nigham's library 204 articles Export

	Critical assessment of methods of protein structure prediction-Round VII. [My Copy] Proteins, Vol. 69 Suppl 8, No. S8. (5 October 2007), pp. 3-9. by J. Moult, K. Fidelis, A. Kryshtafovych, B. Rost, T. Hubbard, A. Tramontano posted to no-tag by nigham on 2008-09-07 18:37:09 as along with 5 people timhubbard mijam mcbla j3xucite saunders
	Protein Kinase Inhibitors: Insights into Drug Design from Structure [My Copy] Science, Vol. 303, No. 5665. (19 March 2004), pp. 1800-1805. by Martin E. M. Noble, Jane A. Endicott, Louise N. Johnson posted to thesis by nigham on 2008-07-22 11:45:18 as along with 7 people saradtc guhjy Yanno tjimenez aqeel kummerj superpyrin
	Effect of cavity-creating mutations in the hydrophobic core of chymotrypsin inhibitor 2. [My Copy] Biochemistry, Vol. 32, No. 42. (26 October 1993), pp. 11259-11269. by S. E. Jackson, M. Moracci, N. elMasry, C. M. Johnson, A. R. Fersht posted to 1coa pdb thesis by nigham on 2008-07-17 07:09:55 as
	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops [My Copy] Algorithms in Bioinformatics (2007), pp. 265-276. by Ankur Dhanik, Peggy Yao, Nathan Marz, et al.Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe posted to flexibility protein thesis by nigham on 2008-07-16 08:00:55 as
	New Monte Carlo algorithms for protein folding. [My Copy] Current opinion in structural biology, Vol. 9, No. 2. (April 1999), pp. 177-183. by U. H. Hansmann, Y. Okamoto posted to folding protein thesis by nigham on 2008-07-15 06:12:56 as along with 6 people apaydin flbarroso dgront rabio insectopalo iantunbridge
	Structural details, pathways, and energetics of unfolding apomyoglobin. [My Copy] Journal of molecular biology, Vol. 325, No. 3. (17 January 2003), pp. 555-567. by A. Onufriev, D. A. Case, D. Bashford posted to dynamics molecular thesis trajectory by nigham on 2008-07-13 09:32:18 as
	The effects of solvent on the conformation and the collective motions of protein: Normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum [My Copy] Chemical Physics, Vol. 158, No. 2-3. (15 December 1991), pp. 447-472. by Akio Kitao, Fumio Hirata, Nobuhiro Go posted to analysis dynamics molecular thesis by nigham on 2008-07-12 08:45:33 as along with 1 person saravan
	Essential dynamics of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 17, No. 4. (December 1993), pp. 412-425. by Andrea Amadei, Antonius B. M. Linssen, Herman J. C. Berendsen posted to no-tag by nigham on 2008-07-12 08:42:29 as along with 10 people and 1 group kazemi Diego_Prada baaden aqeel yongzhao ttjoseph ffranca allmensch carlescorbi dimka TSRI_MGL
	Convergence of molecular dynamics simulations of membrane proteins. [My Copy] Proteins (22 January 2007) by Alan Grossfield, Scott E E. Feller, Michael C C. Pitman posted to dynamics molecular thesis by nigham on 2008-07-11 10:47:45 as along with 2 people sunnytov dimka
	The conserved residues of the ligand-binding domains of steroid receptors are located in the core of the molecules. [My Copy] Journal of molecular graphics & modelling, Vol. 19, No. 6. (2001) by M. Maeda posted to change conformational by nigham on 2008-07-10 10:57:06 as
	Crystal structure of a gamma-herpesvirus cyclin-cdk complex. [My Copy] The EMBO journal, Vol. 19, No. 12. (15 June 2000), pp. 2877-2888. by G. L. Card, P. Knowles, H. Laman, N. Jones, N. Q. McDonald posted to change conformational by nigham on 2008-07-10 10:53:42 as
	Crystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-A resolution: a large conformational change in ADP-dependent glucokinase. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 10. (October 2002), pp. 2456-2463. by H. Tsuge, H. Sakuraba, T. Kobe, A. Kujime, N. Katunuma, T. Ohshima posted to change conformational by nigham on 2008-07-10 10:51:27 as
