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Recent papers matching nickolay's watchlist criteria

	Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000522. by Jouhyun Jeon, Jae-Seong Yang, Sanguk Kim posted to sequence_conservation correlated_mutations by barry to the group structural_bioinformatics on 2009-10-30 17:47:40 as along with 1 group Bioinformatics
	Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM. [My Copy] Current opinion in structural biology, Vol. 19, No. 5. (18 October 2009), pp. 623-631. by Christian M. Spahn, Pawel A. Penczek posted to review cryo_em bioinf_methods by barry to the group structural_bioinformatics on 2009-10-16 17:11:25 as along with 1 person and 1 group paulschlesinger McCammon
	Web Services: Principles and Technology [My Copy] (23 September 2007) by Michael Papazoglou posted to thesis by bicko on 2009-10-13 14:11:56 as along with 2 people and 1 group lauragon oliverbeckmann LInS
	A force field for virtual atom molecular mechanics of proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15667-15672. by Anil Korkut, Wayne A. Hendrickson posted to nma force_field coarse_grain by barry to the group structural_bioinformatics on 2009-09-28 19:29:39 as along with 1 person and 1 group jmccammon McCammon
	Analysing the origin of long-range interactions in proteins using lattice models [My Copy] BMC Structural Biology, Vol. 9, No. 1. (29 January 2009), 4. by Orly N. Brik, Ron Unger, Amnon Horovitz posted to allostery by barry to the group structural_bioinformatics on 2009-09-25 20:33:04 as along with 2 people and 1 group anuragsethi sobolevnrm McCammon
	Sampling Bottlenecks in De novo Protein Structure Prediction. [My Copy] Journal of molecular biology (28 July 2009) by David E. Kim, Ben Blum, Philip Bradley, David Baker posted to torsion_angles sampling conformational_search by barry to the group structural_bioinformatics on 2009-09-25 18:41:11 as along with 3 people and 1 group siggi84 apaydin reyez McCammon
	Graph Drawing Software (Mathematics and Visualization) [My Copy] (10 October 2003) by Michael Jünger posted to software by bicko on 2009-09-25 14:46:38 as along with 1 person robert85
	Fuzzy molecular surfaces. [My Copy] Journal of biomolecular structure & dynamics, Vol. 9, No. 4. (February 1992), pp. 759-768. by M. E. Agishtein posted to surface solvent accessible by csrocha to the group structural_bioinformatics on 2009-09-20 13:14:06 as
	Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect. [My Copy] Journal of molecular biology, Vol. 178, No. 1. (5 September 1984), pp. 63-89. by T. J. Richmond posted to surface solvent protein desolvation accesible by csrocha to the group structural_bioinformatics on 2009-09-20 12:59:36 as along with 1 person Lombardo_7
	Principles of Protein Structure (Springer Advanced Texts in Chemistry) [My Copy] (01 December 1996) by Georg E. Schulz, R. Heiner Schirmer posted to thesis ion-pairs by bicko on 2009-09-16 11:51:31 as
	Probing the Dark Matter of Protein Fold Space [My Copy] Vol. 17, No. 9. (9 September 2009), pp. 1244-1252. by William R. Taylor, Vijayalakshmi Chelliah, Siv M. Hollup, James T. MacDonald, Inge Jonassen posted to structure-analysis structure protein by kshameer to the group structural_bioinformatics on 2009-09-11 06:21:40 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	Models of S/pi interactions in protein structures: comparison of the H2S benzene complex with PDB data. [My Copy] Protein science : a publication of the Protein Society, Vol. 16, No. 10. (October 2007), pp. 2216-2223. by Ashley L. Ringer, Anastasia Senenko, C. David Sherrill posted to interface-properties by bicko on 2009-09-07 18:16:48 as
	Computational Geometry: Algorithms and Applications [My Copy] (11 July 1997) by Mark de Berg, Marc van Kreveld, Mark Overmars, Otfried Schwarzkopf posted to geometry by bicko on 2009-09-06 22:53:33 as
	E-MSD: an integrated data resource for bioinformatics. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005), D262. by S. Velankar, P. McNeil, V. Mittard-Runte, et al.A. Suarez, D. Barrell, R. Apweiler, K. Henrick posted to jbcb bioinformatics-database by bicko on 2009-09-02 18:50:50 as along with 1 person medic0747
	Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 9. (1 May 2007), pp. 1099-1105. by Richard E. Smith, Simon C. Lovell, David F. Burke, Rinaldo W. Montalvao, Tom L. Blundell posted to jbcb by bicko on 2009-09-02 18:43:40 as along with 3 people semin jwm carlk
