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niallhaslam's library [152 articles]

Recent papers added to niallhaslam's library.
  • What a polyclonal antibody sees in von Willebrand factor.
    Thrombosis research, Vol. 121, No. 4. (2008), pp. 519-526.
    by FL Tan, D Ginsburg
    posted to antibody antibodies by niallhaslam on 2008-05-07 10:49:48 as **
  • Winners don/'t punish
    Nature, Vol. 452, No. 7185. (20 March 2008), pp. 348-351.
    by Anna Dreber, David G Rand, Drew Fudenberg, Martin A Nowak
    posted to evolution cooperation by niallhaslam on 2008-05-02 12:03:51 as ** along with 10 people and 1 group hardin Retchless dullhunk gennaro Koh cam_webb shivakmr eegilbert yuhc cwmccabe VisionLab
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to protein-protein protein-network protein-interaction by niallhaslam on 2008-04-29 08:55:36 as ** along with 7 people kluck jyuh tmmurali neils Dualsystems grahamc zwang
  • A new protein linear motif benchmark for multiple sequence alignment software
    BMC Bioinformatics, Vol. 9 (25 April 2008), 213.
    by Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J Gibson, Julie D Thompson
    posted to linear-motif by niallhaslam on 2008-04-28 11:46:08 as read along with 2 people biehl chad_davis
  • Direct Visualization of Horizontal Gene Transfer
    Science, Vol. 319, No. 5869. (14 March 2008), pp. 1533-1536.
    by Ana Babic, Ariel B Lindner, Marin Vulic, Eric J Stewart, Miroslav Radman
    posted to evolution horizontal-gene-transfer by niallhaslam on 2008-04-22 10:23:58 as ** along with 3 people madhadron zwang melting
  • Antibody microarray-based oncoproteomics
    Expert Opinion on Biological Therapy, Vol. 6, No. 8. (August 2006), pp. 833-838.
    by Borrebaeck, Carl Ak
    posted to affinity protein-array protein-interaction protein-protein proteomics by niallhaslam on 2008-04-22 09:45:43 as *****
  • Affinity reagent resources for human proteome detection: Initiatives and perspectives
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by Oda Stoevesandt, Michael J Taussig
    posted to affinity immunoinformatics protein proteomics by niallhaslam on 2008-04-22 09:45:07 as ***** along with 1 person jyuh
  • In vivo selection of intrabodies specifically targeting protein-protein interactions: A general platform for an "undruggable" class of disease targets.
    Journal of biotechnology (4 March 2008)
    by Michela Visintin, Teresa Melchionna, Isabella Cannistraci, Antonino Cattaneo
    posted to antibodies antibody protein-interaction protein-protein by niallhaslam on 2008-04-11 08:54:59 as **
  • Discovery of candidate KEN box motifs using Cell Cycle keyword enrichment combined with native disorder prediction and motif conservation.
    Bioinformatics (9 January 2008)
    by Sushama Michael, Gilles Travé, Chenna Ramu, Claudia Chica, Toby J J Gibson
    posted to conservation motif ontology ontology-search by niallhaslam on 2008-04-08 09:32:46 as read along with 1 person kluck
  • The effect of sequence quality on sequence alignment
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 897-900.
    by Ketil Malde
    posted to assembly sequence-alignment by niallhaslam on 2008-04-08 09:31:53 as ** along with 1 person mailund
  • A partially structured region of a largely unstructured protein, Plasmodium falciparum merozoite surface protein 2 (MSP2), forms amyloid-like fibrils.
    Journal of peptide science : an official publication of the European Peptide Society, Vol. 13, No. 12. (December 2007), pp. 839-848.
    by X Yang, CG Adda, DW Keizer, VJ Murphy, MM Rizkalla, MA Perugini, DC Jackson, RF Anders, RS Norton
    posted to disorder domains modular-architecture partially-structured structure-prediction by niallhaslam on 2008-04-02 11:23:35 as **
  • Recent advances in immunoinformatics: Application of in silico tools to drug development.
    Curr Opin Drug Discov Devel, Vol. 11, No. 2. (March 2008), pp. 233-241.
    by MC Evans
    posted to immunoinformatics by niallhaslam on 2008-04-01 10:38:04 as ** along with 3 people xtizon Yukihiro santiago
  • Genotypic resistance testing in HIV by arrayed primer extension.
