Geometry-based flexible and symmetric protein docking. Export

@article{Schneidman-Duhovny2005, abstract = {We present a set of geometric docking algorithms for rigid, flexible, and cyclic symmetry docking. The algorithms are highly efficient and have demonstrated very good performance in CAPRI Rounds 3-5. The flexible docking algorithm, FlexDock, is unique in its ability to handle any number of hinges in the flexible molecule, without degradation in run-time performance, as compared to rigid docking. The algorithm for reconstruction of cyclically symmetric complexes successfully assembles multimolecular complexes satisfying C(n) symmetry for any n in a matter of minutes on a desktop PC. Most of the algorithms presented here are available at the Tel Aviv University Structural Bioinformatics Web server (http://bioinfo3d.cs.tau.ac.il/).}, author = {Duhovny, Dina S. and Inbar, Yuval and Nussinov, Ruth and Wolfson, Haim J.}, citeulike-article-id = {422253}, citeulike-linkout-0 = {http://dx.doi.org/10.1002/prot.20562}, doi = {10.1002/prot.20562}, journal = {Proteins}, keywords = {bibtex-import, docking, flexibility, geometry-based}, month = {Aug}, number = {2}, pages = {224--231}, posted-at = {2005-12-05 16:21:23}, priority = {0}, title = {Geometry-based flexible and symmetric protein docking.}, url = {10.1002/prot.20562}, volume = {60}, year = {2005} }

TY - JOUR ID - Schneidman-Duhovny2005 L3 - citeulike-article-id:422253 N2 - We present a set of geometric docking algorithms for rigid, flexible, and cyclic symmetry docking. The algorithms are highly efficient and have demonstrated very good performance in CAPRI Rounds 3-5. The flexible docking algorithm, FlexDock, is unique in its ability to handle any number of hinges in the flexible molecule, without degradation in run-time performance, as compared to rigid docking. The algorithm for reconstruction of cyclically symmetric complexes successfully assembles multimolecular complexes satisfying C(n) symmetry for any n in a matter of minutes on a desktop PC. Most of the algorithms presented here are available at the Tel Aviv University Structural Bioinformatics Web server (http://bioinfo3d.cs.tau.ac.il/). IS - 2 JF - Proteins EP - 231 TI - Geometry-based flexible and symmetric protein docking. VL - 60 SP - 224 KW - bibtex-import KW - docking KW - flexibility KW - geometry-based AU - Duhovny, Dina AU - Inbar, Yuval AU - Nussinov, Ruth AU - Wolfson, Haim PY - 2005/Aug// UR - http://dx.doi.org/10.1002/prot.20562 ER -