neils's software [96 articles] Export

Recent papers added to neils's library classified by the tag software. You can also see everyone's software.

	Head in the clouds: Re-imagining the experimental laboratory record for the web-based networked world [My Copy] Automated Experimentation, Vol. 1, No. 1. (2009), 3. by Cameron Neylon posted to web20 software review notebook eln by neils on 2009-10-30 01:29:06 as along with 10 people and 2 groups allysonlister pedromts kshameer CameronNeylon druvus jobadge niallhaslam dullhunk joaocarrico AJCann Science 2.0 / Open Science eLearning in Leicester
	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor posted to web statistics software microarray data-mining analysis by neils on 2009-10-28 23:00:22 as along with 4 people and 2 groups shikin sillitoe dswan heliopais Orengo Group Journal Picks Bioinformatics
	G-compass: A web-based comparative genome browser between human and other vertebrate genomes [My Copy] Bioinformatics (21 October 2009), btp594. by Yoshihiro Kawahara, Ryuichi Sakate, Akihiro Matsuya, et al.Katsuhiko Murakami, Yoshiharu Sato, Hao Zhang, Takashi Gojobori, Takeshi Itoh, Tadashi Imanishi posted to webserver software orthology genome browser by neils on 2009-10-25 01:31:32 as along with 4 people idonaldson kshameer operon druvus
	The gputools package enables GPU computing in R. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp608. by Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng posted to software r-project gpu by neils on 2009-10-25 01:30:47 as along with 5 people operon hughitt1 BlackPhoenix shigepong druvus
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to software short-read sequencing next-generation genome assembly by neils on 2009-10-02 00:06:10 as along with 10 people and 1 group djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus Mycology
	Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2617-2618. by Mathieu Clement-Ziza, Christophe Malabat, Christian Weber, et al.Ivan Moszer, Tero Aittokallio, Catherine Letondal, Sandrine Rousseau posted to software pathways network expression cytoscape by neils on 2009-09-28 00:14:20 as along with 4 people dswan sjcockell frohike druvus
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted to teaching software r-project by neils on 2009-08-29 02:34:26 as along with 61 people and 4 groups kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard AJCann thegoose dullhunk brianb silberbauer daforerog ppgardne druvus Bioinformatics - CRUK BergmanLab eLearning in Leicester Journal picks
	SubpathwayMiner: a software package for flexible identification of pathways. [My Copy] Nucleic acids research, Vol. 37, No. 19. (25 October 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to software r-project pathways data-mining by neils on 2009-08-26 23:40:09 as along with 6 people and 1 group davidalee Vincent_Rouilly ptrobajo irenas renatomilani brianb Orengo Group Journal Picks
	digeR: a graphical user interface R package for analyzing 2D-DIGE data [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3033-3034. by Yue Fan, T. Brendan Murphy, Watson posted to software r-project proteomics gui 2d-dige by neils on 2009-08-26 23:38:52 as along with 1 person brianb
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to statistics software r-project genomics comparative by neils on 2009-08-26 23:37:47 as along with 17 people and 1 group molnet-mna jperkins tonamswish dswan mayercd operon kshameer heliopais dolchan nuin ptrobajo sebastien_vigneau rdiaz cassj brianb natstreet druvus Orengo Group Journal Picks
	IMG ER: a system for microbial genome annotation expert review and curation [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2271-2278. by Victor M. Markowitz, Konstantinos Mavromatis, Natalia N. Ivanova, I-Min A. Chen, Ken Chu, Nikos C. Kyrpides posted to software microbiology img genomics curation annotation by neils on 2009-08-21 03:32:38 as along with 4 people kiekyon Thaverkamp natstreet druvus
	Statistical methods for gene set co-expression analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2780-2786. by YounJeong Choi, Christina Kendziorski posted to statistics software r-project coexpression by neils on 2009-08-20 00:38:32 as along with 7 people and 1 group jperkins ptrobajo natstreet heliopais dolchan zufar rdiaz Orengo Group Journal Picks
