CiteULike: neils's specificity [35 articles]

	The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1293-1299. by Hao Zhang, Ole Lund, Morten Nielsen posted to binding mhc peptide prediction specificity by neils on 2009-07-12 13:19:59 as along with 4 people niallhaslam beapen reyez carlosjavierna
	Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behavior [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Z. Nevin Gerek, Ozlem Keskin, S. Banu Ozkan posted to domain dynamics pdz peptide specificity by neils on 2009-07-10 01:21:31 as
	From Promiscuity to Precision: Protein Phosphatases Get a Makeover [My Copy] Molecular Cell, Vol. 33, No. 5. (13 March 2009), pp. 537-545. by David M. Virshup, Shirish Shenolikar posted to phosphatase review specificity substrate by neils on 2009-07-02 03:31:36 as along with 3 people Yoko kiekyon coela
	Prediction of kinase-specific phosphorylation sites using Conditional Random Fields. [My Copy] Bioinformatics (Oxford, England) (20 October 2008) by Thanh Hai H. Dang, Koenraad Van V. Leemput, Alain Verschoren, Kris Laukens posted to bioinformatics kinase phosphorylation prediction random-fields specificity by neils on 2008-12-05 01:11:06 as along with 3 people gulkur coela guhjy
	Prediction of specificity-determining residues for small-molecule kinase inhibitors [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Daniel Caffrey, Elizabeth Lunney, Deborah Moshinsky posted to bioinformatics inhibitor kinase prediction protein residue specificity by neils on 2008-11-26 01:00:24 as along with 2 people reyez renatomilani
	Molecular Bases for the Recognition of Short Peptide Substrates and Cysteine-Directed Modifications of Human Insulin-Degrading Enzyme [My Copy] Biochemistry (6 November 2008) by Enrico Malito, Luis A. Ralat, Marika Manolopoulou, Julie L. Tsay, Natasha L. Wadlington, Wei-Jen Tang posted to cysteine degradation enzymology insulin peptide specificity substrate by neils on 2008-11-07 01:58:11 as
	SDR: a database of predicted specificity-determining residues in proteins [My Copy] Nucl. Acids Res. (16 October 2008), gkn716. by Jason E. Donald, Eugene I. Shakhnovich posted to bioinformatics database function prediction protein residue specificity structure by neils on 2008-10-17 09:05:36 as
	PMAP: databases for analyzing proteolytic events and pathways [My Copy] Nucl. Acids Res. (8 October 2008), gkn683. by Yoshinobu Igarashi, Emily Heureux, Kutbuddin S. Doctor, et al.Priti Talwar, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Michael Blinov, Salmaz S. Ibragimova, Sarah Boyd, Boris Ratnikov, Piotr Cieplak, Adam Godzik, Jeffrey W. Smith, Andrei L. Osterman, Alexey M. Eroshkin posted to database pathways protease specificity substrate by neils on 2008-10-09 03:20:27 as
	Non-functional phosphorylations? [My Copy] Trends in Biochemical Sciences, Vol. In Press, Corrected Proof by Gustav E. Lienhard posted to evolution hypothesis phosphorylation specificity by neils on 2008-07-06 07:44:14 as along with 1 person brianb
	Contextual Specificity in Peptide-Mediated Protein Interactions [My Copy] PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2524. by Amelie Stein, Patrick Aloy posted to binding context energy interaction peptide protein-protein specificity by neils on 2008-07-06 01:23:12 as along with 3 people phoenixzxl bpcusack zdai
	Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites [My Copy] BMC Bioinformatics, Vol. 9 (26 May 2008), 245. by Neil F. W. Saunders, Ross I. Brinkworth, Thomas Huber, Bruce E. Kemp, Bostjan Kobe posted to bioinformatics prediction predikin specificity substrate kinase by neils on 2008-05-27 05:06:18 as along with 1 person guhjy
	Structural Basis of Substrate Recognition in Thiopurine S-Methyltransferase [My Copy] Biochemistry (17 May 2008) by Yi Peng, Qiping Feng, Dennis Wilk, et al.Araba A. Adjei, Oreste E. Salavaggione, Richard M. Weinshilboum, Vivien C. Yee posted to enzyme specificity structure-activity substrate by neils on 2008-05-19 02:49:04 as
	The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information [My Copy] Nucl. Acids Res. (13 May 2008), gkn279. by Neil F. Saunders, Bostjan Kobe posted to bioinformatics peptide prediction predikin specificity webserver kinase by neils on 2008-05-14 03:57:42 as
	Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm [My Copy] PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008) by Ignacio E. Sánchez, Pedro Beltrao, Francois Stricher, et al.Joost Schymkowitz, Jesper F. Borg, Frederic Rousseau, Luis Serrano posted to bioinformatics interaction protein-protein sh2 specificity by neils on 2008-04-09 02:23:44 as
	Yeast Polo-like kinase substrates are nailed with the right tools [My Copy] Genome Biology, Vol. 9, No. 1. (2008) by Vincent Archambault, David Glover posted to bioinformatics polo screen specificity yeast kinase substrate by neils on 2008-01-31 00:13:28 as
