nickolay's binding-site-analysis [9 articles] Export

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	Use of Amino Acid Composition to Predict Ligand-Binding Sites [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 2. (1 March 2007), pp. 400-406. by Shinji Soga, Hiroki Shirai, Masato Kobori, Noriaki Hirayama posted to amino-acids binding-site-analysis p1 protein protein-ligand structure surface by nickolay on 2009-08-06 19:01:15 as along with 1 person iaolier
	Chemocavity: Specific Concavity in Protein Reserved for the Binding of Biologically Functional Small Molecules [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 8. (1 August 2008), pp. 1679-1685. by Shinji Soga, Hiroki Shirai, Masato Kobori, Noriaki Hirayama posted to binding-site-analysis concavity p1 protein structure surface by nickolay on 2009-08-06 16:18:31 as
	Identification of the Druggable Concavity in Homology Models Using the PLB Index [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 6. (1 November 2007), pp. 2287-2292. by Shinji Soga, Hiroki Shirai, Masato Kobori, Noriaki Hirayama posted to binding-site-analysis concavity identification p1 protein surface by nickolay on 2009-08-06 16:15:47 as
	Residue frequencies and pairing preferences at protein-protein interfaces [My Copy] Proteins: Structure, Function, and Genetics, Vol. 43, No. 2. (2001), pp. 89-102. by Fabian Glaser, David M. Steinberg, Ilya A. Vakser, Nir Ben-Tal posted to aa-propensity binding-site-analysis protein-interface protein-protein p1 by nickolay on 2006-11-17 16:26:47 as along with 3 people Evangelia ladab timg
	Variation in structural location and amino acid conservation of functional sites in protein domain families. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by B. Pils, R. R. Copley, J. Schultz posted to binding-site-analysis conservation protein-protein residue-conservation structural structure-function by nickolay on 2006-10-24 21:21:27 as
	Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. [My Copy] J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795. by X. Li, O. Keskin, B. Ma, R. Nussinov, J. Liang posted to aa-propensity binding-site-analysis hot-spots surface by nickolay on 2006-10-24 21:09:45 as along with 10 people and 2 groups barry baaden bicko j3xucite bluvsh1 xz grahamc Evangelia ladab paolomarcatili structural_bioinformatics Bioinformatics
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by B. Ma, T. Elkayam, H. Wolfson, R. Nussinov posted to binding-site-analysis residue-conservation surface p1 by nickolay on 2006-10-24 21:07:11 as along with 10 people and 2 groups tbinbal dkoveal mdimmic barry bicko lyongu choonpeng cjeans carlescorbi ladab structural_bioinformatics Bioinformatics
	Correlation between sequence hydrophobicity and surface-exposure pattern of database proteins [My Copy] Protein Sci, Vol. 13, No. 3. (1 March 2004), pp. 752-762. by Susanne Moelbert, Eldon Emberly, Chao Tang posted to aa-propensity binding-site-analysis residue-conservation surface p1 by nickolay on 2006-10-04 16:10:06 as along with 1 person melo_mcr
	A new method for estimating the importance of hydrophobic groups in the binding site of a protein. [My Copy] J Med Chem, Vol. 48, No. 4. (24 February 2005), pp. 1069-1078. by M. D. Kelly, R. L. Mancera posted to aa-propensity binding binding-site-analysis side-chains by nickolay on 2006-08-18 19:46:14 as along with 3 people and 2 groups barry blackbart ladab structural_bioinformatics Bioinformatics

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p2	56
binding	47
protein	42
algorithm	35
protein-ligand	32
to-be-tagged	31
structure	29
site	28
prediction	25
bibtex-import	22
structure-function	17
surface	17
database	16
docking	16
bsc	14
review	14
application	13
ligand	13
nov09	13
protein-protein	13
p1	12
identification	11
alignment	10
comparison	10
binding-site-analysis	9
method	9
pattern	9
pdb	9
residue-conservation	9
aa-propensity	8
flexibility	8
moad	8
similarity	8
bs-similarity	7
wrmsd	7
hot-spots	6
drug	5
geometric-hashing	5
msa	5
props	5
scoring-functions	5
sep09	5
structure-searching	5
thermodynamics	5
amino-acids	4
cheminformatics	4
domain-classification	4
function	4
geometric	4
geometry-based	4
interaction	4
network	4
protein-interface	4
side-chains	4
software	4
structure-classification	4
affinity	3
cadd	3
enzyme	3
evolution	3
force-field	3
graph-theory	3
lead_discovery	3
molecular_dynamics	3
oct09	3
printed	3
sequence	3
small	3
superposition	3
aug09	2
binding_site	2
chemistry	2
classification	2
clique	2
concavity	2
dd	2
dds	2
information-theory	2
insulin	2
insulin-sensitivity	2
knowledge-based-potentials	2
lead_optimization	2
machine-learning	2
mapping	2
moe	2
physicochemical	2
similarity-network	2
solvent	2
structural	2
structural-conservation	2
structure-activity	2
virtual-screening	2
action	1
allostery	1
amber	1
aromatics	1
basal-glucose	1
beta-cells	1
bioactivity	1
biological_relevance	1
calatytic	1
catalysis	1
charmm	1
classifier	1
clustering	1
cmoparison	1
compound_libraries	1
computational	1
conservation	1
data	1
data-integration	1
de-novo	1
distance	1
drug_discovery_and_development	1
electrostatics	1
energy_minimization	1
fingerprint	1
folding	1
gi	1
gometry-based	1
gpcr	1
graph	1
hinge	1
hot_spots	1
hyfrophobic-effect	1
indentification	1
industry	1
itc	1
kinase	1
lab	1
ligand-volume	1
localization	1
mc	1
metabolism	1
metabolome	1
metric	1
mining	1
model	1
molecule	1
multiple	1
multiple_structural_alignment	1
neural	1
ontology	1
opinion	1
package	1
pathway	1
pca	1
pharmacophore	1
property	1
python	1
qsar	1
r	1
rapid	1
residue	1
scoring	1
screening	1
server	1
shape	1
simulation	1
tanimoto	1
target	1
topology	1
visualization	1
web-based	1

nickolay's binding-site-analysis [9 articles] Export

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