    Anal Bioanal Chem (18 January 2008)
    by Michaela Schanné, Jochen Bodem, Aslihan Gerhold-Ay, Anette Jacob, Kurt Fellenberg, Hans-Georg G Kräusslich, Jörg D Hoheisel
    posted to genotyping microarray primer-design probe-design probe-selection resequencing by niallhaslam on 2008-04-01 10:33:24 as *****
  • The time duration for DNA thermal denaturation
    Journal of Physics: Condensed Matter, Vol. 20, No. 3. (2008), 035101.
    by Gabriel F Calvo, Ramon F Alvarez-Estrada
    posted to dna thermal-equivalence thermodynamics by niallhaslam on 2008-03-03 11:02:19 as ***
  • The Protein Identifier Cross-Reference (PICR) service: reconciling protein identifiers across multiple source databases
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Richard Cote, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob
    posted to cross-reference database ensembl protein swissprot uniprot webservices by niallhaslam on 2008-02-21 15:24:30 as ***** along with 5 people jyuh dullhunk antonkratz gmonce barriot
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to alignment resequencing sequence sequence-alignment by niallhaslam on 2008-02-14 10:46:54 as **** along with 6 people urgi caseybrown jyuh ghattem GustavoLacerda mdimon
  • The economics of altruistic punishment and the maintenance of cooperation
    Proceedings of the Royal Society B: Biological Sciences
    by Martijn Egas, Arno Riedl
    posted to complexity complex-systems cooperation by niallhaslam on 2008-02-14 10:46:05 as ** along with 1 person adriandefroment
  • A semi-rational design strategy of directed evolution combined with chemical synthesis of DNA sequences.
    Biol Chem, Vol. 388, No. 12. (December 2007), pp. 1291-1300.
    by AS Xiong, RH Peng, J Zhuang, JG Liu, F Gao, F Xu, B Cai, QH Yao
    posted to design microarray oligonucleotide resequencing resistance sequencing by niallhaslam on 2008-02-14 10:45:34 as **
  • Role of intrinsic flexibility in signal transduction mediated by the cell cycle regulator, p27 Kip1.
    J Mol Biol, Vol. 376, No. 3. (22 February 2008), pp. 827-838.
    by CA Galea, A Nourse, Y Wang, SG Sivakolundu, WT Heller, RW Kriwacki
    posted to disorder by niallhaslam on 2008-02-14 10:44:41 as **
  • Identification of the HIV-1 gp41 core-binding motif - HXXNPF
    FEBS Letters, Vol. 580, No. 20. (4 September 2006), pp. 4807-4814.
    by Jing-He Huang, Zu-Qiang Liu, Shuwen Liu, Shibo Jiang, Ying-Hua Chen
    posted to antibodies antibody interactions motif protein-interaction protein-protein by niallhaslam on 2008-02-13 15:02:26 as ***
  • The impact of next-generation sequencing technology on genetics
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Elaine R Mardis
    posted to assembly resequencing sequencing by niallhaslam on 2008-02-13 12:35:36 as ***** along with 5 people jyuh dchughes djkt urgi zerojinx
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to assembly sequencing by niallhaslam on 2008-02-13 12:34:02 as ***** along with 8 people mariakmejia jfr Neeperando jmeppley dchughes djkt GustavoLacerda urgi
  • The logic of indirect speech
    Proceedings of the National Academy of Sciences (16 January 2008), 0707192105.
    by Steven Pinker, Martin A Nowak, James J Lee
    posted to cooperation evolution language by niallhaslam on 2008-01-25 14:49:50 as read along with 2 people briordan cjeans
  • Visualizing spatially correlated dynamics that directs RNA conformational transitions
    Nature, Vol. 450, No. 7173., pp. 1263-1267.
    by Qi Zhang, Andrew C Stelzer, Charles K Fisher, Hashim M Al-Hashimi
    posted to ski-club by niallhaslam on 2008-01-02 15:20:05 as ** along with 5 people and 3 groups cactus sobolevnrm joseph_x_zhou kintoki kluck baker-group HIV_DR Soft Matter
  • Invested, extracted and byproduct benefits: A modified scheme for the evolution of cooperation
    Behavioural Processes, Vol. 76, No. 2. (October 2007), pp. 109-113.
    by Richard Connor
    posted to cooperation embl_mol_evol_club evolution poss-journal-club by niallhaslam on 2007-12-17 13:47:50 as **
  • Wasp Gene Expression Supports an Evolutionary Link Between Maternal Behavior and Eusociality
    Science (27 September 2007), 1146647.
