nickolay's bsc [14 articles] Export

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	Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins [My Copy] BMC Bioinformatics, Vol. 8 (05 May 2007), 147. by Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan posted to algorithm binding bsc interaction prediction props protein site by nickolay on 2009-03-29 17:40:36 as along with 4 people iaolier bicko zwang marti
	sc-PDB: an annotated database of druggable binding sites from the Protein Data Bank. [My Copy] J Chem Inf Model, Vol. 46, No. 2. (r 2006), pp. 717-727. by E. Kellenberger, P. Muller, C. Schalon, G. Bret, N. Foata, D. Rognan posted to binding bsc database drug ligand moad protein site by nickolay on 2008-08-27 15:49:30 as along with 6 people and 1 group BragilMassoud caporaso schlauchi daevans ramensky sim82 biomedical-nlp
	A simple and fuzzy method to align and compare druggable ligand-binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Claire Schalon, Jean-Sébastien Surgand, Esther Kellenberger, Didier Rognan posted to algorithm binding bsc comparison fingerprint protein similarity site by nickolay on 2008-08-27 14:14:35 as along with 3 people tjimenez bicko willpitt
	Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i105-111. by Rafael Najmanovich, Natalja Kurbatova, Janet Thornton posted to algorithm alignment binding bsc comparison graph site structure by nickolay on 2008-08-19 20:51:58 as along with 7 people iaolier krapnik ramensky apaydin tjimenez neils reyez
	Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures. [My Copy] Proteins (1 May 2008) by Mizuki Morita, Shugo Nakamura, Kentaro Shimizu posted to algorithm binding bsc ligand prediction protein site structure by nickolay on 2008-07-14 20:02:25 as
	How Different are Structurally Flexible and Rigid Binding Sites? Sequence and Structural Features Discriminating Proteins that Do and Do not Undergo Conformational Change upon Ligand Binding. [My Copy] J Mol Biol (29 September 2006) by Kannan Gunasekaran, Ruth Nussinov posted to binding bsc comparison flexibility protein review site structure by nickolay on 2008-07-08 15:05:37 as along with 10 people and 1 group aqeel reyez BragilMassoud dgruiz radestock lna yongzhao choonpeng weisblum higueruelo TSRI_MGL
	From the Similarity Analysis of Protein Cavities to the Functional Classification of Protein Families Using Cavbase [My Copy] Journal of Molecular Biology, Vol. 359, No. 4. (16 June 2006), pp. 1023-1044. by Daniel Kuhn, Nils Weskamp, Stefan Schmitt, Eyke Hullermeier, Gerhard Klebe posted to algorithm binding bsc comparison physicochemical similarity site by nickolay on 2008-07-08 15:03:05 as along with 2 people apaydin stege
	Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007) by R. J. Najmanovich, A. Allali-Hassani, R. J. Morris, et al.L. Dombrovsky, P. W. Pan, M. Vedadi, A. N. Plotnikov, A. Edwards, C. Arrowsmith, J. M. Thornton posted to binding bsc cmoparison protein review similarity site structure by nickolay on 2008-07-08 14:47:52 as along with 1 person grottenolm
	LigProf: A simple tool for in silico prediction of ligand-binding sites [My Copy] Journal of Molecular Modeling, Vol. 13, No. 3. (March 2007), pp. 445-455. by Koczyk, Grzegorz, Wyrwicz, Lucjan, Rychlewski, Leszek posted to binding bsc comparison prediction protein site structure by nickolay on 2008-07-08 14:38:30 as along with 1 person iaolier
	Do Structurally Similar Ligands Bind in a Similar Fashion? [My Copy] Journal of Medicinal Chemistry, Vol. 49, No. 23. (1 November 2006), pp. 6716-6725. by Jonas Bostrom, Anders Hogner, Stefan Schmitt posted to binding bsc comparison dds ligand protein similarity site structure by nickolay on 2008-07-08 14:24:45 as along with 4 people klexa schlauchi daevans superpyrin
	Structure-based identification of binding sites, native ligands and potential inhibitors for G-protein coupled receptors. [My Copy] Proteins, Vol. 51, No. 3. (15 May 2003), pp. 423-433. by C. N. Cavasotto, A. J. Orry, R. A. Abagyan posted to algorithm binding bsc flexibility gpcr method prediction protein site small by nickolay on 2008-07-08 14:04:41 as
	Comprehensive identification of "druggable" protein ligand binding sites. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 15, No. 2. (2004), pp. 31-41. by J. An, M. Totrov, R. Abagyan posted to algorithm binding bsc de-novo physicochemical prediction protein site structure by nickolay on 2008-07-08 13:56:28 as along with 1 person sriram_s
	Searching for functional sites in protein structures. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 3-7. by S. Jones, J. M. Thornton posted to binding bsc function prediction protein review site structure by nickolay on 2008-06-10 19:06:59 as along with 7 people and 1 group qluo BragilMassoud LeightonP chrn Einat proteasome jwm structural_bioinformatics
	Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity. [My Copy] Proteins, Vol. 71, No. 3. (15 May 2008), pp. 1288-1306. by Katrin Kupas, Alfred Ultsch, Gerhard Klebe posted to algorithm binding bsc comparison identification protein site by nickolay on 2007-12-04 21:17:45 as along with 4 people and 1 group rschulz sobolevnrm carlescorbi higueruelo baker-group