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualisation software next-generation genomics browser by neils on 2009-08-14 11:46:06 as along with 27 people and 2 groups hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich n00c torfinnnome nuin kshameer druvus natstreet BergmanLab Mycology
	Solutions for complex, multi data type and multi tool analysis: principles and applications of using workflow and pipelining methods. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 563 (2009), pp. 259-271. by R. E. Munro, Y. Guo posted to analysis data pipeline software workflow by neils on 2009-07-16 13:33:58 as along with 2 people brianb dullhunk
	WebArrayDB: cross-platform microarray data analysis and public data repository [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2425-2429. by Xiao-Qin Xia, Michael McClelland, Steffen Porwollik, Wenzhi Song, Xianling Cong, Yipeng Wang posted to analysis database microarray repository software webserver by neils on 2009-07-16 00:50:59 as along with 8 people ptrobajo lwaldron daforerog dswan natstreet guhjy brianb rschulz
	PRIDE Converter: making proteomics data-sharing easy [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 598-599. by Harald Barsnes, Juan A. Vizcaino, Ingvar Eidhammer, Lennart Martens posted to correspondence data proteomics sharing software by neils on 2009-07-10 01:19:22 as along with 6 people robert reyez druvus guhjy brianb sjcockell
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to ajax browser genome javascript software web by neils on 2009-07-02 02:14:47 as along with 28 people and 2 groups hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard operon BergmanLab Journal picks
	A-MADMAN: annotation-based microarray data meta-analysis tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 June 2009), 201. by Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, et al.Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi posted to annotation meta-analysis microarray software web by neils on 2009-06-30 00:09:53 as along with 6 people and 1 group daforerog ptrobajo dswan bertelsen guhjy shikin Bioinformatics
	penalizedSVM: a R-package for feature selection SVM classification [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1711-1712. by Natalia Becker, Wiebke Werft, Grischa Toedt, Peter Lichter, Axel Benner posted to classification r-project software svm by neils on 2009-06-18 00:10:56 as along with 10 people and 2 groups sotacam ollieredfernwork rdiaz anf lwaldron dswan TRHvidsten operon phoenixzxl giovanni Orengo Group Journal Picks Bioinformatics
	Assessing statistical significance in microarray experiments using the distance between microarrays. [My Copy] PloS one, Vol. 4, No. 6. (16 June 2009), e5838. by Douglas Hayden, Peter Lazar, David Schoenfeld, Inflammation and the Host Response to Injury Investigators posted to distance microarray r-project significance software statistics by neils on 2009-06-17 00:19:40 as along with 4 people guhjy rdiaz renatomilani arsyed
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted to comparison metagenomics software statistics visualisation by neils on 2009-06-12 00:28:47 as along with 13 people and 3 groups carlk polivares inesdesantiago taylor73 ollieredfernwork nuin stajich sriesenfeld idoerg guhjy chrisamiller jmeppley druvus Orengo Group Journal Picks Mycology iSEEM
	Importing ArrayExpress datasets into R/Bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2092-2094. by Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, et al.Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber posted to arrayexpress bioconductor database ebi microarray software r-project by neils on 2009-06-09 23:57:39 as along with 11 people and 2 groups daforerog jperkins shikin ealloza pkonings lwaldron dswan guhjy chrisamiller nuin phoenixzxl Orengo Group Journal Picks Bioinformatics
	UTGB toolkit for personalized genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1856-1861. by Taro L. Saito, Jun Yoshimura, Shin Sasaki, et al.Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu, Shinichi Morishita posted to browser genomics software webserver by neils on 2009-06-09 00:41:38 as along with 8 people natstreet druvus gdb reyez daforerog guhjy nuin taroleo