	ISIS: interaction sites identified from sequence. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 2. (15 January 2007), pp. e13-16. by Yanay Ofran, Burkhard Rost posted to hot-spots by bicko on 2009-09-02 18:37:51 as along with 2 people dfdong qluo
	The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D291-D297. by Lesley H. Greene, Tony E. Lewis, Sarah Addou, et al.Alison Cuff, Tim Dallman, Mark Dibley, Oliver Redfern, Frances Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo posted to bioinformatics-database by bicko on 2009-09-02 18:13:47 as along with 2 people and 1 group sillitoe reyez Orengo Group Journal Picks
	Structural bioinformatics mutation analysis reveals genotype-phenotype correlations in von Hippel-Lindau disease and suggests molecular mechanisms of tumorigenesis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 1. (October 2009), pp. 84-96. by Julia R. Forman, Catherine L. Worth, G. Richard Bickerton, Tim G. Eisen, Tom L. Blundell posted to snps snp-impact-prediction blundell-group by bicko on 2009-09-02 18:07:06 as along with 2 people and 1 group AliC medic0747 Orengo Group Journal Picks
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 234. by Andrew J. Bordner, Andrey A. Gorin posted to quaternary-structure by bicko on 2009-09-02 17:48:36 as along with 6 people somak robfsouza chad_davis guhjy neils phoenixzxl
	Data growth and its impact on the SCOP database: new developments. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008), pp. D419-D425. by Antonina Andreeva, Dave Howorth, John-Marc M. Chandonia, et al.Steven E. Brenner, Tim J. Hubbard, Cyrus Chothia, Alexey G. Murzin posted to bioinformatics-database by bicko on 2009-09-02 15:24:18 as along with 5 people timhubbard yuslinaz druvus chad_davis reyez
	Initial sequencing and analysis of the human genome. [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 860-921. by E. S. Lander, L. M. Linton, B. Birren, et al.C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Waterston, R. K. Wilson, L. W. Hillier, J. D. McPherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J. B. Kramer, L. L. Cook, R. S. Fulton, D. L. Johnson, P. J. Minx, S. W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J. F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R. A. Gibbs, D. M. Muzny, S. E. Scherer, J. B. Bouck, E. J. Sodergren, K. C. Worley, C. M. Rives, J. H. Gorrell, M. L. Metzker, S. L. Naylor, R. S. Kucherlapati, D. L. Nelson, G. M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D. R. Smith, L. Doucette-Stamm, M. Rubenfield, K. Weinstock, H. M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R. W. Davis, N. A. Federspiel, A. P. Abola, M. J. Proctor, R. M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D. R. Cox, M. V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G. A. Evans, M. Athanasiou, R. Schultz, B. A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W. R. McCombie, M. de la Bastide, N. Dedhia, H. Blöcker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J. A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D. G. Brown, C. B. Burge, L. Cerutti, H. C. Chen, D. Church, M. Clamp, R. R. Copley, T. Doerks, S. R. Eddy, E. E. Eichler, T. S. Furey, J. Galagan, J. G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L. S. Johnson, T. A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W. J. Kent, P. Kitts, E. V. Koonin, I. Korf, D. Kulp, D. Lancet, T. M. Lowe, A. McLysaght, T. Mikkelsen, J. V. Moran, N. Mulder, V. J. Pollara, C. P. Ponting, G. Schuler, J. Schultz, G. Slater, A. F. Smit, E. Stupka, J. Szustakowski, D. Thierry-Mieg, J. Thierry-Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y. I. Wolf, K. H. Wolfe, S. P. Yang, R. F. Yeh, F. Collins, M. S. Guyer, J. Peterson, A. Felsenfeld, K. A. Wetterstrand, A. Patrinos, M. J. Morgan, P. de Jong, J. J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, Y. J. Chen, J. Szustakowki, International Human Genome Sequencing Consortium posted to classics 1st-yr-report by bicko on 2009-09-02 14:38:43 as along with 36 people and 3 groups timflutre jmanning2k kentz humburg vplagnol mqbphcw3 ThomasDOtto psique timhubbard jo_davies daforerog taroleo micromassive wimufi sgoetz fisherp reyez bozdagd cthachuk Cortel dragonrez jnemecek gg Dax42 aprasad yas balajis xdeupi dullhunk dgront djkt olympos nagendraproj incovoma yoanjacquemin brant Proteinkinases T_lab LabCompMed
	HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures [My Copy] Nucleic Acids Research, Vol. 36, No. Web Server. (19 May 2008), pp. W185-W189. by N. Fukuhara, T. Kawabata posted to modelling-interactions by bicko on 2009-09-02 12:21:06 as along with 2 people guhjy chad_davis
	Structural snapshots of conformational changes in a seven-helix membrane protein: lessons from bacteriorhodopsin [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (28 August 2009), pp. 433-439. by Teruhisa Hirai, Sriram Subramaniam, Janos K. Lanyi posted to review bacteriorhodopsin by barry to the group structural_bioinformatics on 2009-09-01 19:30:57 as along with 1 group McCammon
	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to review allosteric by barry to the group structural_bioinformatics on 2009-08-17 23:19:29 as along with 4 people and 1 group ubcg08l higueruelo pablocarb okapi McCammon
	Recent advances in computer-aided drug design [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 579-591. by Chun M. Song, Shen J. Lim, Joo C. Tong posted to drug-target drug-discovery drug-designing data-mining data-integration by kshameer to the group structural_bioinformatics on 2009-08-13 21:11:40 as along with 7 people mtruksa npt11tpn abhishek_tiwari reyez apaydin operon phoenixzxl
	Nucleotide-dependent conformational states of actin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 31. (4 August 2009), pp. 12723-12728. by Jim Pfaendtner, Davide Branduardi, Michele Parrinello, Thomas D. Pollard, Gregory A. Voth posted to actin md_simulation metadynamics by barry to the group structural_bioinformatics on 2009-08-07 00:31:56 as along with 3 people and 1 group pmung okapi anuragsethi McCammon
	Navigating the ribosome's metastable energy landscape. [My Copy] Trends in biochemical sciences (30 July 2009) by James B. Munro, Kevin Y. Sanbonmatsu, Christian M. Spahn, Scott C. Blanchard posted to protein_dynamics review ribosome by barry to the group structural_bioinformatics on 2009-08-06 23:38:31 as along with 2 people and 1 group anuragsethi reyez McCammon
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted to advice student by barry to the group structural_bioinformatics on 2009-07-31 18:51:47 as along with 52 people and 6 groups Yanno aaltenburger marekrud guhjy dolchan frohike operon CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom wei_tang fenghezi cisevol sdaehne druvus Pedro Martinez EvoDevo lab Barcelona Orengo Group Journal Picks Bioinformatics - CRUK ccsbs BergmanLab McCammon
	Think Twice: Understanding the High Potency of Bis(phenyl)methane Inhibitors of Thrombin [My Copy] Journal of Molecular Biology, Vol. 391, No. 3. (21 August 2009), pp. 552-564. by Bernhard Baum, Laveena Muley, Andreas Heine, Michael Smolinski, David Hangauer, Gerhard Klebe posted to drug_design by barry to the group structural_bioinformatics on 2009-07-30 18:41:22 as along with 1 group McCammon
	Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta [My Copy] Journal of Molecular Biology (08 July 2009) by Frank Dimaio, Michael D. Tyka, Matthew L. Baker, Wah Chiu, David Baker posted to cryo_em protein_protein by barry to the group structural_bioinformatics on 2009-07-26 09:05:37 as along with 2 people and 1 group apaydin reyez McCammon
	Improving Structure-Based Function Prediction Using Molecular Dynamics [My Copy] Vol. 17, No. 7. (15 July 2009), pp. 919-929. by Dariya S. Glazer, Randall J. Radmer, Russ B. Altman posted to function_prediction md_simulation by barry to the group structural_bioinformatics on 2009-07-22 19:04:59 as along with 1 person and 1 group apaydin McCammon
	Computational fragment-based binding site identification by ligand competitive saturation. [My Copy] PLoS computational biology, Vol. 5, No. 7. (10 July 2009), e1000435. by Olgun Guvench, Alexander D. MacKerell posted to drug_design by barry to the group structural_bioinformatics on 2009-07-10 18:13:53 as along with 5 people and 1 group oteri NickFurnham higueruelo TRHvidsten riffraff McCammon
