Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Export

@article{citeulike:2214211, abstract = {MOTIVATION: In the present work we combine computational analysis and experimental data to explore the extent to which binding site similarities between members of the human cytosolic sulfotransferase family correlate with small-molecule binding profiles. Conversely, from a small-molecule point of view, we explore the extent to which structural similarities between small molecules correlate to protein binding profiles. RESULTS: The comparison of binding site structural similarities and small-molecule binding profiles shows that proteins with similar small-molecule binding profiles tend to have a higher degree of binding site similarity but the latter is not sufficient to predict small-molecule binding patterns, highlighting the difficulty of predicting small-molecule binding patterns from sequence or structure. Likewise, from a small-molecule perspective, small molecules with similar protein binding profiles tend to be topologically similar but topological similarity is not sufficient to predict their protein binding patterns. These observations have important consequences for function prediction and drug design.}, address = {European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Cambridge CB10 1SD, UK. rafael.najmanovich@ebi.ac.uk}, author = {Najmanovich, R. J. and Allali-Hassani, A. and Morris, R. J. and Dombrovsky, L. and Pan, P. W. and Vedadi, M. and Plotnikov, A. N. and Edwards, A. and Arrowsmith, C. and Thornton, J. M.}, citeulike-article-id = {2214211}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/17237076}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=17237076}, day = {15}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {binding, bsc, cmoparison, protein, review, similarity, site, structure}, month = {January}, number = {2}, posted-at = {2008-07-08 14:47:52}, priority = {4}, title = {Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17237076}, volume = {23}, year = {2007} }

TY - JOUR ID - citeulike:2214211 L3 - citeulike-article-id:2214211 N2 - MOTIVATION: In the present work we combine computational analysis and experimental data to explore the extent to which binding site similarities between members of the human cytosolic sulfotransferase family correlate with small-molecule binding profiles. Conversely, from a small-molecule point of view, we explore the extent to which structural similarities between small molecules correlate to protein binding profiles. RESULTS: The comparison of binding site structural similarities and small-molecule binding profiles shows that proteins with similar small-molecule binding profiles tend to have a higher degree of binding site similarity but the latter is not sufficient to predict small-molecule binding patterns, highlighting the difficulty of predicting small-molecule binding patterns from sequence or structure. Likewise, from a small-molecule perspective, small molecules with similar protein binding profiles tend to be topologically similar but topological similarity is not sufficient to predict their protein binding patterns. These observations have important consequences for function prediction and drug design. IS - 2 JF - Bioinformatics SN - 1460-2059 AD - European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Cambridge CB10 1SD, UK. rafael.najmanovich@ebi.ac.uk TI - Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. VL - 23 KW - binding KW - bsc KW - cmoparison KW - protein KW - review KW - similarity KW - site KW - structure AU - Najmanovich, RJ AU - Allali-Hassani, A AU - Morris, RJ AU - Dombrovsky, L AU - Pan, PW AU - Vedadi, M AU - Plotnikov, AN AU - Edwards, A AU - Arrowsmith, C AU - Thornton, JM PY - 2007/01/15/ UR - http://view.ncbi.nlm.nih.gov/pubmed/17237076 ER -