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to browser genomics integration software r-project by neils on 2009-05-27 00:18:35 as along with 16 people and 3 groups daveGerrard iris42 guhjy aprasad dswan cisevol shikin inesdesantiago daforerog ppgardne natstreet nuin brianb kshameer chrisamiller druvus Bioinformatics BergmanLab Journal picks
	WebLab: a data-centric, knowledge-sharing bioinformatic platform [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W33-39. by Xiaoqiao Liu, Jianmin Wu, Jun Wang, et al.Xiaochuan Liu, Shuqi Zhao, Zhe Li, Lei Kong, Xiaocheng Gu, Jingchu Luo, Ge Gao posted to analysis bioinformatics literature software webserver workflow by neils on 2009-05-23 06:33:26 as along with 14 people applebyb fgibson abhishek_tiwari pekrau dullhunk leemond31 pininforthefjords nuin daforerog druvus operon guhjy psique renatomilani
	SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W109-114. by Pablo Minguez, Stefan Gotz, David Montaner, Fatima Al-Shahrour, Joaquin Dopazo posted to analysis interaction network protein-protein software statistics webserver by neils on 2009-05-21 00:48:47 as along with 9 people sgoetz guhjy yaredo Scis0000002 kiekyon daforerog renatomilani sjcockell kshameer
	MIMAS 3.0 is a Multiomics Information Management and Annotation System. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 151. by Alexandre Gattiker, Leandro Hermida, Robin Liechti, et al.Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig posted to annotation data information management microarray software by neils on 2009-05-19 00:14:10 as along with 9 people frohike daforerog guhjy ddunbar druvus allysonlister AlexBateman kshameer barriot
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted to bioinformatics biopython library python software by neils on 2009-05-15 01:03:12 as along with 37 people and 9 groups Geknitics pekrau Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose oteri cmzmasek jwm guhjy AlexBateman daforerog ltitodem Thaverkamp sobolevnrm psique dswan dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus jago kshameer operon svozil Systems_Biology Computational_Systems_Biology Structural Biology Group TorVergata Journal picks baker-group Bioinformatics Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services
	Orphelia: predicting genes in metagenomic sequencing reads [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W101-105. by Katharina J. Hoff, Thomas Lingner, Peter Meinicke, Maike Tech posted to gene metagenomics prediction sequencing software by neils on 2009-05-10 23:48:30 as along with 4 people mlangill sharpton Thaverkamp jmeppley
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to mapping next-generation review sequencing software by neils on 2009-05-10 23:47:19 as along with 28 people and 5 groups cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Infernal 1.0: inference of RNA alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 10. (15 May 2009), pp. 1335-1337. by Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy posted to alignment hmm infernal rfam rna search software by neils on 2009-05-07 00:56:36 as along with 6 people and 1 group reyez operon djkt nuin natstreet druvus iSEEM
	The Proteios Software Environment - An extensible multi-user platform for management and analysis of proteomics data [My Copy] Journal of Proteome Research, Vol. 0, No. ja. (0000) by Fredrik Levander, Jari Hakkinen, Gregory Vincic, Olle Mansson, Kristofer Warell posted to analysis opensource proteomics software webserver by neils on 2009-05-07 00:55:34 as along with 5 people alyssaporter operon sjcockell guhjy brianb
	Low Cost, Scalable Proteomics Data Analysis Using Amazon’s Cloud Computing Services and Open Source Search Algorithms [My Copy] Journal of Proteome Research, Vol. 8, No. 6. (5 June 2009), pp. 3148-3153. by Brian D. Halligan, Joey F. Geiger, Andrew K. Vallejos, Andrew S. Greene, Simon N. Twigger posted to amazon cloud-computing ec2 proteomics software by neils on 2009-05-07 00:54:29 as along with 5 people walshtp Scis0000002 nedwards sjcockell brianb
