1996), pp. 95-101. by Celia F. Goodhew, Graham W. Pettigrew, Bart Devreese, et al.Jozef Beeumen, Rob J. Spanning, Simon C. Baker, Neil Saunders, Stuart J. Ferguson, Ian P. Thompson posted to analysis cytochrome paracoccus sequence by neils on 2008-05-11 10:37:08 as
	Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution. [My Copy] Journal of molecular evolution, Vol. 59, No. 4. (October 2004), pp. 437-447. by T. H. Roberts, J. Hejgaard, N. F. Saunders, R. Cavicchioli, P. M. Curmi posted to analysis bioinformatics evolution sequence serpin by neils on 2008-05-11 10:11:58 as
	Discovering Sequence Motifs with Arbitrary Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (9 May 2008), e1000071. by Martin C. Frith, Neil F. W. Saunders, Bostjan Kobe, Timothy L. Bailey posted to bioinformatics discovery glam2 motifs sequence by neils on 2008-05-09 13:29:46 as along with 10 people thegoose foxpowa wowalz madreach gjuggler Stew dquest cabbagesofdoom Ema Evangelia
	Vertebrate Genomes Code Excess Proteins with Charge Periodicity of 28 Residues [My Copy] J Biochem, Vol. 143, No. 5. (1 May 2008), pp. 661-665. by Runcong Ke, Noriyuki Sakiyama, Ryusuke Sawada, Masashi Sonoyama, Shigeki Mitaku posted to charge genomics nuclear periodicity protein vertebrate sequence by neils on 2008-05-06 14:13:37 as
	Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Steven Salzberg, Daniel Sommer, Michael Schatz, et al.Adam Phillippy, Pablo Rabinowicz, Seiji Tsuge, Ayako Furutani, Hirokazu Ochiai, Arthur Delcher, David Kelley, Ramana Madupu, Daniela Puiu, Diana Radune, Martin Shumway, Cole Trapnell, Gudlur Aparna, Gopaljee Jha, Alok Pandey, Prabhu Patil, Hiromichi Ishihara, Damien Meyer, Boris Szurek, Valerie Verdier, Ralf Koebnik, Maxwell J. Dow, Robert Ryan, Hisae Hirata, Shinji Tsuyumu, Sang W. Lee, Pamela Ronald, Ramesh Sonti, Marie A. Van Sluys, Jan Leach, Frank White, Adam Bogdanove posted to evolution genome pathogen rice sequence xanthomonas by neils on 2008-05-02 00:28:46 as along with 1 person dakelley
	SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Lukasz Kurgan, Krzysztof Cios, Ke Chen posted to bioinformatics prediction protein sequence structure by neils on 2008-05-02 00:27:57 as
	Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641. by John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as along with 3 people chica mloewer Evangelia
	The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) [My Copy] Nature, Vol. 452, No. 7190. (24 April 2008), pp. 991-996. by Ray Ming, Shaobin Hou, Yun Feng, et al.Qingyi Yu, Alexandre Dionne-Laporte, Jimmy H. Saw, Pavel Senin, Wei Wang, Benjamin V. Ly, Kanako L. Lewis, Steven L. Salzberg, Lu Feng, Meghan R. Jones, Rachel L. Skelton, Jan E. Murray, Cuixia Chen, Wubin Qian, Junguo Shen, Peng Du, Moriah Eustice, Eric Tong, Haibao Tang, Eric Lyons, Robert E. Paull, Todd P. Michael, Kerr Wall, Danny W. Rice, Henrik Albert, Ming-Li Wang, Yun J. Zhu, Michael Schatz, Niranjan Nagarajan, Ricelle A. Acob, Peizhu Guan, Andrea Blas, Ching M. Wai, Christine M. Ackerman, Yan Ren, Chao Liu, Jianmei Wang, Jianping Wang, Jong-Kuk Na, Eugene V. Shakirov, Brian Haas, Jyothi Thimmapuram, David Nelson, Xiyin Wang, John E. Bowers, Andrea R. Gschwend, Arthur L. Delcher, Ratnesh Singh, Jon Y. Suzuki, Savarni Tripathi, Kabi Neupane, Hairong Wei, Beth Irikura, Maya Paidi, Ning Jiang, Wenli Zhang, Gernot Presting, Aaron Windsor, Rafael Navajas-Perez, Manuel J. Torres, Alex F. Feltus, Brad Porter, Yingjun Li, Max A. Burroughs, Ming-Cheng Luo, Lei Liu, David A. Christopher, Stephen M. Mount, Paul H. Moore, Tak Sugimura, Jiming Jiang, Mary A. Schuler, Vikki Friedman, Thomas Mitchell-Olds, Dorothy E. Shippen, Claude W. Depamphilis, Jeffrey D. Palmer, Michael Freeling, Andrew H. Paterson, Dennis Gonsalves, Lei Wang, Maqsudul Alam posted to genome genomics papaya plant sequence by neils on 2008-04-24 00:39:40 as along with 4 people seninp cmzmasek tanghaibao bpcusack
