nfparrish's library 56 articles Export

	DNA replication fidelity. [My Copy] Annual review of biochemistry, Vol. 69, No. 1. (2000), pp. 497-529. by T. A. Kunkel, K. Bebenek posted to rt by nfparrish on 2009-10-19 18:06:47 as along with 3 people katholt Annab margaritis
	Human Immunodeficiency Virus Type 1 Cloning Vectors for Antiretroviral Resistance Testing [My Copy] J. Clin. Microbiol., Vol. 37, No. 9. (1 September 1999), pp. 2943-2951. by Javier Martinez-Picado, Lorraine Sutton, Maria P. De Pasquale, Anu V. Savara, Richard T. D'Aquila posted to rt by nfparrish on 2009-10-19 04:01:35 as
	Analysis of 2-LTR circle junctions of viral DNA in...[Methods Mol Biol. 2009] - PubMed Result [My Copy] posted to rt by nfparrish on 2009-10-17 21:32:27 as
	Application of 'next-generation' sequencing technologies to microbial genetics [My Copy] Nat Rev Micro, Vol. advanced online publication, No. 4. (23 February 2009), pp. 287-296. by Daniel MacLean, Jonathan D. G. Jones, David J. Studholme posted to rt by nfparrish on 2009-10-17 02:38:24 as along with 9 people and 1 group n00c kinestetika katholt jlgreen roys robsyme hpaces druvus jmeppley iSEEM
	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel posted to rt by nfparrish on 2009-10-17 02:37:13 as along with 6 people and 2 groups ghattem jonilaserson hpaces jmeppley bmaust djkt SIMR bioinformatics iSEEM
	Accuracy and quality of massively parallel DNA pyrosequencing [My Copy] Genome Biology, Vol. 8, No. 7. (20 July 2007), R143. by Susan Huse, Julie Huber, Hilary Morrison, Mitchell Sogin, David Welch posted to rt by nfparrish on 2009-10-17 02:36:51 as along with 17 people and 3 groups druvus n00c jlgreen Thaverkamp orzenil mmartin floatingpoint Huub_odc gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Olaf_Ilzins bozdagd iSEEM Bioinformatics gatech-compgenomics
	Mutational Analysis of HIV-1 Long Terminal Repeats to Explore the Relative Contribution of Reverse Transcriptase and RNA Polymerase II to Viral Mutagenesis [My Copy] Journal of Biological Chemistry, Vol. 277, No. 41. (11 October 2002), pp. 38053-38061. by Patrick K. O'Neil, Guoli Sun, Hong Yu, Yacov Ron, Joseph P. Dougherty, Bradley D. Preston posted to rt by nfparrish on 2009-10-14 16:11:01 as
	Adaptive value of high mutation rates of RNA viruses: separating causes from consequences. [My Copy] Journal of virology, Vol. 79, No. 18. (September 2005), pp. 11555-11558. by Santiago F. Elena, Rafael Sanjuán posted to rt by nfparrish on 2009-10-13 18:01:48 as
	Nucleoside-analog resistance mutations in HIV-1 reverse transcriptase and their influence on polymerase fidelity and viral mutation rates. [My Copy] The international journal of biochemistry & cell biology, Vol. 36, No. 9. (September 2004), pp. 1716-1734. by Lisa F. Rezende, Vinayaka R. Prasad posted to rt by nfparrish on 2009-10-13 17:21:55 as
	Lethal mutagenesis of HIV. [My Copy] Virus research In Virus Entry into Error Catastrophe as a New Antiviral Strategy, Vol. 107, No. 2. (February 2005), pp. 215-228. by Robert A. Smith, Lawrence A. Loeb, Bradley D. Preston posted to rt by nfparrish on 2009-10-13 17:16:26 as along with 1 person gokhan
	Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity. [My Copy] The Journal of biological chemistry, Vol. 274, No. 40. (1 October 1999), pp. 28175-28184. by M. Wisniewski, C. Palaniappan, Z. Fu, S. F. Le Grice, P. Fay, R. A. Bambara posted to rt by nfparrish on 2009-10-13 16:56:42 as
