nickolay's structure-function [17 articles] Export

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	Variation in structural location and amino acid conservation of functional sites in protein domain families. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by B. Pils, R. R. Copley, J. Schultz posted to binding-site-analysis conservation protein-protein residue-conservation structural structure-function by nickolay on 2006-10-24 21:21:27 as
	Protein-ligand interactions: exchange processes and determination of ligand conformation and protein-ligand contacts. [My Copy] Methods Enzymol, Vol. 239 (1994), pp. 657-700. by L. Y. Lian, I. L. Barsukov, M. J. Sutcliffe, K. H. Sze, G. C. Roberts posted to binding ligand protein-ligand structure-function by nickolay on 2006-08-18 18:53:54 as along with 1 person dgruiz
	Surface motifs by a computer vision technique: Searches, detection, and implications for protein-ligand recognition [My Copy] Proteins: Structure, Function, and Genetics, Vol. 16, No. 3. (1993), pp. 278-292. by Daniel Fischer, Raquel Norel, Haim Wolfson, Ruth Nussinov posted to bs-similarity geometric-hashing method protein-ligand structure-function structure-searching by nickolay on 2006-06-29 22:39:15 as
	Efficient identification of side-chain patterns using a multidimensional index tree. [My Copy] Proteins, Vol. 51, No. 1. (1 April 2003), pp. 96-108. by T. Hamelryck posted to bs-similarity geometry-based method side-chains structure-function by nickolay on 2006-06-28 15:47:47 as along with 2 people and 2 groups jwm Evangelia Radiation_Damage Stressosome
	Finding important sites in protein sequences [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 23. (12 November 2002), pp. 14764-14771. by Peter J. Bickel, Katherina J. Kechris, Philip C. Spector, Gary J. Wedemayer, Alexander N. Glazer posted to evolution prediction residue-conservation structure-function by nickolay on 2006-03-02 02:18:02 as along with 4 people qluo RebeccaHamer analogAI sriram_s
	Inferring Functional Relationships of Proteins from Local Sequence and Spatial Surface Patterns [My Copy] Journal of Molecular Biology, Vol. 332, No. 2. (12 September 2003), pp. 505-526. by Andrew T. Binkowski, Larisa Adamian, Jie Liang posted to bs-similarity gometry-based method pattern prediction protein-ligand structural-conservation structure-function by nickolay on 2005-12-16 19:26:06 as
	Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3341-3344. by A. Stark, R. B. Russell posted to algorithm application pattern structure-function structure-searching by nickolay on 2005-12-08 23:30:47 as along with 2 people karbak chad_davis
	The natural history of protein domains. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 31 (2002), pp. 45-71. by C. P. Ponting, R. R. Russell posted to domain-classification review structure-function by nickolay on 2005-12-08 23:27:49 as along with 3 people BioNica ssgong IrinaMoreira
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted to prediction review structure-function by nickolay on 2005-12-06 01:56:43 as along with 18 people and 3 groups krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny dgront rsantana mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
	Recognition of functional sites in protein structures. [My Copy] J Mol Biol, Vol. 339, No. 3. (Jun 2004), pp. 607-633. by Alexandra S. Peleg, Ruth Nussinov, Haim J. Wolfson posted to bibtex-import binding pattern structure-function by nickolay on 2005-12-05 16:20:45 as
	From protein structure to biochemical function? [My Copy] J Struct Funct Genomics, Vol. 4, No. 2-3. (2003), pp. 167-177. by Roman A. Laskowski, James D. Watson, Janet M. Thornton posted to application bibtex-import binding prediction structure-function by nickolay on 2005-12-05 16:19:05 as
	Identification of protein functions from a molecular surface database, eF-site. [My Copy] J Struct Funct Genomics, Vol. 2, No. 1. (2002), pp. 9-22. by Kengo Kinoshita, Jun'ichi Furui, Haruki Nakamura posted to application bibtex-import binding clique database graph-theory structure-function surface by nickolay on 2005-12-05 16:18:20 as
	Generation and analysis of a protein-protein interface data set with similar chemical and spatial patterns of interactions. [My Copy] Proteins, Vol. 61, No. 1. (Oct 2005), pp. 6-20. by Shira Mintz, Alexandra S. Peleg, Haim J. Wolfson, Ruth Nussinov posted to algorithm application bibtex-import pattern protein-protein structure-function by nickolay on 2005-12-05 16:16:24 as
	ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. [My Copy] Bioinformatics, Vol. 19, No. 1. (Jan 2003), pp. 163-164. by Fabian Glaser, Tal Pupko, Inbal Paz, et al.Rachel E. Bell, Dalit B. Shental, Eric Martz, Nir B. Tal posted to algorithm application bibtex-import protein-protein residue-conservation structure-function by nickolay on 2005-12-05 16:16:01 as
	Protein functional epitopes: hot spots, dynamics and combinatorial libraries. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 3. (Jun 2001), pp. 364-369. by B. Ma, H. J. Wolfson, R. Nussinov posted to bibtex-import flexibility hot-spots protein-ligand residue-conservation structure-function by nickolay on 2005-12-05 16:15:43 as
	Structural stability of binding sites: consequences for binding affinity and allosteric effects. [My Copy] Proteins, Vol. Suppl 4 (2000), pp. 63-71. by I. Luque, E. Freire posted to bibtex-import binding protein-ligand protein-protein structure-function thermodynamics by nickolay on 2005-12-05 16:15:31 as
	Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. [My Copy] J Mol Biol, Vol. 279, No. 5. (Jun 1998), pp. 1211-1227. by R. B. Russell posted to aa-propensity algorithm alignment bibtex-import pattern structure-function by nickolay on 2005-12-05 16:14:38 as