	pFlexAna: detecting conformational changes in remotely related proteins [My Copy] Nucl. Acids Res. (13 May 2008), gkn259. by Anshul Nigham, Lisa Tucker-Kellogg, Ivana Mihalek, Chandra Verma, David Hsu posted to pflexana by nigham on 2008-07-03 06:03:02 as
	The CATH database: an extended protein family resource for structural and functional genomics. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 452-455. by F. M. Pearl, C. F. Bennett, J. E. Bray, et al.A. P. Harrison, N. Martin, A. Shepherd, I. Sillitoe, J. Thornton, C. A. Orengo posted to cath families pdb structural by nigham on 2008-07-02 13:34:59 as along with 3 people and 1 group sillitoe flbarroso yuslinaz Orengo Group Journal Picks
	Crystal structure of thiaminase-I from Bacillus thiaminolyticus at 2.0 A resolution. [My Copy] Biochemistry, Vol. 37, No. 45. (10 November 1998), pp. 15981-15989. by N. Campobasso, C. A. Costello, C. Kinsland, T. P. Begley, S. E. Ealick posted to 2thi pdb thesis by nigham on 2008-07-02 12:59:11 as
	Protein intermediate trapped by the simultaneous crystallization process. Crystal structure of an iron-saturated intermediate in the Fe3+ binding pathway of camel lactoferrin at 2.7 a resolution. [My Copy] The Journal of biological chemistry, Vol. 276, No. 39. (28 September 2001), pp. 36817-36823. by J. A. Khan, P. Kumar, A. Srinivasan, T. P. Singh posted to 1i6q pdb thesis by nigham on 2008-07-02 12:57:16 as
	Structure of human apolactoferrin at 2.0 A resolution. Refinement and analysis of ligand-induced conformational change. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 54, No. Pt 6 Pt 2. (1 November 1998), pp. 1319-1335. by G. B. Jameson, B. F. Anderson, G. E. Norris, D. H. Thomas, E. N. Baker posted to 1cb6 pdb thesis by nigham on 2008-07-02 12:54:57 as
	Molecular replacement solution of the structure of apolactoferrin, a protein displaying large-scale conformational change. [My Copy] Acta crystallographica. Section B, Structural science, Vol. 47 ( Pt 6) (1 December 1991), pp. 998-1004. by G. E. Norris, B. F. Anderson, E. N. Baker posted to pdb thesis by nigham on 2008-07-02 11:25:32 as along with 1 person jrperillaj
	Conformational change of proteins arising from normal mode calculations [My Copy] Protein Eng., Vol. 14, No. 1. (1 January 2001), pp. 1-6. by F. Tama, Y. H. Sanejouand posted to nma thesis by nigham on 2008-07-01 11:58:52 as along with 7 people and 1 group sanejouand sobolevnrm baaden aqeel ruvido martainn saravan baker-group
	Global fold determination from a small number of distance restraints. [My Copy] J Mol Biol, Vol. 251, No. 2. (11 August 1995), pp. 308-326. by A. Aszódi, M. J. Gradwell, W. R. Taylor posted to thesis by nigham on 2008-06-30 05:29:09 as along with 1 person gbart
	A simplified representation of protein conformations for rapid simulation of protein folding. [My Copy] J Mol Biol, Vol. 104, No. 1. (14 June 1976), pp. 59-107. by M. Levitt posted to representation thesis by nigham on 2008-06-30 05:26:33 as along with 3 people stefanorb baaden dgront
	A new force field for molecular mechanical simulation of nucleic acids and proteins [My Copy] Journal of the American Chemical Society, Vol. 106, No. 3. (1984), pp. 765-784. by S. J. Weiner, P. A. Kollman, D. A. Case, et al.U. C. Singh, C. Ghio, G. Alagona, S. Profeta, P. Weiner posted to itay thesis by nigham on 2008-06-30 05:22:31 as
	The atomic resolution crystal structure of atratoxin determined by single wavelength anomalous diffraction phasing. [My Copy] The Journal of biological chemistry, Vol. 279, No. 37. (10 September 2004), pp. 39094-39104. by X. Lou, Q. Liu, X. Tu, et al.J. Wang, M. Teng, L. Niu, D. J. Schuller, Q. Huang, Q. Hao posted to 1v6p pdb thesis by nigham on 2008-06-30 05:16:08 as
	Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae. [My Copy] Science (New York, N.Y.), Vol. 272, No. 5269. (21 June 1996), pp. 1788-1791. by E. Hofmann, P. M. Wrench, F. P. Sharples, R. G. Hiller, W. Welte, K. Diederichs posted to 1ppr pdb thesis by nigham on 2008-06-30 05:13:23 as
	Optimization of P1-P3 groups in symmetric and asymmetric HIV-1 protease inhibitors. [My Copy] European journal of biochemistry / FEBS, Vol. 270, No. 8. (April 2003), pp. 1746-1758. by H. O. Andersson, K. Fridborg, S. Löwgren, et al.M. Alterman, A. Mühlman, M. Björsne, N. Garg, I. Kvarnström, W. Schaal, B. Classon, A. Karlén, U. H. Danielsson, G. Ahlsén, U. Nillroth, L. Vrang, B. Oberg, B. Samuelsson, A. Hallberg, T. Unge posted to 1ebz pdb thesis by nigham on 2008-06-29 09:57:47 as
	Induced fit in RNA-protein recognition [My Copy] Nat Struct Mol Biol, Vol. 7, No. 10. (October 2000), pp. 834-837. by James R. Williamson posted to rna thesis by nigham on 2008-06-29 07:46:26 as along with 1 person marck
	Conformational coupling in DNA polymerase fidelity. [My Copy] Annual review of biochemistry, Vol. 62 (1993), pp. 685-713. by K. A. Johnson posted to dna thesis by nigham on 2008-06-29 07:44:18 as
	Conformational changes associated with protein-protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 1. (February 2004), pp. 104-109. by Chern-Sing Goh, Duncan Milburn, Mark Gerstein posted to change conformational thesis by nigham on 2008-06-29 07:40:29 as along with 5 people flbarroso LamBras boris_aguilar apaydin bicko
	Molecular recognition in antibody-antigen complexes. [My Copy] Advances in protein chemistry, Vol. 61 (2002), pp. 119-160. by E. J. Sundberg, R. A. Mariuzza posted to change conformational thesis by nigham on 2008-06-29 07:38:24 as
	Multiple conformational changes in enzyme catalysis. [My Copy] Biochemistry, Vol. 41, No. 26. (2 July 2002), pp. 8221-8228. by G. G. Hammes posted to catalysis enzyme thesis by nigham on 2008-06-29 07:35:48 as along with 2 people lna siebertm
	Equation of State Calculations by Fast Computing Machines [My Copy] J. Chem. Phys., Vol. 21 (June 1953), pp. 1087-1092. by N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, E. Teller posted to carlo monte by nigham on 2008-06-27 09:44:35 as along with 1 person carmenrg
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted to docking thesis by nigham on 2008-06-27 06:22:59 as along with 25 people and 4 groups rabio ucbcjbm flbarroso csrocha oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Evangelia Structural Biology Group TorVergata Bioinformatics TSRI_MGL insilicodrug
	Protein structure similarities. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 348-353. by P. Koehl posted to review similarity structural by nigham on 2008-06-27 06:17:49 as along with 1 person bicko
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to families structural by nigham on 2008-06-27 06:11:16 as along with 19 people and 6 groups dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution [My Copy] Science, Vol. 246, No. 4934. (1 December 1989), pp. 1149-1152. by M. Miller, J. Schneider, Bk Sathyanarayana, et al.Mv Toth, Gr Marshall, L. Clawson, L. Selk, Sb Kent, A. Wlodawer posted to no-tag by nigham on 2008-06-24 12:08:35 as along with 1 person zambujo
	Active human immunodeficiency virus protease is required for viral infectivity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 13. (July 1988), pp. 4686-4690. by N. E. Kohl, E. A. Emini, W. A. Schleif, et al.L. J. Davis, J. C. Heimbach, R. A. Dixon, E. M. Scolnick, I. S. Sigal posted to no-tag by nigham on 2008-06-24 12:06:07 as