	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000368. by Fran Lewitter, Michael Rebhan posted to career by barry to the group structural_bioinformatics on 2009-06-26 19:02:45 as along with 20 people and 4 groups GustavoLacerda fgibson daforerog zwang natstreet sobolevnrm orzenil kongl jago druvus kiekyon nuin operon aprasad chrisamiller dswan reyez djkt GeeSharpMinor ppgardne Convention on Knowledge Commons McCammon Bioinformatics Journal picks
	Fruitful and Futile Encounters along the Association Reaction between Proteins [My Copy] Biophysical Journal, Vol. 96, No. 10. (20 May 2009), pp. 4237-4248. by Michal Harel, Alexander Spaar, Gideon Schreiber posted to brownian_dynamics diffusion electrostatics protein_protein by barry to the group structural_bioinformatics on 2009-06-23 23:55:06 as along with 1 person and 1 group jmccammon McCammon
	Conformational changes in switch I of EF-G drive its directional cycling on and off the ribosome. [My Copy] The EMBO journal (18 June 2009) by Cristina Ticu, Roxana Nechifor, Boray Nguyen, Melanie Desrosiers, Kevin S. Wilson posted to ef-g ntpases swi-swii by barry to the group structural_bioinformatics on 2009-06-23 22:21:08 as along with 1 group McCammon
	K-Boost: A Scalable Algorithm for High-Quality Clustering of Microarray Gene Expression Data [My Copy] Journal of Computational Biology, Vol. 16, No. 6. (June 2009), pp. 859-873. by Filippo Geraci, Mauro Leoncini, Manuela Montangero, Marco Pellegrini, Elena M. Renda posted to clustering by barry to the group structural_bioinformatics on 2009-06-23 22:17:30 as along with 1 group Bioinformatics
	Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (14 July 2009), pp. 684-690. by Jianmin Gao, Daryl A. Bosco, Evan T. Powers, Jeffery W. Kelly posted to hbond protein_structure by barry to the group structural_bioinformatics on 2009-06-23 22:14:38 as along with 1 person and 1 group sobolevnrm McCammon
	FireDock: a web server for fast interaction refinement in molecular docking [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W229-232. by Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson posted to docking_refinement protein_protein by barry to the group structural_bioinformatics on 2009-06-18 20:29:10 as
	FlexServ: an integrated tool for the analysis of protein flexibility [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1709-1710. by Jordi Camps, Oliver Carrillo, Agusti Emperador, et al.Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep L. Gelpi, Modesto Orozco posted to protein-structure structure-analysis web-server by kshameer to the group structural_bioinformatics on 2009-06-17 17:57:34 as along with 2 people flbarroso sobolevnrm
	Cloud computing [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), 1475. by Alex Bateman, Matt Wood posted to cloud_computing general by barry to the group structural_bioinformatics on 2009-06-16 02:40:37 as along with 22 people and 3 groups rdiaz fgibson walshtp Jingbo aan pekrau tnhh niallhaslam bertelsen apaydin kiekyon reyez sobolevnrm cymacs druvus acesforum thegoose mikel_egana dullhunk dswan jmeppley bmajoros McCammon baker-group Bioinformatics
	Replica exchange simulations of transient encounter complexes in protein–protein association [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2 September 2008), pp. 12855-12860. by Young C. Kim, Chun Tang, G. Marius Clore, Gerhard Hummer posted to protein_protein by barry to the group structural_bioinformatics on 2009-06-11 20:08:20 as along with 2 people and 1 group okapi cactus McCammon
	Relating protein conformational changes to packing efficiency and disorder. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 6. (June 2009), pp. 1230-1240. by N. Bhardwaj, M. Gerstein posted to protein_dynamics by barry to the group structural_bioinformatics on 2009-06-08 04:44:37 as along with 3 people and 1 group skywalkerus02 klexa sobolevnrm McCammon
	Advances and pitfalls of protein structural alignment. [My Copy] Current opinion in structural biology, Vol. 19, No. 3. (27 June 2009), pp. 341-348. by Hitomi Hasegawa, Liisa Holm posted to review structural_bioinformatics structure_comparison by barry to the group structural_bioinformatics on 2009-06-08 04:25:56 as along with 4 people and 2 groups sebk davidalee dgront sobolevnrm OPIG Orengo Group Journal Picks
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to machine-learning structure-analysis by kshameer to the group structural_bioinformatics on 2009-05-29 08:01:34 as along with 5 people dfdong ubcg08l marti apaydin phoenixzxl
