ninch's library 20 articles Export

	Coparalogy: physical and functional clusterings in the human genome. [My Copy] Biochemical and biophysical research communications, Vol. 288, No. 2. (26 October 2001), pp. 362-370. by C. Popovici, M. Leveugle, D. Birnbaum, F. Coulier posted to paradb paralogy by ninch on 2008-05-13 10:10:49 as
	ParaDB: a tool for paralogy mapping in vertebrate genomes. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 63-67. by M. Leveugle, K. Prat, N. Perrier, D. Birnbaum, F. Coulier posted to database paradb paralogy by ninch on 2008-05-12 14:10:51 as
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to bioperl perl by ninch on 2008-05-12 13:48:50 as along with 27 people and 2 groups akou ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi EisenLab FAB-lab
	EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. [My Copy] Nucleic Acids Res (5 November 2007) by Guohui Ding, Yan Sun, Hong Li, et al.Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li posted to paralogy by ninch on 2008-05-12 13:07:22 as along with 3 people druvus guhjy cjeans
	OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by F. Chen, A. J. Mackey, C. J. Stoeckert, D. S. Roos posted to database orthology orthomcl by ninch on 2008-05-12 13:02:16 as along with 5 people nlapalu dullhunk druvus operon maximilianh
	InParanoid 6: eukaryotic ortholog clusters with inparalogs. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by A. C. Berglund, E. Sjölund, G. Ostlund, E. L. Sonnhammer posted to clustering database inparanoid orthology paralogy by ninch on 2008-05-12 12:51:40 as along with 3 people operon cabbagezs guhjy
	NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by K. D. Pruitt, T. Tatusova, D. R. Maglott posted to database refseq by ninch on 2008-05-05 13:47:47 as along with 4 people and 1 group kuhn jjray indigoviolet incovoma EisenLab
	A genomic perspective on protein families. [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 631-637. by R. L. Tatusov, E. V. Koonin, D. J. Lipman posted to clustering cog orthology rbh by ninch on 2007-10-20 01:18:55 as along with 7 people coela bjorns balajis nuke2005 AaronDarling ruvido Ema
	Roundup: a multi-genome repository of orthologs and evolutionary distances [My Copy] Bioinformatics In Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2044-2046. by Todd F. DeLuca, I-Hsien Wu, Jian Pu, et al.Thomas Monaghan, Leonid Peshkin, Saurav Singh, Dennis P. Wall posted to clustering orthology rsd by ninch on 2007-10-20 01:13:56 as along with 5 people and 1 group agbiotec dfdong operon indigoviolet cjeans EisenLab
	CLUSS: Clustering of protein sequences based on a new similarity measure [My Copy] BMC Bioinformatics, Vol. 8 (04 August 2007), 286. by Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski, Alain Fleury posted to clustering phylogeny by ninch on 2007-10-15 08:02:40 as along with 4 people druvus grahamc nklee bobychan
	OrthoMCL: identification of ortholog groups for eukaryotic genomes. [My Copy] Genome research, Vol. 13, No. 9. (September 2003), pp. 2178-2189. by Li Li, Christian J. Stoeckert, David S. Roos posted to clustering orthology orthomcl by ninch on 2007-10-14 12:25:45 as along with 15 people and 2 groups GustavoLacerda biomcgary sjcockell thegoose2 nlapalu dullhunk natstreet druvus tharris mdimmic operon indigoviolet AaronDarling bluto maximilianh C. elegans / WormBase EisenLab
	Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes. [My Copy] Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 647-658. by I. Uchiyama posted to clustering orthology by ninch on 2007-10-13 01:39:53 as
	COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations. [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 779-788. by R. Jothi, E. Zotenko, A. Tasneem, T. M. Przytycka posted to bootstrapping clustering correlation orthology single-linkage by ninch on 2007-10-13 01:37:04 as along with 1 person tny
	The role of lineage-specific gene family expansion in the evolution of eukaryotes. [My Copy] Genome research, Vol. 12, No. 7. (July 2002), pp. 1048-1059. by Olivier Lespinet, Yuri I. Wolf, Eugene V. Koonin, L. Aravind posted to clustering orthology single-linkage by ninch on 2007-10-13 01:19:59 as along with 3 people and 1 group kaarsinogen thegoose2 tharris C. elegans / WormBase
	Ortholog Clustering on a Multipartite Graph [My Copy] IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 4, No. 1. (January 2007), pp. 17-27. by Akshay Vashist, Casimir A. Kulikowski, Ilya Muchnik posted to clustering orthology by ninch on 2007-10-13 01:03:37 as along with 4 people wiedenhoeft cgaugain bigbossman SimonStrel
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted to orthology rsd by ninch on 2007-10-13 00:55:52 as along with 7 people and 3 groups cgaugain operon ana indigoviolet dquest rvosa cerca structural_bioinformatics Bioinformatics EisenLab
	Bayesian gene/species tree reconciliation and orthology analysis using MCMC [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i7-i15. by L. Arvestad, A. C. Berglund, J. Lagergren, B. Sennblad posted to bayesian orthology reconciliation by ninch on 2007-10-13 00:50:32 as along with 2 people arve bioinfo
	Automatic clustering of orthologs and inparalogs shared by multiple proteomes. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006) by A. Alexeyenko, I. Tamas, G. Liu, E. L. Sonnhammer posted to clustering inparanoid orthology single-linkage by ninch on 2007-10-13 00:41:48 as along with 4 people and 2 groups cgaugain operon indigoviolet jhc EisenLab BioinfoCIPF
	Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. [My Copy] Journal of molecular biology, Vol. 314, No. 5. (14 December 2001), pp. 1041-1052. by M. Remm, C. E. Storm, E. L. Sonnhammer posted to bootstrapping clustering inparanoid orthology paralogy rbh by ninch on 2007-10-13 00:38:32 as along with 15 people and 3 groups biomcgary isimpson thegoose2 operon cgaugain tharris tmmurali indigoviolet Sharpshoot jhc gurkanbebek bluto incovoma cerca wiedehopf C. elegans / WormBase EisenLab BioinfoCIPF
	Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. [My Copy] Bioinformatics, Vol. 18, No. 1. (January 2002), pp. 92-99. by C. E. Storm, E. L. Sonnhammer posted to bootstrapping clustering orthology phylogeny by ninch on 2007-10-13 00:32:00 as along with 6 people and 1 group cgaugain mdimmic operon rvosa dlr indigoviolet EisenLab

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orthology	14
clustering	12
paralogy	5
database	4
bootstrapping	3
inparanoid	3
single-linkage	3
phylogeny	2
paradb	2
rsd	2
rbh	2
orthomcl	2
perl	1
refseq	1
bayesian	1
bioperl	1
reconciliation	1
correlation	1
cog	1

ninch's library 20 articles Export

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