    by Amy L Toth, Kranthi Varala, Thomas C Newman, Fernando E Miguez, Stephen K Hutchison, David A Willoughby, Jan F Simons, Michael Egholm, James H Hunt, Matthew E Hudson, Gene E Robinson
    posted to cooperation embl_mol_evol_club evolution poss-journal-club by niallhaslam on 2007-12-17 11:22:23 as ** along with 3 people stajich zwang ale
  • Evolution of cooperation without reciprocity
    Nature, Vol. 414, No. 6862. (22 November 2001), pp. 441-443.
    by Rick L Riolo, Michael D Cohen, Robert Axelrod
    posted to complexity cooperation evolution by niallhaslam on 2007-12-17 10:57:03 as **** along with 7 people and 1 group mits ElFishski voiklis dpeeler marcusfrean JanHGKlabbers sharmiamala ColDyn
  • Via Freedom to Coercion: The Emergence of Costly Punishment
    Science, Vol. 316, No. 5833. (29 June 2007), pp. 1905-1907.
    by Christoph Hauert, Arne Traulsen, Hannelore Brandt, Martin A Nowak, Karl Sigmund
    posted to cooperation embl_mol_evol_club evolution poss-journal-club by niallhaslam on 2007-12-17 10:12:19 as ** along with 3 people and 1 group brant nelmor jagarciag EisenLab
  • Chimps don't just get mad, they get even
    Proceedings of the National Academy of Sciences, Vol. 104, No. 34. (21 August 2007), pp. 13537-13538.
    by Joan B Silk
    posted to behaviour cooperation evolution poss-journal-club by niallhaslam on 2007-12-17 10:12:00 as **
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to domains modular-architecture network protein protein-network protein-protein by niallhaslam on 2007-12-13 12:36:45 as **** along with 8 people bicko chad_davis choonpeng grahamc cjeans zwang biehl marti
  • Defects of the insulin receptor substrate (IRS) system in human metabolic disorders
    FASEB J., Vol. 15, No. 12. (1 October 2001), pp. 2099-2111.
    by Giorgio Sesti, Massimo Federici, Marta L Hribal, Davide Lauro, Paolo Sbraccia, Renato Lauro
    posted to insulin-receptor-substrate irs by niallhaslam on 2007-12-12 15:28:51 as **
  • Electrochemical synthesis of metal and semimetal nanotube-nanowire heterojunctions and their electronic transport properties.
    Chem Commun (Camb), No. 17. (7 May 2007), pp. 1733-1735.
    by D Yang, G Meng, S Zhang, Y Hao, X An, Q Wei, M Ye, L Zhang
    posted to ski-club by niallhaslam on 2007-12-05 11:33:23 as ** along with 1 person kluck
  • The role of peptide motifs in the evolution of a protein network.
    Nucleic Acids Res (18 September 2007)
    by Hirohide Saito, Shunnichi Kashida, Tan Inoue, Kiyotaka Shiba
    posted to complexity complex-systems evolution motif network peptide protein-network protein-protein ski-club by niallhaslam on 2007-12-03 18:30:59 as ** along with 3 people balicea cabbagezs kluck
  • A human protein atlas based on antibody proteomics.
    Curr Opin Mol Ther, Vol. 8, No. 3. (June 2006), pp. 185-190.
    by A Persson, S Hober, M Uhlén
    posted to antibody antibody-array proteomics by niallhaslam on 2007-12-03 10:47:04 as ****
  • Antibody-based Proteomics for Human Tissue Profiling
    Mol Cell Proteomics, Vol. 4, No. 4. (1 April 2005), pp. 384-393.
    by Mathias Uhlen, Fredrik Ponten
    posted to antibody antibody-array proteomics by niallhaslam on 2007-12-03 10:46:36 as read
  • Modeling the adaptive immune system: predictions and simulations.
    Bioinformatics (28 November 2007)
    by Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen
    posted to antibody by niallhaslam on 2007-12-03 10:18:19 as ** along with 2 people Ema sameetmehta
  • Microarray-based DNA resequencing using 3' blocked primers.
    Anal Biochem (4 November 2007)
    by Jakub Sram, Steve S S Sommer, Qiang Liu
    posted to design microarray oligonucleotide resequencing by niallhaslam on 2007-12-03 10:17:56 as ****
  • A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip(R) whole-genome resequencing platform.