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly next-generation sequencing short-read software by neils on 2009-04-23 04:43:03 as along with 26 people and 2 groups jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme natstreet AaronDarling druvus rpatward dswan stajich jbhiatt erikarner BergmanLab Mycology
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to alignment next-generation reads sequencing software by neils on 2009-04-20 00:32:42 as along with 4 people torfinnnome jmeppley robsyme svenrahmann
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to high-throughput mapping mapreduce next-generation sequencing software by neils on 2009-04-09 00:26:44 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus KCL & UCL Bioinformatics Bioinformatics
	PAnnBuilder: An R Package for Assembling Proteomic Annotation Data. [My Copy] Bioinformatics (Oxford, England) (23 February 2009) by Hong Li, Guohui Ding, Lu Xie, Yixue Li posted to annotation database proteomics software r-project by neils on 2009-04-09 00:03:36 as along with 7 people jfr lwaldron guhjy nuin renatomilani brianb sjcockell
	The UCSC Cancer Genomics Browser. [My Copy] Nature methods, Vol. 6, No. 4. (April 2009), pp. 239-240. by Jingchun Zhu, J. Zachary Sanborn, Stephen Benz, et al.Christopher Szeto, Fan Hsu, Robert M. Kuhn, Donna Karolchik, John Archie, Marc E. Lenburg, Laura J. Esserman, W. James Kent, David Haussler, Ting Wang posted to browser cancer genomics software visualisation webserver by neils on 2009-04-07 01:28:33 as along with 3 people jfr guhjy chrisamiller
	KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor. [My Copy] Bioinformatics (Oxford, England) (23 March 2009) by Jitao David D. Zhang, Stefan Wiemann posted to bioconductor kegg pathway software r-project by neils on 2009-03-25 21:48:57 as along with 2 people svenrahmann brianb
	A suite of Perl modules for handling microarray data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 8. (15 April 2008), pp. 1102-1103. by J. A. Morris, S. A. Gayther, I. J. Jacobs, C. Jones posted to bioinformatics microarray module perl software by neils on 2009-03-13 01:45:47 as along with 7 people isimpson daforerog guhjy wisdom_love brianb jfr AlexanderPico
	ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses. [My Copy] BMC bioinformatics, Vol. 9 Suppl 6 (2008) by Todd H. Stokes, J. T. Torrance, Henry Li, May D. Wang posted to meta-analysis microarray public repository software wiki by neils on 2009-03-12 04:40:41 as along with 9 people daforerog PaoloRomano shikin jfr lptolik yas guhjy thomaskelder GeeSharpMinor
	GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. [My Copy] Bioinformatics (12 May 2007) by Sean Davis, Paul S S. Meltzer posted to bioconductor geo microarray software statistics r-project by neils on 2009-03-09 04:58:49 as along with 10 people and 1 group brianb dswan shikin guhjy jfr ugengma giovenko ablejec zhouyu bertelsen Bioinformatics
	VASCo: computation and visualization of annotated protein surface contacts [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 32. by Georg Steinkellner, Robert Rader, Gerhard Thallinger, Christoph Kratky, Karl Gruber posted to contact protein software structure surface by neils on 2009-01-26 03:21:15 as along with 5 people richardbickerton superpyrin higueruelo kshameer svozil
	Genome Projector: zoomable genome map with multiple views. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Kazuharu Arakawa, Satoshi Tamaki, Nobuaki Kono, et al.Nobuhiro Kido, Keita Ikegami, Ryu Ogawa, Masaru Tomita posted to ajax api genomics google software visualisation by neils on 2009-01-24 06:20:32 as along with 11 people dokky jfr idoerg guhjy daforerog smiddha nuin natstreet druvus behindtherabbit coela
	The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 281-283. by Oliver S. Davis, Robert Plomin, Leonard C. Schalkwyk posted to association bioinformatics genomics microarray software statistics r-project by neils on 2009-01-15 23:47:28 as along with 7 people maren jfr Zephyrus daforerog guhjy djkt pkonings
