nickolay's identification [11 articles] Export

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	A novel and efficient tool for locating and characterizing protein cavities and binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (11 September 2009), NA. by Ashutosh Tripathi, Glen E. Kellogg posted to nov09 identification binding_site by nickolay on 2009-11-03 20:50:02 as along with 2 people higueruelo ahmetbakan
	Identification of protein functional surfaces by the concept of a split pocket [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 959-976. by Yan Y. Tseng, Wen-Hsiung Li posted to site protein oct09 identification binding by nickolay on 2009-10-07 15:11:46 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	Identification of the Druggable Concavity in Homology Models Using the PLB Index [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 6. (1 November 2007), pp. 2287-2292. by Shinji Soga, Hiroki Shirai, Masato Kobori, Noriaki Hirayama posted to binding-site-analysis concavity identification p1 protein surface by nickolay on 2009-08-06 16:15:47 as
	Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity. [My Copy] Proteins, Vol. 71, No. 3. (15 May 2008), pp. 1288-1306. by Katrin Kupas, Alfred Ultsch, Gerhard Klebe posted to algorithm binding bsc comparison identification protein site by nickolay on 2007-12-04 21:17:45 as along with 4 people and 1 group rschulz sobolevnrm carlescorbi higueruelo baker-group
	On the nature of cavities on protein surfaces: Application to the identification of drug-binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (13 February 2006), pp. 892-906. by Murad Nayal, Barry Honig posted to binding classifier identification site small by nickolay on 2007-01-18 19:09:10 as along with 6 people and 1 group ubcg08l iaolier BragilMassoud pansapiens tjimenez Einat structural_bioinformatics
	LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation [My Copy] BMC Structural Biology, Vol. 6, No. 1. (24 September 2006), 19. by Bingding Huang, Michael Schroeder posted to algorithm binding geometric identification server site software by nickolay on 2007-01-18 18:58:13 as along with 6 people superpyrin tomjad iaolier richardbickerton reyez tjimenez
	Recognition of docking sites on a protein using [beta]-shape based on Voronoi diagram of atoms [My Copy] Computer-Aided Design, Vol. 38, No. 5. (May 2006), pp. 431-443. by Deok-Soo Kim, Cheol-Hyung Cho, Donguk Kim, Youngsong Cho posted to algorithm binding geometric identification protein site by nickolay on 2007-01-18 18:56:02 as
	Pattern recognition strategies for molecular surfaces: III. Binding site prediction with a neural network. [My Copy] J Comput Chem, Vol. 25, No. 6. (30 April 2004), pp. 779-789. by M. Keil, T. E. Exner, J. Brickmann posted to binding identification network neural prediction protein site surface by nickolay on 2007-01-18 18:51:41 as along with 1 person kaarsinogen
	Characterization of protein-ligand interaction sites using experimental and computational methods. [My Copy] Current opinion in drug discovery & development, Vol. 9, No. 3. (May 2006), pp. 354-362. by Sandor Vajda, Frank Guarnieri posted to binding computational identification mapping mc review site solvent by nickolay on 2007-01-03 15:16:19 as along with 3 people and 1 group ubcg08l kentsis caporaso biomedical-nlp
	LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins. [My Copy] J Mol Graph Model, Vol. 15, No. 6. (December 1997) by M. Hendlich, F. Rippmann, G. Barnickel posted to algorithm binding geometric identification site by nickolay on 2006-12-04 21:14:14 as along with 1 person tjimenez
	The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria. [My Copy] J Mol Biol, Vol. 256, No. 1. (16 February 1996), pp. 201-213. by K. P. Peters, J. Fauck, C. Frömmel posted to algorithm binding geometric identification site by nickolay on 2006-10-04 17:22:44 as along with 3 people ramiro2k tjimenez sriram_s

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p2	56
binding	47
protein	42
algorithm	35
protein-ligand	32
to-be-tagged	31
structure	29
site	28
prediction	25
bibtex-import	22
structure-function	17
surface	17
database	16
docking	16
bsc	14
review	14
application	13
ligand	13
nov09	13
protein-protein	13
p1	12
identification	11
alignment	10
comparison	10
binding-site-analysis	9
method	9
pattern	9
pdb	9
residue-conservation	9
aa-propensity	8
flexibility	8
moad	8
similarity	8
bs-similarity	7
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msa	5
props	5
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sep09	5
structure-searching	5
thermodynamics	5
amino-acids	4
cheminformatics	4
domain-classification	4
function	4
geometric	4
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interaction	4
network	4
protein-interface	4
side-chains	4
software	4
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affinity	3
cadd	3
enzyme	3
evolution	3
force-field	3
graph-theory	3
lead_discovery	3
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oct09	3
printed	3
sequence	3
small	3
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binding_site	2
chemistry	2
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clique	2
concavity	2
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insulin-sensitivity	2
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moe	2
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screening	1
server	1
shape	1
simulation	1
tanimoto	1
target	1
topology	1
visualization	1
web-based	1

nickolay's identification [11 articles] Export

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