	Structure of the Human Protein Kinase MPSK1 Reveals an Atypical Activation Loop Architecture. [My Copy] Structure, Vol. 16, No. 1. (January 2008), pp. 115-124. by J. Eswaran, A. Bernad, J. M. Ligos, et al.B. Guinea, J. E. Debreczeni, F. Sobott, S. A. Parker, R. Najmanovich, B. E. Turk, S. Knapp posted to activation activity kinase loop mpsk1 specificity structure by neils on 2008-01-12 01:37:14 as
	When is a lipid kinase not a lipid kinase? When it is a protein kinase. [My Copy] Cell, Vol. 83, No. 1. (6 October 1995), pp. 1-4. by T. Hunter posted to kinase lipid pi3k review specificity by neils on 2008-01-08 09:48:22 as
	PI 3-kinase is a dual specificity enzyme: autoregulation by an intrinsic protein-serine kinase activity. [My Copy] EMBO J, Vol. 13, No. 3. (1 February 1994), pp. 522-533. by R. Dhand, I. Hiles, G. Panayotou, et al.S. Roche, M. J. Fry, I. Gout, N. F. Totty, O. Truong, P. Vicendo, K. Yonezawa posted to p110 p85 phosphorylation pi3k specificity kinase by neils on 2008-01-08 09:43:23 as
	Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment. [My Copy] Cell Cycle, Vol. 4, No. 1. (Jan 2005), pp. 52-56. by Guozhi Zhu, Yin Liu, Stephen Shaw posted to activation article-predikin enzyme fragments interaction mapping peptide phosphorylation protein sequence signal specificity substrate transduction amino-acid kinase human by neils on 2007-12-04 03:22:14 as
	GPS: a comprehensive www server for phosphorylation sites prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187. by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao posted to analysis article-nar article-predikin internet microfilament phosphorylation protein sequence software specificity substrate tissue kinase phosphoprotein by neils on 2007-12-04 03:22:14 as
	Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450. [My Copy] J Mol Biol, Vol. 322, No. 4. (Sep 2002), pp. 785-797. by James E. Sillibourne, Diane M. Milne, Mikiko Takahashi, Yoshitaka Ono, David W. Meek posted to adaptor aethiops anchor article-predikin carrier casein catalysis centrosome cercopithecus cos cytoskeletal data fractions fragments fusion isoenzymes kinase male molecular peptide precipitin protein recombinant sequence signal specificity structure subcellular substrate tertiary tests transducing amino-acid rat cell animal human by neils on 2007-12-04 03:22:14 as
	How do protein kinases recognize their substrates? [My Copy] Biochim Biophys Acta, Vol. 1314, No. 3. (Dec 1996), pp. 191-225. by L. A. Pinna, M. Ruzzene posted to article-predikin consensus data library molecular peptide phosphorylation protein sequence specificity substrate amino-acid kinase animal by neils on 2007-12-04 03:22:14 as
	Protein disorder prediction: implications for structural proteomics. [My Copy] Structure, Vol. 11, No. 11. (Nov 2003), pp. 1453-1459. by Rune Linding, Lars J. Jensen, Francesca Diella, Peer Bork, Toby J. Gibson, Robert B. Russell posted to article-nar article-predikin circular computer conformation crystallography dichroism homology magnetic models neural protein proteome resonance sensitivity specificity spectroscopy src statistics temperature theoretical topic ultraviolet x-ray domain ray ligand network by neils on 2007-12-04 03:22:13 as
	Identification of residues which regulate activity of the STE20-related kinase hMINK. [My Copy] Biochem Biophys Res Commun, Vol. 300, No. 3. (Jan 2003), pp. 694-698. by Jaeseung Lim, Andrew Lennard, Paul W. Sheppard, Stuart Kellie posted to antibody article-predikin cell cerevisiae cloning data jnk kidney line mitogen-activated molecular mutagenesis organ phosphorylation potassium protein protein-serine-threonine relationship saccharomyces sequence site-directed specificity structure structure-activity tertiary voltage-gated amino-acid kinase channel human by neils on 2007-12-04 03:22:13 as
	Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. [My Copy] J Mol Biol, Vol. 305, No. 3. (Jan 2001), pp. 567-580. by A. Krogh, B. Larsson, G. von Heijne, E. L. Sonnhammer posted to article-nar article-predikin computational design genome internet markov membrane of plant protein reproducibility research results secondary sensitivity software solubility sorting specificity structure bacteria chain fungi database porin signal by neils on 2007-12-04 03:22:13 as
	Substrate specificity of protein kinases and computational prediction of substrates. [My Copy] Biochim Biophys Acta, Vol. 1754, No. 1-2. (Dec 2005), pp. 200-209. by Bostjan Kobe, Thorsten Kampmann, Jade K. Forwood, Pawel Listwan, Ross I. Brinkworth posted to article-nar article-predikin binding biology computational models molecular phosphoprotein phosphorylation protein secondary sites specificity structure substrate kinase peptide phosphatase by neils on 2007-12-04 03:22:13 as
	Biochemical characterization of the tobacco 42-kD protein kinase activated by osmotic stress. [My Copy] Plant Physiol, Vol. 136, No. 2. (Oct 2004), pp. 3255-3265. by Anna Kelner, Izabela Pekala, Szymon Kaczanowski, Grazyna Muszynska, Grahame D. Hardie, Grazyna Dobrowolska posted to activation adenosine article-predikin calcium chlorides data enzyme evolution homology kinase magnesium manganese molecular monophosphate osmotic phylogeny pressure protein sequence specificity substrate tobacco water amino-acid inhibitor by neils on 2007-12-04 03:22:13 as