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted to compression data genome sequence software by neils on 2009-01-15 23:38:12 as along with 25 people and 3 groups hzoltan idonaldson kshameer operon guhjy druvus n00c dnewburger djkt mmartin sobolevnrm jfr psique cisevol GeeSharpMinor dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley baker-group BergmanLab Bioinformatics
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to annotation bioinformatics enrichment genomics review software by neils on 2009-01-10 02:07:31 as along with 44 people and 2 groups darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Stew inesdesantiago heliopais AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell Bioinformatics - CRUK ConklinLab
	GenomeGraphs: integrated genomic data visualization with R. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Steffen Durinck, James Bullard, Paul T. Spellman, Sandrine Dudoit posted to genomics software statistics visualisation r-project by neils on 2009-01-06 23:40:50 as along with 18 people and 1 group operon daforerog jmeppley klo psique rdiaz guhjy nuin lptolik thomaskelder pkonings natstreet polivares Zephyrus druvus barriot cisevol GeeSharpMinor BergmanLab
	KEGG spider: interpretation of genomics data in the context of the global gene metabolic network [My Copy] Genome Biology, Vol. 9, No. 12. (2008), R179. by Alexey Antonov, Sabine Dietmann, Hans Mewes posted to genomics kegg metabolism network software webserver by neils on 2008-12-20 02:00:45 as along with 14 people and 2 groups Thaverkamp cgaugain ptrobajo jfr bluto sylvainforet Stew Cortel Zephyrus guhjy cmzmasek fgibson dullhunk druvus Bioinformatics - CRUK Roswell Cancer Crosstalk
	GPAT: retrieval of genomic annotation from large genomic position datasets. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by A. Krebs, M. Frontini, L. Tora posted to annotation chip genomics microarray software transcriptomics webserver by neils on 2008-12-16 03:04:37 as along with 5 people and 1 group guhjy abizar druvus ghattem fhalbrit SIMR bioinformatics

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conformation	8
conservation	8
curation	8
design	8
drug	8
eukarya	8
family	8
microbiome	8
mutation	8
nmr	8
paracoccus	8
plasmodium	8
research	8
ribosome	8
standards	8
thermal	8
web	8
assembly	7
biology	7
calcium	7
catalysis	7
catalytic	7
community	7
computer	7
crispr	7
gut	7
hmm	7
inhibitor	7
kinome	7
ligand	7
lipid	7
management	7
mice	7
ncrna	7
nucleus	7
receptor	7
repository	7
resistance	7
rio	7
snp	7
user-computer	7
web20	7
activity	6
bioconductor	6
chromatography	6
editorial	6
energy	6
environment	6
exon	6
factors	6
folding	6
interactome	6
kinetics	6
lc-ms	6
mhc	6
mirna	6
mitochondria	6
phosphopeptides	6
polymerase	6
rat	6
recombinant	6
serine	6
structure-activity	6
surface	6
symbiosis	6
system	6
adenosine	5
association	5
bibtex-import	5
biological	5
candidate	5
chain	5
channel	5
clustering	5
dataset	5
disorder	5
fossil	5
fusion	5
growth	5
haem	5
health	5
importin	5
iron	5
jnk	5
library	5
line	5
literature	5
machine-learning	5
male	5
marine	5
mesophily	5
meta-analysis	5
methanococcoides	5
mitogen-activated	5
module	5
motif	5
openaccess	5
opensource	5
palaeontology	5
parasitism	5
pathway	5
pdb	5
protein-tyrosine	5
pseudomonas	5
publication	5
purification	5
quality	5
quantitation	5
random-forest	5
reductase	5
residue	5
search	5
secondary	5
service	5
sharing	5
splicing	5
technology	5
text-mining	5
topology	5
trna	5
two-component	5
amp-dependent	4
antibiotic	4
arabidopsis	4
binary	4
commentary	4
composition	4
conference	4
cos	4
cyanobacteria	4
cyclic	4
distribution	4
eukaryotic	4
fungi	4
gwa	4
halophile	4
hyperthermophily	4
influenza	4
information	4
kegg	4
map	4
markov	4
methanogen	4
methanosarcinaceae	4
microscopy	4
multivariate	4
mycobacterium	4
nanoarcheum	4
nitrite	4
oxide	4
p110	4
parallel	4
pathogenesis	4
perl	4
practice	4
prion	4
protein-dna	4
pseudogene	4
report	4
reproducibility	4
selection	4
semantic	4
simulation	4
single-molecule	4
spectroscopy	4
src	4
streptococcus	4
techniques	4
tools	4
triphosphate	4
tyrosine	4
virulence	4
wiki	4
2d-dige	3
affinity	3
agriculture	3
api	3
apis	3
autism	3
bacillus	3
base	3
beta-adrenergic	3
biochemical	3
biofilm	3
biogenesis	3
biophysics	3
brain	3
career	3
cassette	3
chemical	3