	Role of methionine 184 of human immunodeficiency virus type-1 reverse transcriptase in the polymerase function and fidelity of DNA synthesis. [My Copy] Biochemistry, Vol. 35, No. 7. (20 February 1996), pp. 2168-2179. by V. N. Pandey, N. Kaushik, N. Rege, S. G. Sarafianos, P. N. Yadav, M. J. Modak posted to rt by nfparrish on 2009-10-13 16:55:03 as
	Increased polymerase fidelity of lamivudine-resistant HIV-1 variants does not limit their evolutionary potential. [My Copy] AIDS (London, England), Vol. 13, No. 11. (30 July 1999), pp. 1343-1349. by W. Keulen, A. van Wijk, R. Schuurman, B. Berkhout, C. A. Boucher posted to rt by nfparrish on 2009-10-13 16:52:22 as
	A mutation in the primer grip region of HIV-1 reverse transcriptase that confers reduced fidelity of DNA synthesis. [My Copy] Nucleic acids research, Vol. 29, No. 24. (15 December 2001), pp. 4963-4972. by M. Gutiérrez-Rivas, L. Menéndez-Arias posted to rt by nfparrish on 2009-10-13 16:50:43 as
	HIV-1 protease catalytic efficiency effects caused by random single amino acid substitutions. [My Copy] Molecular biology and evolution, Vol. 24, No. 2. (1 February 2007), pp. 382-387. by Mariona Parera, Guerau Fernàndez, Bonaventura Clotet, Miguel Angel A. Martínez posted to rt by nfparrish on 2009-10-13 16:48:45 as along with 1 person and 1 group stevanspringer FAB-lab
	DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations [My Copy] Nucl. Acids Res., Vol. 35, No. 13. (26 July 2007), e91. by Christian Hoffmann, Nana Minkah, Jeremy Leipzig, et al.Gary Wang, Max Q. Arens, Pablo Tebas, Frederic D. Bushman posted to rt by nfparrish on 2009-09-16 18:16:01 as along with 2 people and 1 group jlgreen niallhaslam iSEEM
	Theory of Lethal Mutagenesis for Viruses [My Copy] J. Virol., Vol. 81, No. 6. (15 March 2007), pp. 2930-2939. by J. J. Bull, R. Sanjuan, C. O. Wilke posted to rt by nfparrish on 2009-09-16 17:54:26 as along with 1 person operon
	Virus evolution: the importance of being erroneous. [My Copy] Nature, Vol. 420, No. 6914. (28 November 2002) by Sebastian Bonhoeffer, Paul Sniegowski posted to rt by nfparrish on 2009-09-16 17:48:09 as
	Turning up the volume on mutational pressure: is more of a good thing always better? (A case study of HIV-1 Vif and APOBEC3). [My Copy] Retrovirology, Vol. 5 (13 March 2008), 26. by Satish K. Pillai, Joseph K. Wong, Jason D. Barbour posted to rt by nfparrish on 2009-09-15 21:46:35 as
	5-Azacytidine Can Induce Human Immunodeficiency Virus Type 1 Lethal Mutagenesis. [My Copy] Journal of virology (2 September 2009) by Michael J. Dapp, Christine L. Clouser, Steven Patterson, Louis M. Mansky posted to rt by nfparrish on 2009-09-15 21:38:33 as
	Antigenic diversity thresholds and the development of AIDS. [My Copy] Science (New York, N.Y.), Vol. 254, No. 5034. (15 November 1991), pp. 963-969. by M. A. Nowak, R. M. Anderson, A. R. McLean, T. F. Wolfs, J. Goudsmit, R. M. May posted to rt by nfparrish on 2009-09-15 08:08:00 as along with 1 person skumagai
	The evolutionary dynamics of HIV-1 quasispecies and the development of immunodeficiency disease. [My Copy] AIDS (London, England), Vol. 4, No. 11. (November 1990), pp. 1095-1103. by M. A. Nowak, R. M. May, R. M. Anderson posted to no-tag by nfparrish on 2009-09-15 08:07:01 as