	The SALAMI protein structure search server [My Copy] Nucl. Acids Res. (22 May 2009), gkp431. by Thomas Margraf, Gundolf Schenk, Andrew E. Torda posted to protein structure structure-analysis by kshameer to the group structural_bioinformatics on 2009-05-27 06:15:51 as along with 1 person neils
	Biophysical dissection of membrane proteins [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 344-346. by Stephen H. White posted to membrane_proteins review by barry to the group structural_bioinformatics on 2009-05-21 22:56:03 as along with 9 people and 2 groups amoszlj rph girayenkavi ColumbusLabs viktor21614 kevinchannon hsekiguc sobolevnrm paulschlesinger McCammon baker-group
	Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites [My Copy] Biology Direct, Vol. 4 (20 May 2009), 18. by Sebastian, Frank Eisenhaber posted to docking drug-designing drug-target by kshameer to the group structural_bioinformatics on 2009-05-21 15:07:12 as along with 2 people friendpine zwang
	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted to allosteric by barry to the group structural_bioinformatics on 2009-05-21 04:06:23 as along with 2 people and 2 groups biblioteca_babel sobolevnrm McCammon baker-group
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted to pka review by barry to the group structural_bioinformatics on 2009-05-21 04:04:03 as along with 6 people and 2 groups pjkiley scampos klexa nanonan sobolevnrm paulschlesinger McCammon baker-group
	Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures [My Copy] FEBS Journal, Vol. 275, No. 1. (January 2008), pp. 1-21. by Wlodawer, Alexander, Minor, et al. Wladek, Dauter, Zbigniew, Jaskolski, Mariusz posted to protein_structure review by barry to the group structural_bioinformatics on 2009-05-21 04:02:34 as along with 6 people and 2 groups klexa nanonan sobolevnrm ae1054 aisyahrehan rph McCammon baker-group

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p2	56
binding	47
protein	42
algorithm	34
protein-ligand	32
to-be-tagged	31
structure	29
site	28
prediction	25
bibtex-import	22
structure-function	17
database	16
docking	16
surface	16
bsc	14
review	14
application	13
ligand	13
nov09	13
protein-protein	13
p1	12
identification	11
alignment	10
binding-site-analysis	9
comparison	9
method	9
pattern	9
pdb	9
residue-conservation	9
aa-propensity	8
flexibility	8
moad	8
similarity	8
bs-similarity	7
wrmsd	7
hot-spots	6
geometric-hashing	5
msa	5
props	5
scoring-functions	5
sep09	5
structure-searching	5
thermodynamics	5
amino-acids	4
cheminformatics	4
domain-classification	4
drug	4
function	4
geometric	4
geometry-based	4
interaction	4
network	4
protein-interface	4
side-chains	4
software	4
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affinity	3
cadd	3
enzyme	3
evolution	3
force-field	3
graph-theory	3
lead_discovery	3
molecular_dynamics	3
oct09	3
printed	3
sequence	3
small	3
superposition	3
aug09	2
chemistry	2
clique	2
concavity	2
dd	2
dds	2
information-theory	2
insulin	2
insulin-sensitivity	2
knowledge-based-potentials	2
lead_optimization	2
machine-learning	2
moe	2
molecule	2
physicochemical	2
similarity-network	2
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structural	2
structural-conservation	2
structure-activity	2
virtual-screening	2
action	1
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amber	1
aromatics	1
basal-glucose	1
beta-cells	1
binding_site	1
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biological_relevance	1
calatytic	1
catalysis	1
charmm	1
classification	1
classifier	1
clustering	1
cmoparison	1
compound_libraries	1
computational	1
conservation	1
data	1
data-integration	1
de-novo	1
distance	1
drug_discovery_and_development	1
electrostatics	1
energy_minimization	1
fingerprint	1
folding	1
gi	1
gometry-based	1
gpcr	1
graph	1
hinge	1
hot_spots	1
hyfrophobic-effect	1
indentification	1
industry	1
itc	1
kinase	1
lab	1
ligand-volume	1
localization	1
mapping	1
mc	1
metabolism	1
metabolome	1
metric	1
mining	1
model	1
multiple	1
multiple_structural_alignment	1
neural	1
ontology	1
opinion	1
package	1
pathway	1
pca	1
pharmacophore	1
property	1
python	1
qsar	1
r	1
residue	1
scoring	1
screening	1
server	1
simulation	1
tanimoto	1
target	1
topology	1
visualization	1
web-based	1

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