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p2	56
binding	47
protein	42
algorithm	34
protein-ligand	32
to-be-tagged	31
structure	29
site	28
prediction	25
bibtex-import	22
structure-function	17
database	16
docking	16
surface	16
bsc	14
review	14
application	13
ligand	13
nov09	13
protein-protein	13
p1	12
identification	11
alignment	10
binding-site-analysis	9
comparison	9
method	9
pattern	9
pdb	9
residue-conservation	9
aa-propensity	8
flexibility	8
moad	8
similarity	8
bs-similarity	7
wrmsd	7
hot-spots	6
geometric-hashing	5
msa	5
props	5
scoring-functions	5
sep09	5
structure-searching	5
thermodynamics	5
amino-acids	4
cheminformatics	4
domain-classification	4
drug	4
function	4
geometric	4
geometry-based	4
interaction	4
network	4
protein-interface	4
side-chains	4
software	4
structure-classification	4
affinity	3
cadd	3
enzyme	3
evolution	3
force-field	3
graph-theory	3
lead_discovery	3
molecular_dynamics	3
oct09	3
printed	3
sequence	3
small	3
superposition	3
aug09	2
chemistry	2
clique	2
concavity	2
dd	2
dds	2
information-theory	2
insulin	2
insulin-sensitivity	2
knowledge-based-potentials	2
lead_optimization	2
machine-learning	2
moe	2
molecule	2
physicochemical	2
similarity-network	2
solvent	2
structural	2
structural-conservation	2
structure-activity	2
virtual-screening	2
action	1
allostery	1
amber	1
aromatics	1
basal-glucose	1
beta-cells	1
binding_site	1
bioactivity	1
biological_relevance	1
calatytic	1
catalysis	1
charmm	1
classification	1
classifier	1
clustering	1
cmoparison	1
compound_libraries	1
computational	1
conservation	1
data	1
data-integration	1
de-novo	1
distance	1
drug_discovery_and_development	1
electrostatics	1
energy_minimization	1
fingerprint	1
folding	1
gi	1
gometry-based	1
gpcr	1
graph	1
hinge	1
hot_spots	1
hyfrophobic-effect	1
indentification	1
industry	1
itc	1
kinase	1
lab	1
ligand-volume	1
localization	1
mapping	1
mc	1
metabolism	1
metabolome	1
metric	1
mining	1
model	1
multiple	1
multiple_structural_alignment	1
neural	1
ontology	1
opinion	1
package	1
pathway	1
pca	1
pharmacophore	1
property	1
python	1
qsar	1
r	1
residue	1
scoring	1
screening	1
server	1
simulation	1
tanimoto	1
target	1
topology	1
visualization	1
web-based	1

nickolay's bsc [14 articles] Export

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