	Einfluss der Configuration auf die Wirkung der Enzyme [My Copy] Berichte der deutschen chemischen Gesellschaft, Vol. 27, No. 3. (1894), pp. 2985-2993. by Emil Fischer posted to key lock thesis by nigham on 2008-06-24 06:17:00 as along with 1 person aqeel
	Application of a Theory of Enzyme Specificity to Protein Synthesis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 44, No. 2. (February 1958), pp. 98-104. by D. E. Koshland posted to induced-fit thesis by nigham on 2008-06-24 06:14:33 as along with 7 people aqeel cen4ik apostola robert kazemi sim82 boris_aguilar
	A millennial myosin census. [My Copy] Molecular biology of the cell, Vol. 12, No. 4. (April 2001), pp. 780-794. by J. S. Berg, B. C. Powell, R. E. Cheney posted to thesis by nigham on 2008-06-23 15:10:46 as
	Crystal structure of firefly luciferase throws light on a superfamily of adenylate-forming enzymes. [My Copy] Structure (London, England : 1993), Vol. 4, No. 3. (15 March 1996), pp. 287-298. by E. Conti, N. P. Franks, P. Brick posted to thesis by nigham on 2008-06-23 14:54:46 as
	100,000 protein structures for the biologist. [My Copy] Nature structural biology, Vol. 5, No. 12. (December 1998), pp. 1029-1032. by A. Sali posted to no-tag by nigham on 2008-06-23 10:47:49 as
	Visualizing spatially correlated dynamics that directs RNA conformational transitions [My Copy] Nature, Vol. 450, No. 7173., pp. 1263-1267. by Qi Zhang, Andrew C. Stelzer, Charles K. Fisher, Hashim M. Al-Hashimi posted to no-tag by nigham on 2008-06-23 09:55:22 as along with 7 people and 3 groups cactus sobolevnrm niallhaslam joseph_x_zhou kintoki kluck simone baker-group HIV_DR Soft Matter
	Structural biology: The dance of domains [My Copy] Nature, Vol. 450, No. 7173. (19 December 2007), pp. 1171-1172. by Joseph D. Puglisi posted to change conformational thesis by nigham on 2008-06-23 09:48:33 as along with 1 person mingzhi
	Conformational proofreading: the impact of conformational changes on the specificity of molecular recognition. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by Y. Savir, T. Tlusty posted to change conformational thesis by nigham on 2008-06-23 09:29:31 as along with 3 people dkoveal jjray Ema
	The ups and downs of protein topology; rapid comparison of protein structure. [My Copy] Protein engineering, Vol. 13, No. 12. (December 2000), pp. 829-837. by A. C. Martin posted to no-tag by nigham on 2008-06-16 15:34:43 as
	Protein structural similarity search by Ramachandran codes [My Copy] BMC Bioinformatics, Vol. 8 (23 August 2007), 307. by Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping-Chiang Lyu posted to sarst by nigham on 2008-06-16 12:32:59 as along with 1 person reyez
	Macromolecular electrostatics: continuum models and their growing pains. [My Copy] Current opinion in structural biology, Vol. 11, No. 2. (April 2001), pp. 243-252. by T. Simonson posted to md simulation by nigham on 2008-04-30 04:23:00 as along with 1 person flbarroso
	Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 410-417. by K. Ginalski, L. Rychlewski posted to folding by nigham on 2008-04-29 10:35:15 as along with 1 person dgront
	Protein structure comparison using the markov transition model of evolution. [My Copy] Proteins, Vol. 41, No. 1. (1 October 2000), pp. 108-122. by T. Kawabata, K. Nishikawa posted to no-tag by nigham on 2008-04-17 19:14:17 as along with 1 person analogAI
	Principles that Determine the Structure of Proteins [My Copy] Annual Review of Biochemistry, Vol. 53, No. 1. (1984), pp. 537-572. by C. Chothia posted to no-tag by nigham on 2008-04-16 11:21:09 as along with 3 people and 2 groups carlosjavierna ana barry structural_bioinformatics Bioinformatics

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protein	84
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