nickolay's database [16 articles] Export

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	Binding MOAD, a high-quality protein-ligand database. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by M. L. Benson, R. D. Smith, N. A. Khazanov, et al.B. Dimcheff, J. Beaver, P. Dresslar, J. Nerothin, H. A. Carlson posted to p2 binding database ligand moad protein by nickolay on 2009-01-21 20:42:40 as along with 6 people medic0747 pauldobson reyez massivemayhem higueruelo guhjy
	The Protein Data Bank (PDB), Its Related Services and Software Tools as Key Components for In Silico Guided Drug Discovery [My Copy] J. Med. Chem. (1 November 2008) by Johannes Kirchmair, Patrick Markt, Simona Distinto, et al.Daniela Schuster, Gudrun M. Spitzer, Klaus R. Liedl, Thierry Langer, Gerhard Wolber posted to database pdb protein review structure by nickolay on 2009-01-13 18:59:57 as along with 2 people guhjy reyez
	sc-PDB: an annotated database of druggable binding sites from the Protein Data Bank. [My Copy] J Chem Inf Model, Vol. 46, No. 2. (r 2006), pp. 717-727. by E. Kellenberger, P. Muller, C. Schalon, G. Bret, N. Foata, D. Rognan posted to binding bsc database drug ligand moad protein site by nickolay on 2008-08-27 15:49:30 as along with 6 people and 1 group BragilMassoud caporaso schlauchi daevans ramensky sim82 biomedical-nlp
	Amino acid quantitative structure property relationship database: a web-based platform for quantitative investigations of amino acids [My Copy] Protein Engineering, Design and Selection, Vol. 20, No. 7. (1 July 2007), pp. 347-351. by Yi Lu, Blazej Bulka, Marie Desjardins, Stephen J. Freeland posted to amino-acids database property structure web-based by nickolay on 2007-08-22 16:37:46 as
	A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1043-1055. by O. Keskin, C. J. Tsai, H. Wolfson, R. Nussinov posted to database protein-interface protein-protein by nickolay on 2006-10-24 21:18:12 as along with 8 people flbarroso marti thomaskelder baaden bicko chad_davis henschel ladab
	MSDsite: A database search and retrieval system for the analysis and viewing of bound ligands and active sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 58, No. 1. (2005), pp. 190-199. by Adel Golovin, Dimitris Dimitropoulos, Tom Oldfield, Abdelkrim Rachedi, Kim Henrick posted to database protein-ligand by nickolay on 2006-08-18 19:41:03 as along with 2 people and 1 group caporaso massivemayhem biomedical-nlp
	PDBLIG: Classification of Small Molecular Protein Binding in the Protein Data Bank [My Copy] J. Med. Chem., Vol. 47, No. 15. (15 July 2004), pp. 3807-3816. by A. J. Chalk, C. L. Worth, J. P. Overington, A. W. E. Chan posted to database protein-ligand by nickolay on 2006-08-18 19:04:14 as along with 2 people massivemayhem higueruelo
	Ligand Depot: a data warehouse for ligands bound to macromolecules [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2153-2155. by Zukang Feng, Li Chen, Himabindu Maddula, et al.Ozgur Akcan, Rose Oughtred, Helen M. Berman, John Westbrook posted to database protein-ligand by nickolay on 2006-08-18 19:03:05 as along with 5 people flbarroso reyez BragilMassoud nachtalp bicko
	Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein-ligand complexes [My Copy] Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1856-1857. by Dushyanthan Puvanendrampillai, John B. Mitchell posted to database protein-ligand by nickolay on 2006-08-18 19:02:26 as along with 1 person massivemayhem
	Fold Independent Structural Comparisons of Protein-Ligand Binding Sites for Exploring Functional Relationships [My Copy] Journal of Molecular Biology, Vol. 355, No. 5. (3 February 2006), pp. 1112-1124. by Nicola D. Gold, Richard M. Jackson posted to application bs-similarity database geometric-hashing moad protein-ligand structure-searching by nickolay on 2006-06-28 20:53:13 as
	LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. [My Copy] Bioinformatics, Vol. 18, No. 1. (January 2002), pp. 200-201. by A. C. Stuart, V. A. Ilyin, A. Sali posted to database moad protein-ligand by nickolay on 2006-03-02 02:22:14 as along with 1 person blackbart
	Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions. [My Copy] J Mol Biol, Vol. 326, No. 2. (14 February 2003), pp. 607-620. by M. Hendlich, A. Bergner, J. Günther, G. Klebe posted to application binding database moad pdb protein-ligand by nickolay on 2005-12-06 02:10:41 as along with 2 people blackbart massivemayhem
	Ligand-protein database: linking protein-ligand complex structures to binding data. [My Copy] J Med Chem, Vol. 44, No. 22. (25 October 2001), pp. 3592-3598. by O. Roche, R. Kiyama, C. L. Brooks posted to binding database protein-ligand by nickolay on 2005-12-06 02:06:34 as along with 2 people blackbart massivemayhem
	The PDBbind Database: Methodologies and Updates [My Copy] Journal of Medicinal Chemistry, Vol. 48, No. 12. (1 June 2005), pp. 4111-4119. by Renxiao Wang, Xueliang Fang, Yipin Lu, Chao-Yie Yang, Shaomeng Wang posted to binding database moad protein-ligand by nickolay on 2005-12-06 02:04:47 as along with 2 people reyez blackbart
	Binding MOAD (Mother Of All Databases). [My Copy] Proteins, Vol. 60, No. 3. (Aug 2005), pp. 333-340. by Liegi Hu, Mark L. Benson, Richard D. Smith, Michael G. Lerner, Heather A. Carlson posted to protein-ligand pdb p2 p1 moad lab database bibtex-import by nickolay on 2005-12-05 16:20:57 as
	Identification of protein functions from a molecular surface database, eF-site. [My Copy] J Struct Funct Genomics, Vol. 2, No. 1. (2002), pp. 9-22. by Kengo Kinoshita, Jun'ichi Furui, Haruki Nakamura posted to application bibtex-import binding clique database graph-theory structure-function surface by nickolay on 2005-12-05 16:18:20 as

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p2	56
binding	47
protein	42
algorithm	34
protein-ligand	32
to-be-tagged	31
structure	29
site	28
prediction	25
bibtex-import	22
structure-function	17
database	16
docking	16
surface	16
bsc	14
review	14
application	13
ligand	13
nov09	13
protein-protein	13
p1	12
identification	11
alignment	10
binding-site-analysis	9
comparison	9
method	9
pattern	9
pdb	9
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aa-propensity	8
flexibility	8
moad	8
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bs-similarity	7
wrmsd	7
hot-spots	6
geometric-hashing	5
msa	5
props	5
scoring-functions	5
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structure-searching	5
thermodynamics	5
amino-acids	4
cheminformatics	4
domain-classification	4
drug	4
function	4
geometric	4
geometry-based	4
interaction	4
network	4
protein-interface	4
side-chains	4
software	4
structure-classification	4
affinity	3
cadd	3
enzyme	3
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force-field	3
graph-theory	3
lead_discovery	3
molecular_dynamics	3
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printed	3
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lead_optimization	2
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similarity-network	2
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structure-activity	2
virtual-screening	2
action	1
allostery	1
amber	1
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beta-cells	1
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mc	1
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scoring	1
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simulation	1
tanimoto	1
target	1
topology	1
visualization	1
web-based	1

nickolay's database [16 articles] Export

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