	C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats. [My Copy] J Biol Chem, Vol. 279, No. 24. (Jun 2004), pp. 24957-24964. by Janice C. Jones, Hemali P. Phatnani, Timothy A. Haystead, Justin A. Macdonald, Munir S. Alam, Arno L. Greenleaf posted to article-predikin data molecular monoclonal phosphorylation polymerase protein repetitive rna saccharomycetales sequence serine specificity substrate amino-acid kinase antibody by neils on 2007-12-04 03:22:13 as
	Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors. [My Copy] J Biol Chem, Vol. 279, No. 6. (Feb 2004), pp. 4612-4624. by Katrin de Graaf, Paul Hekerman, Oliver Spelten, et al.Andreas Herrmann, Len C. Packman, Konrad Büssow, Gerhard M. Newen, Walter Becker posted to arginine article-predikin base cell complementary cos data dna factors fusion male mice molecular nucleus phosphorylation protein protein-serine-threonine protein-tyrosine recombinant rna sequence serine specificity splicing structure substrate tertiary transcription amino-acid rat kinase animal human cyclin by neils on 2007-12-04 03:22:12 as
	Phosphorylation of the mitochondrial protein Sab by stress-activated protein kinase 3. [My Copy] Biochem Biophys Res Commun, Vol. 319, No. 1. (Jun 2004), pp. 130-137. by Naomi W. Court, Ivana Kuo, Oonagh Quigley, Marie A. Bogoyevitch posted to adaptor article-predikin binding cardiac carrier cell glutathione jnk kinase line map mitochondria mitogen-activated mutagenesis mutation myocytes phosphorylation protein serine signal signaling site-directed specificity structure substrate system tertiary transducing transferase rat human animal by neils on 2007-12-04 03:22:12 as
	Protein kinases associated with the yeast phosphoproteome. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by Ross I. Brinkworth, Alan L. Munn, Bostjan Kobe posted to alignment analysis article-predikin cerevisiae data interaction mapping molecular phosphorylation protein proteome saccharomyces sequence specificity substrate amino-acid fungi kinase phosphoprotein by neils on 2007-12-04 03:22:12 as
	Uses for JNK: the many and varied substrates of the c-Jun N-terminal kinases. [My Copy] Microbiol Mol Biol Rev, Vol. 70, No. 4. (Dec 2006), pp. 1061-1095. by Marie A. Bogoyevitch, Bostjan Kobe posted to article-predikin biological jnk mitogen-activated models protein signal specificity substrate transduction human kinase animal by neils on 2007-12-04 03:22:11 as
	Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. [My Copy] J Mol Biol, Vol. 294, No. 5. (Dec 1999), pp. 1351-1362. by N. Blom, S. Gammeltoft, S. Brunak posted to article-nar article-predikin binding computer consensus eukaryotic glycosylation models molecular motifs neural nuclear of phosphorylation phylogeny protein reproducibility results sensitivity sequence serine sites specificity structure substrate tertiary threonine trans-activators tyrosine amino-acid cell animal phosphoprotein network by neils on 2007-12-04 03:22:11 as
	Structural basis and prediction of substrate specificity in protein serine/threonine kinases. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 1. (Jan 2003), pp. 74-79. by Ross I. Brinkworth, Robert A. Breinl, Bostjan Kobe posted to article-nar article-pka-pkg specificity substrate by neils on 2007-12-04 01:53:36 as
	Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment. [My Copy] Cell Cycle, Vol. 4, No. 1. (January 2005), pp. 52-56. by G. Zhu, Y. Liu, S. Shaw posted to kinase recruitment specificity article-pka-pkg substrate by neils on 2007-12-02 08:12:24 as

neils's specificity [35 articles] Export

neils's tags

bioinformatics	196
protein	149
genomics	139
structure	130
kinase	127
prediction	111
phosphorylation	101
interaction	97
software	96
database	86
protein-protein	86
sequence	83
analysis	82
proteomics	80
bacteria	76
review	69
evolution	67
statistics	63
archaea	58
human	54
article-predikin	51
microarray	46
network	45
genome	44
metagenomics	38
data	37
sequencing	36
webserver	36
specificity	35
peptide	34
domain	33
substrate	33
mass-spec	32
genetics	31
phylogeny	30
binding	29
expression	29
virus	29
article-pka-pkg	25
function	25
regulation	25
signal	25
annotation	24
enzyme	24
amino-acid	23
pathogen	23
r-project	23
molecular	22
psychrophily	21
signaling	21
complex	20
crystallography	20
disease	20
alignment	19
gene	19
localisation	19
next-generation	19
transcriptomics	19
yeast	19
animal	18
ecology	18
transduction	18
article-nar	17
comparative	17
tertiary	17
cell	16
membrane	16
nuclear	16
nls	15
prokaryotic	15
secretion	15
transcription	15
classification	14
integration	14
modelling	14
phosphoprotein	14
plant	14
protein-serine-threonine	14
sites	14
docking	13
homology	13
interface	13
internet	13
models	13
pi3k	13
activation	12
adaptation	12
camp	12
cancer	12
computational	12
discovery	12
mapping	12
metabolism	12
methods	12
microbiology	12
prokaryote	12