	ROC analysis: applications to the classification of biological sequences and 3D structures [My Copy] Brief Bioinform (11 January 2008), bbm064. by Paolo Sonego, Andras Kocsor, Sandor Pongor posted to classification roc sequence statistics structure by neils on 2008-04-23 13:46:17 as along with 4 people svozil cjeans nklee spsdigest
	Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis [My Copy] Genome Res. (2008) by Timothy P. Stinear, Torsten Seemann, Paul F. Harrison, et al.Grant A. Jenkin, John K. Davies, Paul, Zahra Abdellah, Claire Arrowsmith, Tracey Chillingworth, Carol Churcher, Kay Clarke, Ann Cronin, Paul Davis, Ian Goodhead, Nancy Holroyd, Kay Jagels, Angela Lord, Sharon Moule, Karen Mungall, Halina Norbertczak, Michael A. Quail, Ester Rabbinowitsch, Danielle Walker, Brian White, Sally Whitehead, Pamela, Roland Brosch, Lalita Ramakrishnan, Michael A. Fischbach, Julian Parkhill, Stewart T. Cole posted to genome marine mycobacterium pathogen sequence by neils on 2008-04-11 03:56:37 as
	Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 182. by Shibu Yooseph, Weizhong Li, Granger Sutton posted to bioinformatics classification clustering genomics metagenomics microbial sequence by neils on 2008-04-11 01:50:41 as along with 4 people skembel jmeppley druvus alexl
	Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches [My Copy] Bioinformatics (2008) by Marianne M. Lee, Michael K. Chan, Ralf Bundschuh posted to analysis bioinformatics psi-blast sequence statistics by neils on 2008-04-11 01:32:11 as
	Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (Mar 2008) by Feng J. Sun, Gustavo C. Anollés posted to archaea bioinformatics evolution phylogeny sequence structure trna virus by neils on 2008-03-12 02:45:33 as
	The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis [My Copy] Nature, Vol. 452, No. 7183. (6 March 2008), pp. 88-92. by F. Martin, A. Aerts, D. Ahren, et al.A. Brun, E. G. J. Danchin, F. Duchaussoy, J. Gibon, A. Kohler, E. Lindquist, V. Pereda, A. Salamov, H. J. Shapiro, J. Wuyts, D. Blaudez, M. Buee, P. Brokstein, B. Canback, D. Cohen, P. E. Courty, P. M. Coutinho, C. Delaruelle, J. C. Detter, A. Deveau, S. Difazio, S. Duplessis, L. Fraissinet-Tachet, E. Lucic, P. Frey-Klett, C. Fourrey, I. Feussner, G. Gay, J. Grimwood, P. J. Hoegger, P. Jain, S. Kilaru, J. Labbe, Y. C. Lin, V. Legue, F. Le Tacon, R. Marmeisse, D. Melayah, B. Montanini, M. Muratet, U. Nehls, H. Niculita-Hirzel, Oudot-Le M. P. Secq, M. Peter, H. Quesneville, B. Rajashekar, M. Reich, N. Rouhier, J. Schmutz, T. Yin, M. Chalot, B. Henrissat, U. Kues, S. Lucas, Y. Van de Peer, G. K. Podila, A. Polle, P. J. Pukkila, P. M. Richardson, P. Rouze, I. R. Sanders, J. E. Stajich, A. Tunlid, G. Tuskan, I. V. Grigoriev posted to bioinformatics genome laccaria mycorrhizae sequence symbiosis by neils on 2008-03-05 22:43:14 as along with 11 people and 1 group GustavoLacerda mKnobel stajich natstreet maren alexl biomcgary cmzmasek urgi jamselem manzanita Mycology
	The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 10913-10918. by B. A. Methé, K. E. Nelson, J. W. Deming, et al.B. Momen, E. Melamud, X. Zhang, J. Moult, R. Madupu, W. C. Nelson, R. J. Dodson, L. M. Brinkac, S. C. Daugherty, A. S. Durkin, R. T. DeBoy, J. F. Kolonay, S. A. Sullivan, L. Zhou, T. M. Davidsen, M. Wu, A. L. Huston, M. Lewis, B. Weaver, J. F. Weidman, H. Khouri, T. R. Utterback, T. V. Feldblyum, C. M. Fraser posted to colwellia for-thuber genome genomics psychrophily sequence by neils on 2008-01-25 06:53:04 as along with 4 people bpb gilda MeganBarnett min013

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znf	1
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