	Viral quasispecies. [My Copy] Scientific American, Vol. 269, No. 1. (July 1993), pp. 42-49. by M. Eigen posted to rt by nfparrish on 2009-09-15 08:03:39 as along with 1 person jmeppley
	Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. [My Copy] Journal of virology, Vol. 69, No. 8. (1 August 1995), pp. 5087-5094. by L. M. Mansky, H. M. Temin posted to rt by nfparrish on 2009-09-15 08:00:33 as along with 2 people richieboy gokhan
	The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. [My Copy] The Journal of experimental medicine, Vol. 206, No. 6. (8 June 2009), pp. 1253-1272. by Nilu Goonetilleke, Michael K. Liu, Jesus F. Salazar-Gonzalez, et al.Guido Ferrari, Elena Giorgi, Vitaly V. Ganusov, Brandon F. Keele, Gerald H. Learn, Emma L. Turnbull, Maria G. Salazar, Kent J. Weinhold, Stephen Moore, CHAVI Clinical Core B, Norman Letvin, Barton F. Haynes, Myron S. Cohen, Peter Hraber, Tanmoy Bhattacharya, Persephone Borrow, Alan S. Perelson, Beatrice H. Hahn, George M. Shaw, Bette T. Korber, Andrew J. McMichael posted to rt by nfparrish on 2009-09-15 07:56:45 as along with 4 people rpsimmonsin peterbgilbert kieran101 nparrish
	Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz. [My Copy] Nature, Vol. 460, No. 7254. (23 July 2009), pp. 515-519. by Brandon F. Keele, James Holland H. Jones, Karen A. Terio, et al.Jacob D. Estes, Rebecca S. Rudicell, Michael L. Wilson, Yingying Li, Gerald H. Learn, T. Mark Beasley, Joann Schumacher-Stankey, Emily Wroblewski, Anna Mosser, Jane Raphael, Shadrack Kamenya, Elizabeth V. Lonsdorf, Dominic A. Travis, Titus Mlengeya, Michael J. Kinsel, James G. Else, Guido Silvestri, Jane Goodall, Paul M. Sharp, George M. Shaw, Anne E. Pusey, Beatrice H. Hahn posted to rt by nfparrish on 2009-09-15 07:53:20 as along with 1 person linusben
	Classic AIDS in a sooty mangabey after an 18-year natural infection. [My Copy] Journal of virology, Vol. 78, No. 16. (August 2004), pp. 8902-8908. by Binhua Ling, Cristian Apetrei, Ivona Pandrea, et al.Ronald S. Veazey, Andrew A. Lackner, Bobby Gormus, Preston A. Marx posted to rt by nfparrish on 2009-09-15 07:24:46 as
	Mechanistic role of residue Gln151 in error prone DNA synthesis by human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT). Pre-steady state kinetic study of the Q151N HIV-1 RT mutant with increased fidelity. [My Copy] The Journal of biological chemistry, Vol. 277, No. 25. (21 June 2002), pp. 22662-22669. by Kellie K. Weiss, Robert A. Bambara, Baek Kim posted to rt by nfparrish on 2009-09-15 06:13:00 as
	The M184V mutation in reverse transcriptase can delay reversion of attenuated variants of simian immunodeficiency virus. [My Copy] Journal of virology, Vol. 76, No. 17. (September 2002), pp. 8958-8962. by James B. Whitney, Maureen Oliveira, Mervi Detorio, Yongjun Guan, Mark A. Wainberg posted to rt by nfparrish on 2009-09-15 06:10:19 as
	Structure of unliganded HIV-1 reverse transcriptase at 2.7 A resolution: implications of conformational changes for polymerization and inhibition mechanisms. [My Copy] Structure (London, England : 1993), Vol. 4, No. 7. (15 July 1996), pp. 853-860. by Y. Hsiou, J. Ding, K. Das, A. D. Clark, S. H. Hughes, E. Arnold posted to rt by nfparrish on 2009-09-15 06:03:04 as
	Structure of HIV-2 reverse transcriptase at 2.35-A resolution and the mechanism of resistance to non-nucleoside inhibitors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14410-14415. by J. Ren, L. E. Bird, P. P. Chamberlain, G. B. Stewart-Jones, D. I. Stuart, D. K. Stammers posted to rt by nfparrish on 2009-09-15 06:01:25 as