climate	3
clinical	3
cluster	3
collaboration	3
computational-biology	3
contact	3
control	3
correspondence	3
cultured	3
degradation	3
dimerization	3
dinosaur	3
diversity	3
dna-binding	3
drosophila	3
dynamics	3
ecoli	3
electron-microscopy	3
errors	3
fish	3
graph	3
graphics	3
heat-shock	3
helicobacter	3
helix	3
hgt	3
high-throughput	3
histone	3
humour	3
image	3
impact-factor	3
import	3
inbred	3
introduction	3
isoenzymes	3
isoforms	3
journals	3
lims	3
linear	3
macrophage	3
malaria	3
methanococcus	3
migration	3
mouse	3
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nitric	3
normalization	3
npc	3
of	3
ontology	3
orfan	3
orthology	3
phylogenetics	3
physiology	3
pipeline	3
population	3
post-translational	3
probability	3
processing	3
programming	3
psi	3
psychrobacter	3
public	3
publishing	3
pyrosequencing	3
relationship	3
response	3
results	3
retrieval	3
roc	3
saccharomyces	3
screening	3
sensitivity	3
serine-protease	3
signature	3
streptomyces	3
sulfolobus	3
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tag	3
target	3
temperature	3
thermus	3
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transfer	3
translation	3
transport	3
ubiquitin	3
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water	3
xml	3
adaptor	2
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ajax	2
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anchor	2
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arginine	2
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arxiv	2
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bos-taurus	2
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c57bl	2
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cdk	2
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cercopithecus	2
cerevisiae	2
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checkpoint	2
chip	2
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coevolution	2
coexpression	2
cold	2
coli	2
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complex-i	2
compounds	2
computer-assisted	2
consensus	2
context	2
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correlation	2
covariance	2
cow	2
cryo-em	2
curve	2
cycle	2
dengue	2
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dog	2
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electron	2
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escherichia	2
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extracellular	2
feature	2
female	2
fold	2
fragments	2
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friendfeed	2
global	2
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gmp-dependent	2
google	2
g-protein-coupled	2
greenland	2
haloferax	2
history	2
horizontal	2
hupo	2
identification	2
ignicoccus	2
illumina	2
immunology	2
industry	2
infrastructure	2
insect	2
intelligence	2
intracellular	2
introns	2
in-vivo	2
ismb	2
javascript	2
lead	2
leucine	2
lgt	2
lichen	2
lie	2
ligases	2
lrr	2
lymphocyte	2
maldi	2
mammal	2
matrix	2
md	2
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mobile	2
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ms-ms	2
multiprotein	2
muscle	2
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nitrous	2
nnr	2
obesity	2
operon	2
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osmotic	2
p21-activated	2
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pattern	2
pdz	2
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pfam	2
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polo	2
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python	2
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rhodopsin	2
rice	2
ruby	2
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salmon	2
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sensing	2
serpin	2
sh3	2
short-read	2
similarity	2
site-directed	2
snake	2
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145-trisphosphate	1
16s	1
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454	1
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abl	1
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clock	1
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cms	1
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zymomonas	1

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