    Nucleic Acids Res (15 November 2007)
    by Gagan A A Pandya, Michael H H Holmes, Sirisha Sunkara, Andrew Sparks, Yun Bai, Kathleen Verratti, Kelly Saeed, Pratap Venepally, Behnam Jarrahi, Robert D D Fleischmann, Scott N N Peterson
    posted to base-calling design microarray resequencing by niallhaslam on 2007-12-03 10:17:30 as *** along with 1 person giovanni
  • Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design
    BMC Genomics, Vol. 8 (16 November 2007), 423.
    by John S Ramsey, Alex CC Wilson, Martin de Vos, Qi Sun, Cecilia Tamborindeguy, Agnese Winfield, Gaynor Malloch, Dawn M Smith, Brian Fenton, Stewart M Gray, Georg Jander
    posted to affymetrix design microarray by niallhaslam on 2007-11-29 10:34:32 as **
  • Spatially addressable protein array: ssDNA-directed assembly for antibody microarray.
    Electrophoresis (15 November 2007)
    by Jin Kiat K Ng, Parayil Kumaran K Ajikumar, Yew Chung C Tang, Jim Yang Y Lee, Gregory Stephanopoulos, Heng-Phon P Too
    posted to antibodies antibody-array protein-array by niallhaslam on 2007-11-29 10:34:12 as ****
  • Probe selection for DNA microarrays using OligoWiz.
    Nat Protoc, Vol. 2, No. 11. (2007), pp. 2677-2691.
    by R Wernersson, AS Juncker, HB Nielsen
    posted to microarray oligonucleotide probe-design probe-selection signal-intensity by niallhaslam on 2007-11-29 10:33:36 as ***
  • Extending microarray quality control and analysis algorithms to illumina chip platform.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 4637-4640.
    by TH Stokes, X Han, RA Moffitt, MD Wang
    posted to affymetrix hybridisation illumina microarray oligonucleotide primer-design signal-intensity temperature thermodynamics by niallhaslam on 2007-11-29 10:31:45 as *** along with 1 person flexer
  • Thermodynamic Behavior of Short Oligonucleotides in Microarray Hybridizations Can Be Described Using Gibbs Free Energy in a Nearest-Neighbor Model.
    J Phys Chem B (10 November 2007)
    by Stefan Weckx, Enrico Carlon, Luc D Vuyst, Paul V Hummelen
    posted to affymetrix design melting oligonucleotide sequencing short-read signal-intensity temperature thermodynamics by niallhaslam on 2007-11-29 10:28:54 as ***
  • The evolution of strong reciprocity: cooperation in heterogeneous populations.
    Theor Popul Biol, Vol. 65, No. 1. (February 2004), pp. 17-28.
    by S Bowles, H Gintis
    posted to cooperation evolution by niallhaslam on 2007-11-26 13:27:20 as ** along with 4 people adriandefroment leo_20 nickstenning amorgan77
  • The evolution of cooperation
    Quarterly Review of Biology, Vol. 79, No. 2. (June 2004), pp. 135-160.
    by Joel L Sachs, Ulrich G Mueller, Thomas P Wilcox, James J Bull
    posted to cooperation evolution by niallhaslam on 2007-11-26 13:26:42 as **** along with 2 people mauricelee carolaccs
  • Perspective: repression of competition and the evolution of cooperation.
    Evolution Int J Org Evolution, Vol. 57, No. 4. (April 2003), pp. 693-705.
    by SA Frank
    posted to complexity conservation cooperation evolution by niallhaslam on 2007-11-26 13:26:03 as *** along with 1 person and 1 group brettc evo-devo
  • Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature.
    Proteins (14 November 2007)
    by Niti Kumar, Swati Shukla, Sanjiv Kumar, Anju Suryawanshi, Uma Chaudhry, Srinivasan Ramachandran, Souvik Maiti
    posted to disorder structure-prediction by niallhaslam on 2007-11-26 09:52:29 as **
  • Finding the Needles in the Metagenome Haystack
    pp. 475-485.
    by George Kowalchuk
    posted to assembly metagenomics by niallhaslam on 2007-11-22 11:32:13 as read
  • Computability of Models for Sequence Assembly
    Algorithms in Bioinformatics (2007), pp. 289-301.
    by Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno
    posted to reassembly resequencing by niallhaslam on 2007-11-22 09:57:01 as read
  • Self-Organization in High-Density Bacterial Colonies: Efficient Crowd Control
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e302.
    by Hojung Cho, Henrik Jönsson, Kyle Campbell, Pontus Melke, Joshua W Williams, Bruno Jedynak, Ann M Stevens, Alex Groisman, Andre Levchenko
    posted to complexity evolution self-organisation by niallhaslam on 2007-11-20 11:24:18 as ** along with 1 person and 1 group hardingp Evacuation modelling
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