	Mechanistic insights into the role of Val75 of HIV-1 reverse transcriptase in misinsertion and mispair extension fidelity of DNA synthesis. [My Copy] Journal of molecular biology, Vol. 375, No. 5. (1 February 2008), pp. 1234-1248. by Tania Matamoros, Baek Kim, Luis Menéndez-Arias posted to rt by nfparrish on 2009-09-15 06:00:05 as
	Molecular epidemiology of simian immunodeficiency virus SIVsm in U.S. primate centers unravels the origin of SIVmac and SIVstm. [My Copy] Journal of virology, Vol. 79, No. 14. (July 2005), pp. 8991-9005. by Cristian Apetrei, Amitinder Kaur, Nicholas W. Lerche, et al.Michael Metzger, Ivona Pandrea, Johnny Hardcastle, Shelley Falkenstein, Rudolf Bohm, Jeffrey Koehler, Vicki Traina-Dorge, Tessa Williams, Silvija Staprans, Gail Plauche, Ronald S. Veazey, Harold McClure, Andrew A. Lackner, Bobby Gormus, David L. Robertson, Preston A. Marx posted to rt by nfparrish on 2009-09-15 05:38:32 as
	Detection of minor drug-resistant populations by parallel allele-specific sequencing. [My Copy] Nature methods, Vol. 4, No. 2. (07 February 2007), pp. 123-125. by Fangping Cai, Haifeng Chen, Charles B. Hicks, John A. Bartlett, Jun Zhu, Feng Gao posted to rt by nfparrish on 2009-09-15 05:25:27 as
	Unintegrated lentivirus DNA persistence and accessibility to expression in nondividing cells: analysis with class I integrase mutants. [My Copy] Journal of virology, Vol. 78, No. 6. (March 2004), pp. 2906-2920. by Dyana T. Saenz, Nils Loewen, Mary Peretz, et al.Todd Whitwam, Román Barraza, Kyle G. Howell, Jonathan M. Holmes, Margaret Good, Eric M. Poeschla posted to rt by nfparrish on 2009-09-15 05:11:27 as
	Complementation of integrase function in HIV-1 virions. [My Copy] The EMBO journal, Vol. 16, No. 16. (15 August 1997), pp. 5123-5138. by T. M. Fletcher, M. A. Soares, S. McPhearson, et al.H. Hui, M. Wiskerchen, M. A. Muesing, G. M. Shaw, A. D. Leavitt, J. D. Boeke, B. H. Hahn posted to rt by nfparrish on 2009-09-15 05:09:27 as
	Lentiviral vectors with a defective integrase allow efficient and sustained transgene expression in vitro and in vivo. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 47. (21 November 2006), pp. 17684-17689. by Stéphanie Philippe, Chamsy Sarkis, Martine Barkats, et al.Hamid Mammeri, Charline Ladroue, Caroline Petit, Jacques Mallet, Che Serguera posted to rt by nfparrish on 2009-09-15 04:40:25 as
	Replicative fidelity of lentiviral vectors produced by transient transfection. [My Copy] Virology, Vol. 348, No. 2. (10 May 2006), pp. 406-417. by Meg M. Laakso, Richard E. Sutton posted to rt by nfparrish on 2009-09-14 22:22:36 as
	HIV-2: the forgotten AIDS virus. [My Copy] Trends in microbiology, Vol. 16, No. 12. (December 2008), pp. 588-595. by Thushan I. de Silva, Matthew Cotten, Sarah L. Rowland-Jones posted to rt by nfparrish on 2009-09-14 07:43:48 as along with 1 person KevinVanCalster
	Modeling within-host HIV-1 dynamics and the evolution of drug resistance: trade-offs between viral enzyme function and drug susceptibility. [My Copy] Journal of theoretical biology, Vol. 247, No. 4. (21 August 2007), pp. 804-818. by Libin Rong, Michael A. Gilchrist, Zhilan Feng, Alan S. Perelson posted to rt by nfparrish on 2009-09-14 05:41:45 as along with 1 person gokhan
	Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression. [My Copy] PLoS computational biology, Vol. 4, No. 12. (12 December 2008), e1000240. by Ha Youn Y. Lee, Alan S. Perelson, Su-Chan C. Park, Thomas Leitner posted to rt by nfparrish on 2009-09-14 05:39:12 as along with 2 people coombs djkt
	Modeling sequence evolution in acute HIV-1 infection [My Copy] Journal of Theoretical Biology, Vol. 261, No. 2. (21 November 2009), pp. 341-360. by Ha Y. Lee, Elena E. Giorgi, Brandon F. Keele, et al.Brian Gaschen, Gayathri S. Athreya, Jesus F. Salazar-Gonzalez, Kimmy T. Pham, Paul A. Goepfert, J. Michael Kilby, Michael S. Saag posted to rt by nfparrish on 2009-09-14 05:31:32 as along with 3 people venuiitg carlosjavierna kieran101
	Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 21. (27 May 2008), pp. 7552-7557. by Brandon F. Keele, Elena E. Giorgi, Jesus F. Salazar-Gonzalez, et al.Julie M. Decker, Kimmy T. Pham, Maria G. Salazar, Chuanxi Sun, Truman Grayson, Shuyi Wang, Hui Li, Xiping Wei, Chunlai Jiang, Jennifer L. Kirchherr, Feng Gao, Jeffery A. Anderson, Li-Hua H. Ping, Ronald Swanstrom, Georgia D. Tomaras, William A. Blattner, Paul A. Goepfert, J. Michael Kilby, Michael S. Saag, Eric L. Delwart, Michael P. Busch, Myron S. Cohen, David C. Montefiori, Barton F. Haynes, Brian Gaschen, Gayathri S. Athreya, Ha Y. Lee, Natasha Wood, Cathal Seoighe, Alan S. Perelson, Tanmoy Bhattacharya, Bette T. Korber, Beatrice H. Hahn, George M. Shaw posted to rt by nfparrish on 2009-09-14 05:30:17 as
	Unselected mutations in the human immunodeficiency virus type 1 genome are mostly nonsynonymous and often deleterious. [My Copy] Journal of virology, Vol. 78, No. 5. (March 2004), pp. 2426-2433. by Feng Gao, Yalu Chen, David N. Levy, Joan A. Conway, Thomas B. Kepler, Huxiong Hui posted to rt by nfparrish on 2009-09-14 05:13:42 as
	Forward mutation rate of human immunodeficiency virus type 1 in a T lymphoid cell line. [My Copy] AIDS research and human retroviruses, Vol. 12, No. 4. (1 March 1996), pp. 307-314. by L. M. Mansky posted to rt by nfparrish on 2009-09-14 05:10:25 as
	HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. [My Copy] Science (New York, N.Y.), Vol. 267, No. 5197. (27 January 1995), pp. 483-489. by J. M. Coffin posted to rt by nfparrish on 2009-09-14 00:02:18 as
	Genetic diversity and evolution of retroviruses. [My Copy] Current topics in microbiology and immunology, Vol. 176 (1992), pp. 143-164. by J. M. Coffin posted to rt by nfparrish on 2009-09-14 00:01:39 as
	Linkage disequilibrium test implies a large effective population number for HIV in vivo. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 19. (14 September 1999), pp. 10758-10763. by I. M. Rouzine, J. M. Coffin posted to rt by nfparrish on 2009-09-14 00:00:16 as
	Selection of genetic variants of simian immunodeficiency virus in persistently infected rhesus monkeys. [My Copy] Journal of virology, Vol. 65, No. 4. (April 1991), pp. 1843-1854. by D. P. Burns, R. C. Desrosiers posted to rt by nfparrish on 2009-09-13 23:56:55 as
	Simian immunodeficiency viruses from African green monkeys display unusual genetic diversity. [My Copy] Journal of virology, Vol. 64, No. 3. (March 1990), pp. 1086-1092. by P. R. Johnson, A. Fomsgaard, J. Allan, et al.M. Gravell, W. T. London, R. A. Olmsted, V. M. Hirsch posted to rt by nfparrish on 2009-09-13 23:55:42 as

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