Register | Log in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

nickolay's site [20 articles]

Recent papers added to nickolay's library classified by the tag site. You can also see everyone's site.
  • Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i105-111.
    by Rafael Najmanovich, Natalja Kurbatova, Janet Thornton
    posted to structure site comparison binding atomic alignment algorithm by nickolay on 2008-08-19 20:51:58 as read along with 2 people reyez neils
  • How Different are Structurally Flexible and Rigid Binding Sites? Sequence and Structural Features Discriminating Proteins that Do and Do not Undergo Conformational Change upon Ligand Binding.
    J Mol Biol (29 September 2006)
    by Kannan Gunasekaran, Ruth Nussinov
    posted to site flexibility comparison binding by nickolay on 2008-07-08 15:05:37 as ** along with 8 people and 1 group higueruelo BragilMassoud dgruiz radestock lna yongzhao choonpeng weisblum TSRI_MGL
  • From the Similarity Analysis of Protein Cavities to the Functional Classification of Protein Families Using Cavbase
    Journal of Molecular Biology, Vol. 359, No. 4. (16 June 2006), pp. 1023-1044.
    by Daniel Kuhn, Nils Weskamp, Stefan Schmitt, Eyke Hullermeier, Gerhard Klebe
    posted to site comparison classifier binding algorithm by nickolay on 2008-07-08 15:03:05 as ** along with 2 people apaydin stege
  • LigProf: A simple tool for in silico prediction of ligand-binding sites
    Journal of Molecular Modeling, Vol. 13, No. 3. (March 2007), pp. 445-455.
    by Koczyk, Grzegorz, Wyrwicz, Lucjan, Rychlewski, Leszek
    posted to software site server motif comparison binding by nickolay on 2008-07-08 14:38:30 as **
  • Do Structurally Similar Ligands Bind in a Similar Fashion?
    J. Med. Chem., Vol. 49, No. 23. (16 November 2006), pp. 6716-6725.
    by J Bostrom, A Hogner, S Schmitt
    posted to site ligand-based comparison binding by nickolay on 2008-07-08 14:24:45 as read along with 3 people schlauchi daevans superpyrin
  • Structure-based identification of binding sites, native ligands and potential inhibitors for G-protein coupled receptors.
    Proteins, Vol. 51, No. 3. (15 May 2003), pp. 423-433.
    by CN Cavasotto, AJ Orry, RA Abagyan
    posted to small site identification gpcr binding algorithm by nickolay on 2008-07-08 14:04:41 as **
  • Comprehensive identification of "druggable" protein ligand binding sites.
    Genome Inform Ser Workshop Genome Inform, Vol. 15, No. 2. (2004), pp. 31-41.
    by J An, M Totrov, R Abagyan
    posted to software site identification binding algorithm by nickolay on 2008-07-08 13:56:28 as ** along with 1 person sriram_s
  • Searching for functional sites in protein structures
    Current Opinion in Chemical Biology, Vol. 8, No. 1. (February 2004), pp. 3-7.
    by Susan Jones, Janet M Thornton
    posted to structure site search review read protein printed function by nickolay on 2008-06-10 19:06:59 as *** along with 6 people and 1 group jwm BragilMassoud LeightonP chrn Einat proteasome structural_bioinformatics
  • Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Katrin Kupas, Alfred Ultsch, Gerhard Klebe
    posted to surface site protein printed neural networks identification function comparison binding analysis by nickolay on 2007-12-04 21:17:45 as ***** along with 3 people and 1 group higueruelo sobolevnrm carlescorbi baker-group
  • On the nature of cavities on protein surfaces: Application to the identification of drug-binding sites.
    Proteins (13 February 2006)
    by Murad Nayal, Barry Honig
    posted to small site identification classifier binding by nickolay on 2007-01-18 19:09:10 as ** along with 4 people and 1 group BragilMassoud pansapiens tjimenez Einat structural_bioinformatics
  • Localization of binding sites in protein structures by optimization of a composite scoring function.
    Protein Sci, Vol. 15, No. 10. (October 2006), pp. 2366-2380.
    by A Rossi, MA Marti-Renom, A Sali
    posted to structure site scoring protein printed localization function binding by nickolay on 2007-01-18 19:05:03 as ** along with 2 people tjimenez MaggieYe
  • LIGSITEcsc: Predicting ligand binding sites using the Connolly surface and degree of conservation
    BMC Structural Biology, Vol. 6 (24 September 2006), 19.
    by Bingding Huang, Michael Schroeder
    posted to software site server identification geometric binding algorithm by nickolay on 2007-01-18 18:58:13 as ***** along with 1 person tjimenez
  • Recognition of docking sites on a protein using [beta]-shape based on Voronoi diagram of atoms
    Computer-Aided Design, Vol. 38, No. 5. (May 2006), pp. 431-443.
    by Deok-Soo Kim, Cheol-Hyung Cho, Donguk Kim, Youngsong Cho
    posted to site protein identification geometric binding algorithm by nickolay on 2007-01-18 18:56:02 as **
  • Pattern recognition strategies for molecular surfaces: III. Binding site prediction with a neural network.
    J Comput Chem, Vol. 25, No. 6. (30 April 2004), pp. 779-789.
    by M Keil, TE Exner, J Brickmann
    posted to surface site protein prediction neural network identification binding by nickolay on 2007-01-18 18:51:41 as *** along with 1 person kaarsinogen
  • Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1908-1916.
    by Alasdair T Laurie, Richard M Jackson
    posted to site protein printed prediction method binding by nickolay on 2007-01-18 18:49:52 as *** along with 1 person sriram_s
  • Fast prediction and visualization of protein binding pockets with PASS.
    J Comput Aided Mol Des, Vol. 14, No. 4. (May 2000), pp. 383-401.
    by GP Brady, PF Stouten
    posted to visualization site protein printed prediction method binding by nickolay on 2007-01-17 20:22:25 as *** along with 1 person tjimenez
  • Characterization of protein-ligand interaction sites using experimental and computational methods.
    Curr Opin Drug Discov Devel, Vol. 9, No. 3. (May 2006), pp. 354-362.
    by S Vajda, F Guarnieri
    posted to solvent site review mc mapping identification computational binding by nickolay on 2007-01-03 15:16:19 as ** along with 2 people and 1 group kentsis caporaso biomedical-nlp
  • Identification and mapping of small-molecule binding sites in proteins: computational tools for structure-based drug design
    Il Farmaco, Vol. 57, No. 3. (1 March 2002), pp. 243-251.
    by Christoph Sotriffer, Gerhard Klebe
    posted to site review indentification comparison binding algorithm by nickolay on 2006-12-05 21:36:58 as read
  • LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins.
    J Mol Graph Model, Vol. 15, No. 6. (December 1997)
    by M Hendlich, F Rippmann, G Barnickel
    posted to site identification geometric binding algorithm by nickolay on 2006-12-04 21:14:14 as ** along with 1 person tjimenez
  • The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.
    J Mol Biol, Vol. 256, No. 1. (16 February 1996), pp. 201-213.
    by KP Peters, J Fauck, C Frömmel
    posted to site identification geometric binding algorithm by nickolay on 2006-10-04 17:22:44 as ** along with 2 people tjimenez sriram_s
    • Note: You may cite this page as: http://www.citeulike.org/user/nickolay/tag/site

    RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.