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p2	56
binding	47
protein	42
algorithm	35
protein-ligand	32
to-be-tagged	31
structure	29
site	28
prediction	25
bibtex-import	22
structure-function	17
surface	17
database	16
docking	16
bsc	14
review	14
application	13
ligand	13
nov09	13
protein-protein	13
p1	12
identification	11
alignment	10
comparison	10
binding-site-analysis	9
method	9
pattern	9
pdb	9
residue-conservation	9
aa-propensity	8
flexibility	8
moad	8
similarity	8
bs-similarity	7
wrmsd	7
hot-spots	6
drug	5
geometric-hashing	5
msa	5
props	5
scoring-functions	5
sep09	5
structure-searching	5
thermodynamics	5
amino-acids	4
cheminformatics	4
domain-classification	4
function	4
geometric	4
geometry-based	4
interaction	4
network	4
protein-interface	4
side-chains	4
software	4
structure-classification	4
affinity	3
cadd	3
enzyme	3
evolution	3
force-field	3
graph-theory	3
lead_discovery	3
molecular_dynamics	3
oct09	3
printed	3
sequence	3
small	3
superposition	3
aug09	2
binding_site	2
chemistry	2
classification	2
clique	2
concavity	2
dd	2
dds	2
information-theory	2
insulin	2
insulin-sensitivity	2
knowledge-based-potentials	2
lead_optimization	2
machine-learning	2
mapping	2
moe	2
physicochemical	2
similarity-network	2
solvent	2
structural	2
structural-conservation	2
structure-activity	2
virtual-screening	2
action	1
allostery	1
amber	1
aromatics	1
basal-glucose	1
beta-cells	1
bioactivity	1
biological_relevance	1
calatytic	1
catalysis	1
charmm	1
classifier	1
clustering	1
cmoparison	1
compound_libraries	1
computational	1
conservation	1
data	1
data-integration	1
de-novo	1
distance	1
drug_discovery_and_development	1
electrostatics	1
energy_minimization	1
fingerprint	1
folding	1
gi	1
gometry-based	1
gpcr	1
graph	1
hinge	1
hot_spots	1
hyfrophobic-effect	1
indentification	1
industry	1
itc	1
kinase	1
lab	1
ligand-volume	1
localization	1
mc	1
metabolism	1
metabolome	1
metric	1
mining	1
model	1
molecule	1
multiple	1
multiple_structural_alignment	1
neural	1
ontology	1
opinion	1
package	1
pathway	1
pca	1
pharmacophore	1
property	1
python	1
qsar	1
r	1
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residue	1
scoring	1
screening	1
server	1
shape	1
simulation	1
tanimoto	1
target	1
topology	1
visualization	1
web-based	1

nickolay's structure-function [17 articles] Export

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