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australia	11
biomarker	11
comparison	11
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enzymology	11
opinion	11
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phosphatase	10
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algorithm	9
cgmp	9
differential	9
for-thuber	9
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akap	8
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thermal	8
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biology	7
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rio	7
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user-computer	7
web	7
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activity	6
bioconductor	6
chromatography	6
editorial	6
exon	6
factors	6
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mirna	6
mitochondria	6
phosphopeptides	6
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rat	6
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serine	6
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surface	6
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perl	4
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semantic	4
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src	4
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2d-dige	3
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computational-biology	3
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serpin	2
sh3	2
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similarity	2
site-directed	2
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sorting	2
squid	2
structural	2
superfamily	2
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synthase	2
targeting	2
t-cell	2
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threonine	2
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toxin	2
transducing	2
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t-rex	2
tumor	2
twitter	2
ubiquitin-protein	2
vertebrate	2
virtual	2
workflow	2
xanthomonas	2
14-3-3	1
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as	1
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bayes	1
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envz	1
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exiguobacterium	1
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gos	1
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icat	1
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in	1
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kernel	1
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lake-vostok	1
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ligand-gated	1
limosa	1
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linear-model	1
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lsid	1
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mapk	1
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medline	1
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microbio	1
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ms	1
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nosx	1
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number	1
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ogt	1
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opsin	1
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p38	1
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porin	1
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pssm	1
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rnai	1
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rpon	1
s6	1
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scop	1
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scrubwren	1
sea-slug	1
sec	1
secis	1
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sh2	1
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silac	1
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single-cell	1
situ	1
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sm	1
smad7	1
small	1
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smooth	1
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song	1
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tiling	1
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transferase	1
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type	1
type-iii	1
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tyrannosaurus	1
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ultraviolet	1
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unicellular	1
univariate	1
uptake	1
uq	1
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utrs	1
uv	1
vaccination	1
validation	1
variome	1
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vasodilator	1
venom	1
vibrio	1
viking	1
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voltage-gated	1
weights	1
wheat	1
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wortmannin	1
wwpdb	1
xenopus	1
zebrafinch	1
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zimmer	1
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znf	1
zoarces	1
zymomonas	1